Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29323 Brassica carinata HOM05D007394 ORTHO05D009996 3.8e-107 391.3 178 100.0
C04p04550 Brassica napus HOM05D007394 ORTHO05D009996 9.9e-47 190.7 157 55.4
Aa31LG1G25260 Aethionema arabicum HOM05D007394 ORTHO05D009996 1.9e-34 149.8 183 41.0
Aa31LG1G25280 Aethionema arabicum HOM05D007459 ORTHO05D009234 1.9e-34 149.8 135 51.1
BcaB06g29322 Brassica carinata HOM05D007394 ORTHO05D009996 2.5e-26 122.9 76 69.7
Sp4g25610 Schrenkiella parvula HOM05D007394 ORTHO05D009996 2.5e-26 122.9 80 65.0
C04p70500 Brassica napus HOM05D007394 ORTHO05D009996 9.7e-26 120.9 79 65.8
BcaC02g07172 Brassica carinata HOM05D007394 ORTHO05D009996 1.3e-25 120.6 75 69.3
BcaB02g10434 Brassica carinata HOM05D007394 ORTHO05D009996 3.7e-25 119.0 79 62.0
BcaB06g29321 Brassica carinata HOM05D007394 ORTHO05D009996 6.3e-25 118.2 73 68.5
CARHR138610 Cardamine hirsuta HOM05D007394 ORTHO05D009996 1.1e-24 117.5 71 64.8
Sp4g25600 Schrenkiella parvula HOM05D007394 ORTHO05D009996 1.1e-24 117.5 71 63.4
A04p32790 Brassica napus HOM05D007394 ORTHO05D009996 1.4e-24 117.1 79 63.3
A04p32800 Brassica napus HOM05D007394 ORTHO05D009996 1.4e-24 117.1 77 62.3
BraA04t18742Z Brassica rapa HOM05D007394 ORTHO05D009996 1.4e-24 117.1 77 62.3
Thhalv10001746m.g Eutrema salsugineum HOM05D007394 ORTHO05D009996 1.4e-24 117.1 71 66.2
A05p03820 Brassica napus HOM05D007394 ORTHO05D009996 3.1e-24 115.9 71 62.0
BcaC02g12384 Brassica carinata HOM05D007394 ORTHO05D009996 6.9e-24 114.8 71 60.6
BcaC02g12386 Brassica carinata HOM05D007394 ORTHO05D009996 6.9e-24 114.8 71 60.6
C04p04520 Brassica napus HOM05D007394 ORTHO05D009996 6.9e-24 114.8 71 60.6
C04p04540 Brassica napus HOM05D007394 ORTHO05D009996 6.9e-24 114.8 71 60.6
BolC4t22087H Brassica oleracea HOM05D007394 ORTHO05D009996 6.9e-24 114.8 71 60.6
AT2G43510 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 1.2e-23 114.0 71 60.6
BcaB02g08934 Brassica carinata HOM05D007394 ORTHO05D009996 1.2e-23 114.0 71 60.6
AL2G24960 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 2.0e-23 113.2 71 63.4
BcaB02g08929 Brassica carinata HOM05D007394 ORTHO05D009996 2.6e-23 112.8 80 62.5
AL4G42300 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 5.9e-23 111.7 71 60.6
BraA05t19373Z Brassica rapa HOM05D007394 ORTHO05D009996 1.3e-22 110.5 79 63.3
BcaB06g29320 Brassica carinata HOM05D007394 ORTHO05D009996 1.7e-22 110.2 79 63.3
A04p32810 Brassica napus HOM05D007394 ORTHO05D009996 2.9e-22 109.4 83 61.4
C04p04590 Brassica napus HOM05D007394 ORTHO05D009996 2.9e-22 109.4 79 62.0
BolC4t22090H Brassica oleracea HOM05D007394 ORTHO05D009996 2.9e-22 109.4 79 62.0
BraA04t18743Z Brassica rapa HOM05D007394 ORTHO05D009996 2.9e-22 109.4 83 61.4
Carub.0004s2597 Capsella rubella HOM05D007394 ORTHO05D009996 3.8e-22 109.0 71 59.2
