Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29332 Brassica carinata HOM05D004353 ORTHO05D004989 9.9e-130 466.8 246 100.0
C04p70590 Brassica napus HOM05D004353 ORTHO05D004989 5.1e-110 401.4 247 85.8
BcaC02g07160 Brassica carinata HOM05D004353 ORTHO05D004989 3.3e-109 398.7 252 85.3
BolC4t28561H Brassica oleracea HOM05D004353 ORTHO05D004989 3.3e-109 398.7 252 85.3
BraA04t18750Z Brassica rapa HOM05D004353 ORTHO05D004989 3.3e-109 398.7 253 86.6
A04p32910 Brassica napus HOM05D004353 ORTHO05D004989 9.0e-107 390.6 253 85.0
Thhalv10001554m.g Eutrema salsugineum HOM05D004353 ORTHO05D004989 1.6e-95 353.2 266 72.9
Sp4g25730 Schrenkiella parvula HOM05D004353 ORTHO05D004989 3.9e-94 348.6 266 73.7
AT2G43630 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 2.4e-91 339.3 264 72.3
CARHR138810 Cardamine hirsuta HOM05D004353 ORTHO05D004989 3.1e-91 339.0 253 73.1
AL4G42450 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 7.0e-91 337.8 263 71.1
Carub.0004s2616 Capsella rubella HOM05D004353 ORTHO05D004989 1.6e-87 326.6 266 69.5
Aa31LG1G25350 Aethionema arabicum HOM05D004353 ORTHO05D004989 1.0e-81 307.4 265 66.0
THA.LOC104803988 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 1.0e-62 244.2 238 57.6
Sp5g03540 Schrenkiella parvula HOM05D004353 ORTHO05D004989 1.8e-62 243.4 266 54.9
THA.LOC104802322 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 1.2e-61 240.7 260 56.2
BcaC07g40471 Brassica carinata HOM05D004353 ORTHO05D004989 1.5e-56 223.8 271 49.4
BcaC07g40494 Brassica carinata HOM05D004353 ORTHO05D004989 3.3e-56 222.6 266 50.0
C08p34630 Brassica napus HOM05D004353 ORTHO05D004989 3.3e-56 222.6 266 50.0
BolC8t51065H Brassica oleracea HOM05D004353 ORTHO05D004989 3.3e-56 222.6 266 50.0
Gohir.A13G222400 Gossypium hirsutum HOM05D004353 ORTHO05D004989 6.2e-55 218.4 225 52.4
Gorai.013G257700 Gossypium raimondii HOM05D004353 ORTHO05D004989 4.0e-54 215.7 218 52.8
Gorai.011G261300 Gossypium raimondii HOM05D004353 ORTHO05D004989 5.2e-54 215.3 225 52.0
Gohir.D10G228800 Gossypium hirsutum HOM05D004353 ORTHO05D004989 2.6e-53 213.0 216 52.8
A09p51910 Brassica napus HOM05D004353 ORTHO05D004989 8.3e-52 208.0 229 52.8
BraA09t40627Z Brassica rapa HOM05D004353 ORTHO05D004989 1.4e-51 207.2 229 52.4
Cpa.g.sc9.354 Carica papaya HOM05D004353 ORTHO05D004989 1.9e-51 206.8 235 50.2
Thecc.09G282100 Theobroma cacao HOM05D004353 ORTHO05D004989 2.4e-51 206.5 241 50.2
Gohir.D13G227200 Gossypium hirsutum HOM05D004353 ORTHO05D004989 2.0e-50 203.4 208 55.8
Gorai.012G140500 Gossypium raimondii HOM05D004353 ORTHO05D004989 4.6e-50 202.2 201 55.2
AL5G41660 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 1.9e-48 196.8 232 55.2
AT3G59640 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 7.3e-48 194.9 232 55.2
