Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 2.7e-77 292.0 149 100.0
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 6.8e-73 277.3 149 94.6
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 6.8e-73 277.3 149 94.6
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 8.3e-71 270.4 151 92.7
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 1.6e-69 266.2 150 92.0
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 5.9e-69 264.2 150 91.3
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 6.1e-66 254.2 149 88.6
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 8.9e-65 250.4 149 85.2
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.3e-63 246.5 149 84.6
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.2e-63 245.7 148 86.5
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.4e-62 243.0 149 84.6
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 5.4e-62 241.1 149 83.2
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 4.9e-55 218.0 142 76.8
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 4.1e-46 188.3 143 62.9
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 4.1e-46 188.3 140 65.0
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 5.4e-46 188.0 143 62.9
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 5.4e-46 188.0 143 62.2
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 7.0e-46 187.6 143 62.9
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 7.0e-46 187.6 143 60.8
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 9.2e-46 187.2 142 63.4
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.0e-45 186.0 143 61.5
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 4.6e-45 184.9 140 61.4
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 4.6e-45 184.9 140 61.4
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 4.6e-45 184.9 140 61.4
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 4.6e-45 184.9 142 63.4
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 6.0e-45 184.5 143 60.8
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 7.8e-45 184.1 143 60.8
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 2.3e-44 182.6 143 58.7
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 2.3e-44 182.6 143 61.5
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 3.0e-44 182.2 140 60.0
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 3.9e-44 181.8 143 60.8
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 3.9e-44 181.8 143 61.5
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 5.0e-44 181.4 143 59.4
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 5.0e-44 181.4 143 61.5
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 6.6e-44 181.0 143 60.8
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 6.6e-44 181.0 143 60.8
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.5e-43 179.9 143 60.1
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 1.9e-43 179.5 135 63.0
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 2.5e-43 179.1 143 58.7
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.5e-43 179.1 143 60.8
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 3.3e-43 178.7 143 60.1
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.3e-43 178.7 142 59.2
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 4.3e-43 178.3 143 60.8
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 5.6e-43 177.9 143 60.8
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 5.6e-43 177.9 143 58.7
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 7.3e-43 177.6 143 59.4
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 7.3e-43 177.6 143 58.7
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 9.5e-43 177.2 143 58.7
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 9.5e-43 177.2 140 59.3
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.2e-42 176.8 143 58.7
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 1.6e-42 176.4 105 81.9
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 3.6e-42 175.3 143 58.0
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 8.1e-42 174.1 140 57.1
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 1.1e-41 173.7 143 58.0
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 1.4e-41 173.3 155 56.8
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 1.8e-41 172.9 143 57.3
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 2.3e-41 172.6 140 56.4
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 2.3e-41 172.6 142 58.5
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 2.3e-41 172.6 143 56.6
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 4.0e-41 171.8 143 56.6
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 4.0e-41 171.8 140 57.1
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 5.2e-41 171.4 140 57.9
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 6.8e-41 171.0 140 55.7
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 8.9e-41 170.6 140 55.7
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.2e-40 170.2 143 55.9
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.2e-40 170.2 143 54.5
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 1.2e-40 170.2 143 54.5
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 1.5e-40 169.9 143 56.6
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 1.5e-40 169.9 140 57.9
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 2.0e-40 169.5 140 55.0
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.0e-40 169.5 140 55.0
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.0e-40 169.5 140 55.0
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 2.0e-40 169.5 140 55.7
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 3.4e-40 168.7 140 57.1
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.4e-40 168.7 143 53.8
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 3.4e-40 168.7 148 54.7
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 4.4e-40 168.3 150 55.3
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 4.4e-40 168.3 140 55.0
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 4.4e-40 168.3 140 55.0
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 9.9e-40 167.2 140 55.7
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 9.9e-40 167.2 142 57.0
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 2.2e-39 166.0 140 56.4
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 2.2e-39 166.0 143 55.9
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 2.9e-39 165.6 153 53.6
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 3.7e-39 165.2 142 52.8
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 3.7e-39 165.2 140 55.0
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 3.7e-39 165.2 140 57.1
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 3.7e-39 165.2 138 56.5
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 4.9e-39 164.9 140 55.0
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 6.4e-39 164.5 143 56.6
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 6.4e-39 164.5 143 55.2
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 6.4e-39 164.5 143 55.2
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 6.4e-39 164.5 142 54.9
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 8.3e-39 164.1 143 55.2
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 8.3e-39 164.1 142 54.2
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 1.1e-38 163.7 142 52.8
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.4e-38 163.3 143 55.9
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 2.4e-38 162.5 143 55.9
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 2.4e-38 162.5 154 53.2
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 2.4e-38 162.5 143 54.5
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 7.1e-38 161.0 143 54.5
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 7.1e-38 161.0 139 53.2
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 7.1e-38 161.0 140 53.6
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 1.2e-37 160.2 140 55.7
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 1.2e-37 160.2 139 52.5
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 1.6e-37 159.8 142 52.1
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 2.1e-37 159.5 142 51.4
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 3.5e-37 158.7 142 50.0
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 3.5e-37 158.7 142 52.8
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 4.6e-37 158.3 142 52.1
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 6.0e-37 157.9 142 50.0
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 7.8e-37 157.5 140 55.0
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 7.8e-37 157.5 149 51.7
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 1.0e-36 157.1 143 54.5
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 1.3e-36 156.8 174 46.6
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 1.3e-36 156.8 140 52.1
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 1.3e-36 156.8 140 54.3
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 1.7e-36 156.4 143 53.1
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 2.3e-36 156.0 143 51.7
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 3.0e-36 155.6 140 51.4
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 5.1e-36 154.8 141 51.8
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 5.1e-36 154.8 140 52.9
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 5.1e-36 154.8 135 54.1
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 6.6e-36 154.5 144 50.0
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 6.6e-36 154.5 140 50.7
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 1.9e-35 152.9 140 50.0
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 4.3e-35 151.8 139 52.5
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 9.5e-35 150.6 154 48.7
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 1.1e-33 147.1 141 50.4
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.8e-33 146.4 143 50.3
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 2.4e-33 146.0 141 51.1
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 8.9e-33 144.1 163 46.6
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 8.9e-33 144.1 140 52.1
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 1.5e-32 143.3 215 39.5
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 3.4e-32 142.1 107 61.7
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 4.4e-32 141.7 186 44.6
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 4.9e-31 138.3 140 48.6
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 3.5e-29 132.1 108 56.5
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 3.9e-28 128.6 108 54.6
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 3.9e-28 128.6 108 54.6
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 2.5e-27 125.9 142 45.1
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 5.6e-27 124.8 142 43.0
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 8.1e-26 120.9 141 42.6
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 5.2e-25 118.2 144 47.9
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 5.8e-24 114.8 130 46.2
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 2.2e-23 112.8 127 45.7
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 2.2e-23 112.8 127 45.7
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 8.4e-23 110.9 150 39.3
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 1.0e-20 104.0 82 56.1
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 3.9e-20 102.1 149 36.2
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 5.1e-20 101.7 78 59.0
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 8.7e-20 100.9 82 54.9
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.1e-19 100.5 82 57.3
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 9.6e-19 97.4 82 53.7
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 9.6e-19 97.4 86 52.3
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 3.6e-18 95.5 136 32.4
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 4.8e-18 95.1 82 53.7
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 6.2e-18 94.7 92 47.8
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.5e-16 90.1 121 32.2
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 2.0e-16 89.7 134 35.8
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 4.9e-15 85.1 142 33.8
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.1e-14 84.0 96 41.7
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 1.1e-14 84.0 72 55.6
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.9e-14 83.2 107 35.5
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 4.2e-14 82.0 132 30.3
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 7.9e-13 77.8 101 43.6
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 4.8e-10 68.6 149 29.5
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 2.4e-09 66.2 52 53.8
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 9.0e-09 64.3 72 43.1
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 7.6e-08 61.2 81 43.2
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 1.4e-06 57.0 133 24.8
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 5.5e-06 55.1 77 40.3
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 7.1e-06 54.7 136 22.1


User provided reference genes

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