Potri.006G123800 Populus trichocarpa HOM05D004353 ORTHO05D004989 2.8e-47 193.0 229 46.7
Prupe.1G205800 Prunus persica HOM05D004353 ORTHO05D004989 4.0e-46 189.1 241 48.5
QL10p053348 Quercus lobata HOM05D004353 ORTHO05D004989 8.9e-46 188.0 198 52.0
QL10p054510 Quercus lobata HOM05D004353 ORTHO05D004989 2.6e-45 186.4 257 44.4
Sabra06G0098000 Salix brachista HOM05D004353 ORTHO05D004989 4.4e-45 185.7 229 46.3
RcHm_v2.0_Chr4g0406201 Rosa chinensis HOM05D004353 ORTHO05D004989 1.3e-44 184.1 205 52.2
ClCG03G006580 Citrullus lanatus HOM05D004353 ORTHO05D004989 2.2e-44 183.3 236 51.7
FAN17G1422 Fragaria x ananassa HOM05D004353 ORTHO05D004989 4.9e-44 182.2 246 47.2
Duzib168G0981 Durio zibethinus HOM05D004353 ORTHO05D004989 6.4e-44 181.8 241 44.0
FAN07G2673 Fragaria x ananassa HOM05D004353 ORTHO05D004989 6.4e-44 181.8 246 47.6
FAN12G3936 Fragaria x ananassa HOM05D004353 ORTHO05D004989 6.4e-44 181.8 246 46.7
FAN12G4128 Fragaria x ananassa HOM05D004353 ORTHO05D004989 6.4e-44 181.8 246 46.7
FAN22G0682 Fragaria x ananassa HOM05D004353 ORTHO05D004989 6.4e-44 181.8 246 47.2
Manes.11G130500 Manihot esculenta HOM05D004353 ORTHO05D004989 8.3e-44 181.4 244 43.4
FvH4_4g10550 Fragaria vesca HOM05D004353 ORTHO05D004989 1.4e-43 180.6 246 46.7
MD15G1424100 Malus domestica HOM05D004353 ORTHO05D004989 1.9e-43 180.3 219 48.4
TWI63G0567 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 9.2e-43 177.9 258 41.1
MD08G1231200 Malus domestica HOM05D004353 ORTHO05D004989 1.6e-42 177.2 217 48.8
Prupe.1G570000 Prunus persica HOM05D004353 ORTHO05D004989 2.1e-42 176.8 205 51.2
PGR031G1729 Punica granatum HOM05D004353 ORTHO05D004989 2.7e-42 176.4 241 49.4
Eucgr.A01325 Eucalyptus grandis HOM05D004353 ORTHO05D004989 3.5e-42 176.0 225 48.9
Carub.0005s2635 Capsella rubella HOM05D004353 ORTHO05D004989 4.6e-42 175.6 232 49.6
CANSAT54G2783 Cannabis sativa HOM05D004353 ORTHO05D004989 7.8e-42 174.9 238 48.7
AUR62025025 Chenopodium quinoa HOM05D004353 ORTHO05D004989 1.3e-41 174.1 248 44.8
Cfa015265 Carpinus fangiana HOM05D004353 ORTHO05D004989 5.1e-41 172.2 226 42.0
Atru.chr6.1925 Acer truncatum HOM05D004353 ORTHO05D004989 1.1e-40 171.0 194 48.5
Oeu043896.1 Olea europaea HOM05D004353 ORTHO05D004989 4.3e-40 169.1 200 45.5
AUR62006505 Chenopodium quinoa HOM05D004353 ORTHO05D004989 7.3e-40 168.3 246 39.0
CiPaw.02G101000 Carya illinoinensis HOM05D004353 ORTHO05D004989 1.6e-39 167.2 197 50.8
Ciclev10021938m.g Citrus clementina HOM05D004353 ORTHO05D004989 2.1e-39 166.8 199 45.7
GSVIVG01038129001 Vitis vinifera HOM05D004353 ORTHO05D004989 4.7e-39 165.6 242 44.2
COL.COLO4_19851 Corchorus olitorius HOM05D004353 ORTHO05D004989 3.1e-38 162.9 239 47.7
CsaV3_1G036770 Cucumis sativus L. HOM05D004353 ORTHO05D004989 4.0e-38 162.5 226 46.5
Glyma.07G165200 Glycine max HOM05D004353 ORTHO05D004989 4.0e-38 162.5 220 48.6
Glyma.09G118100 Glycine max HOM05D004353 ORTHO05D004989 4.0e-38 162.5 220 48.6
VMungo1215G1727 Vigna mungo HOM05D004353 ORTHO05D004989 5.2e-38 162.2 237 44.7
Hma1.2p1_0017F.1_g011670 Hydrangea macrophylla HOM05D004353 ORTHO05D004989 6.8e-38 161.8 197 49.7
Sc05g0005560 Simmondsia chinensis HOM05D004353 ORTHO05D004989 2.0e-37 160.2 195 46.7
Sed0011106 Sechium edule HOM05D004353 ORTHO05D004989 2.6e-37 159.8 241 46.9
MELO3C002758.2 Cucumis melo HOM05D004353 ORTHO05D004989 7.6e-37 158.3 244 46.7
Migut.M00919 Erythranthe guttata HOM05D004353 ORTHO05D004989 9.9e-37 157.9 210 47.1
MSTRG.16235 Avicennia marina HOM05D004353 ORTHO05D004989 1.3e-36 157.5 195 51.8
Sed0022603 Sechium edule HOM05D004353 ORTHO05D004989 1.4e-35 154.1 236 44.9
Atru.chr4.1388 Acer truncatum HOM05D004353 ORTHO05D004989 1.9e-35 153.7 191 46.1
Lj2g0015848 Lotus japonicus HOM05D004353 ORTHO05D004989 1.9e-35 153.7 200 47.5
TWI15G0091 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 2.4e-35 153.3 239 42.7
Ah.03g147060 Amaranthus hybridus HOM05D004353 ORTHO05D004989 5.4e-35 152.1 188 48.9
Duzib150G0228 Durio zibethinus HOM05D004353 ORTHO05D004989 7.1e-35 151.8 235 41.3
Peaxi162Scf00008g03715 Petunia axillaris HOM05D004353 ORTHO05D004989 7.1e-35 151.8 182 47.8
TAR362G0930 Trochodendron aralioides HOM05D004353 ORTHO05D004989 7.1e-35 151.8 203 49.8
Cc04_g05110 Coffea canephora HOM05D004353 ORTHO05D004989 3.5e-34 149.4 192 49.0
unitig_61.g26169 Utricularia gibba HOM05D004353 ORTHO05D004989 6.0e-34 148.7 190 47.9
TAR633G2112 Trochodendron aralioides HOM05D004353 ORTHO05D004989 2.3e-33 146.7 208 47.6
CAN.G162.60 Capsicum annuum HOM05D004353 ORTHO05D004989 8.6e-33 144.8 182 48.9
Hund04296 Selenicereus undatus HOM05D004353 ORTHO05D004989 8.6e-33 144.8 188 49.5
Phvul.003G023800 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 3.3e-32 142.9 197 47.2
PSO017G5600 Papaver somniferum HOM05D004353 ORTHO05D004989 5.6e-32 142.1 207 41.5
BcaB02g08913 Brassica carinata HOM05D004353 ORTHO05D004989 9.6e-32 141.4 188 50.0
arahy.Tifrunner.gnm1.ann1.ZXP0UV Arachis hypogaea HOM05D004353 ORTHO05D004989 1.2e-31 141.0 244 35.7
Nitab4.5_0000214g0170 Nicotiana tabacum HOM05D004353 ORTHO05D004989 8.1e-31 138.3 182 45.1
PSO675G4101 Papaver somniferum HOM05D004353 ORTHO05D004989 1.1e-30 137.9 192 42.2
C04p04620 Brassica napus HOM05D004353 ORTHO05D004989 1.4e-30 137.5 87 79.3
Nitab4.5_0000518g0010 Nicotiana tabacum HOM05D004353 ORTHO05D004989 1.4e-30 137.5 182 45.6
Atru.chr6.1923 Acer truncatum HOM05D004353 ORTHO05D004989 1.8e-30 137.1 116 54.3
Gorai.013G194600 Gossypium raimondii HOM05D004353 ORTHO05D004989 4.0e-30 136.0 215 41.9
Solyc04g054460.3 Solanum lycopersicum HOM05D004353 ORTHO05D004989 5.2e-30 135.6 191 46.6
Sopen04g024280 Solanum pennellii HOM05D004353 ORTHO05D004989 5.2e-30 135.6 191 46.6
arahy.Tifrunner.gnm1.ann1.WL5XYL Arachis hypogaea HOM05D004353 ORTHO05D004989 1.2e-29 134.4 215 41.4
SalBow8G1390 Salvia bowleyana HOM05D004353 ORTHO05D004989 1.2e-29 134.4 176 48.3
EL10Ac6g15412 Beta vulgaris HOM05D004353 ORTHO05D004989 1.5e-29 134.0 215 44.2
Gorai.012G140700 Gossypium raimondii HOM05D004353 ORTHO05D004989 2.9e-28 129.8 102 53.9
Ca_17991_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 3.8e-28 129.4 226 41.2
RcHm_v2.0_Chr2g0115921 Rosa chinensis HOM05D004353 ORTHO05D004989 3.8e-28 129.4 202 46.5
Aqoxy3G00280 Aquilegia oxysepala HOM05D004353 ORTHO05D004989 4.9e-28 129.0 187 43.9
BolC4t22093H Brassica oleracea HOM05D004353 ORTHO05D004989 1.4e-27 127.5 87 77.0
CARHR169980 Cardamine hirsuta HOM05D004353 ORTHO05D004989 1.4e-27 127.5 127 63.8
DCAR_005473 Daucus carota HOM05D004353 ORTHO05D004989 2.4e-27 126.7 259 39.8
BcaC02g12375 Brassica carinata HOM05D004353 ORTHO05D004989 5.4e-27 125.6 200 41.5
HanXRQChr10g0307981 Helianthus annuus HOM05D004353 ORTHO05D004989 2.1e-26 123.6 190 43.2
Lalb_Chr10g0096191 Lupinus albus HOM05D004353 ORTHO05D004989 2.7e-26 123.2 188 47.3
ATR0743G161 Amborella trichopoda HOM05D004353 ORTHO05D004989 6.0e-26 122.1 196 41.3
Haze_01374 Corylus avellana HOM05D004353 ORTHO05D004989 1.3e-25 120.9 166 45.2
MBI08_g25559_MAGBIO Magnolia biondii HOM05D004353 ORTHO05D004989 1.3e-25 120.9 157 49.7
SGA_v2.0_scaffold1G00163 Striga asiatica HOM05D004353 ORTHO05D004989 2.3e-25 120.2 237 38.0
Lalb_Chr02g0158251 Lupinus albus HOM05D004353 ORTHO05D004989 8.7e-25 118.2 197 44.7
FAN19G0170 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.3e-23 114.4 208 41.3
ECA248G0230 Erigeron canadensis HOM05D004353 ORTHO05D004989 2.8e-23 113.2 194 43.8
MSTRG.19791 Avicennia marina HOM05D004353 ORTHO05D004989 4.8e-23 112.5 111 47.7
FvH4_1g21910 Fragaria vesca HOM05D004353 ORTHO05D004989 8.1e-23 111.7 171 43.9
Lalb_Chr22g0353411 Lupinus albus HOM05D004353 ORTHO05D004989 1.1e-22 111.3 212 37.7
PGSC0003DMG400005514 Solanum tuberosum HOM05D004353 ORTHO05D004989 1.1e-22 111.3 150 48.0
Lsat_1_v5_gn_5_149741 Lactuca sativa HOM05D004353 ORTHO05D004989 2.4e-22 110.2 199 38.2
Lalb_Chr21g0317861 Lupinus albus HOM05D004353 ORTHO05D004989 4.0e-22 109.4 200 43.5
FAN28G0555 Fragaria x ananassa HOM05D004353 ORTHO05D004989 4.5e-21 105.9 197 43.1
Ca_13736_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 1.3e-20 104.4 181 40.9
Nitab4.5_0001095g0110 Nicotiana tabacum HOM05D004353 ORTHO05D004989 1.7e-20 104.0 139 40.3
FAN26G0137 Fragaria x ananassa HOM05D004353 ORTHO05D004989 4.9e-20 102.4 172 44.2
CDE05G3235 Ceratophyllum demersum HOM05D004353 ORTHO05D004989 3.2e-19 99.8 134 50.7
Psat1g079080 Pisum sativum HOM05D004353 ORTHO05D004989 4.2e-19 99.4 214 39.3
Ca_02292_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 5.4e-19 99.0 181 38.1
Medtr6g012760 Medicago truncatula HOM05D004353 ORTHO05D004989 1.2e-18 97.8 215 36.3
TPR.G8801 Trifolium pratense HOM05D004353 ORTHO05D004989 4.6e-18 95.9 214 35.5
Medtr8g077030 Medicago truncatula HOM05D000149 ORTHO05D004989 1.0e-17 94.7 233 36.9
Medtr1g030860 Medicago truncatula HOM05D004353 ORTHO05D004989 1.9e-16 90.5 189 40.7
SHI23072 Sapria himalayana HOM05D004353 ORTHO05D004989 3.3e-16 89.7 162 40.7
Zm00001eb246630 Zea mays HOM05D004353 ORTHO05D004989 9.6e-16 88.2 184 31.5
Psat6g042920 Pisum sativum HOM05D004353 ORTHO05D004989 1.3e-15 87.8 215 36.3
TPR.G36930 Trifolium pratense HOM05D004353 ORTHO05D004989 4.8e-15 85.9 175 38.3
arahy.Tifrunner.gnm1.ann1.I4T7AK Arachis hypogaea HOM05D004353 ORTHO05D004989 1.8e-14 84.0 219 36.1
Os02g0606000 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 1.8e-14 84.0 185 34.1
Lj2g0004083 Lotus japonicus HOM05D004353 ORTHO05D004989 3.1e-14 83.2 198 39.9
CARHR170000 Cardamine hirsuta HOM05D004353 ORTHO05D004989 4.0e-14 82.8 67 59.7
VMungo0540G0595 Vigna mungo HOM05D004353 ORTHO05D004989 6.9e-14 82.0 197 37.6
Dinv40298 Davidia involucrata HOM05D004353 ORTHO05D004989 1.2e-13 81.3 106 50.9
arahy.Tifrunner.gnm1.ann1.35HMJH Arachis hypogaea HOM05D004353 ORTHO05D004989 1.5e-13 80.9 219 35.6
Nn1g09685 Nelumbo nucifera HOM05D004353 ORTHO05D004989 2.0e-13 80.5 82 41.5
Zm00001eb184150 Zea mays HOM05D004353 ORTHO05D004989 3.4e-13 79.7 241 32.0
Glyma.09G032300 Glycine max HOM05D004353 ORTHO05D004989 5.8e-13 79.0 215 37.2
AUR62039440 Chenopodium quinoa HOM05D004353 ORTHO05D004989 9.9e-13 78.2 67 49.3
Phvul.006G120600 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 4.2e-11 72.8 169 37.9
HPP92_005597 Vanilla planifolia HOM05D004353 ORTHO05D004989 9.3e-11 71.6 207 32.4
Os04g0493300 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 7.9e-10 68.6 245 33.1
Actinidia06605 Actinidia chinensis HOM05D004353 ORTHO05D004989 1.0e-09 68.2 191 32.5
Atru.chr4.262 Acer truncatum HOM05D004353 ORTHO05D004989 1.3e-09 67.8 102 50.0
HPP92_005578 Vanilla planifolia HOM05D004353 ORTHO05D004989 1.3e-09 67.8 176 33.0
Glyma.15G137300 Glycine max HOM05D004353 ORTHO05D004989 5.1e-09 65.9 213 33.3
C08p34640 Brassica napus HOM05D004353 ORTHO05D004989 1.9e-08 63.9 55 47.3
MD10G1168700 Malus domestica HOM05D004353 ORTHO05D004989 4.8e-07 59.3 72 48.6


User provided reference genes

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