BcaC02g12378 Brassica carinata HOM05D007394 ORTHO05D009996 5.0e-22 108.6 79 60.8
AT2G43535 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 8.5e-22 107.8 67 65.7
BcaB02g08928 Brassica carinata HOM05D007394 ORTHO05D009996 1.1e-21 107.5 81 56.8
BcaC02g12382 Brassica carinata HOM05D007394 ORTHO05D009996 1.1e-21 107.5 80 58.8
A05p03840 Brassica napus HOM05D007394 ORTHO05D009996 1.1e-21 107.5 81 56.8
BraA05t19371Z Brassica rapa HOM05D007394 ORTHO05D009996 1.1e-21 107.5 81 56.8
BcaC02g12381 Brassica carinata HOM05D007394 ORTHO05D009996 3.2e-21 105.9 78 59.0
C04p70530 Brassica napus HOM05D007394 ORTHO05D009996 3.2e-21 105.9 83 60.2
A05p03830 Brassica napus HOM05D007394 ORTHO05D009996 4.2e-21 105.5 78 59.0
BcaB02g08930 Brassica carinata HOM05D007394 ORTHO05D009996 1.6e-20 103.6 84 56.0
BolC4t28552H Brassica oleracea HOM05D007394 ORTHO05D009996 1.6e-20 103.6 83 59.0
CARHR138620 Cardamine hirsuta HOM05D007394 ORTHO05D009996 3.6e-20 102.4 75 54.7
Sp3g24100 Schrenkiella parvula HOM05D007394 ORTHO05D009996 6.1e-20 101.7 71 59.2
BraA03t11638Z Brassica rapa HOM05D007394 ORTHO05D009996 7.9e-20 101.3 71 59.2
A03p24300 Brassica napus HOM05D007394 ORTHO05D009996 1.0e-19 100.9 71 59.2
BraA03t11640Z Brassica rapa HOM05D007394 ORTHO05D009996 1.0e-19 100.9 71 59.2
Carub.0004s2602 Capsella rubella HOM05D007394 ORTHO05D009996 1.0e-19 100.9 70 57.1
A03p24290 Brassica napus HOM05D007394 ORTHO05D009996 3.9e-19 99.0 73 57.5
BraA03t11637Z Brassica rapa HOM05D007394 ORTHO05D009996 3.9e-19 99.0 73 57.5
BraA03t11639Z Brassica rapa HOM05D007394 ORTHO05D009996 3.9e-19 99.0 73 57.5
CARHR138640 Cardamine hirsuta HOM05D007394 ORTHO05D009996 3.9e-19 99.0 72 58.3
BcaB01g03378 Brassica carinata HOM05D007394 ORTHO05D009996 8.8e-19 97.8 70 61.4
AL1G53780 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 1.5e-18 97.1 79 54.4
AL4G42320 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 2.6e-18 96.3 79 57.0
Sp3g24200 Schrenkiella parvula HOM05D007394 ORTHO05D009996 2.6e-18 96.3 71 60.6
Carub.0004s2599 Capsella rubella HOM05D007394 ORTHO05D009996 3.3e-18 95.9 70 54.3
AT1G47540 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 4.4e-18 95.5 79 54.4
THA.LOC104803932 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 5.7e-18 95.1 71 53.5
BcaC02g07171 Brassica carinata HOM05D007394 ORTHO05D009996 9.7e-18 94.4 88 54.5
THA.LOC109116252 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 1.3e-17 94.0 68 54.4
THA.LOC104803941 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 2.2e-17 93.2 71 53.5
AL4G42310 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 2.8e-17 92.8 73 54.8
Carub.0004s2598 Capsella rubella HOM05D007394 ORTHO05D009996 2.8e-17 92.8 73 53.4
Carub.0002s0551 Capsella rubella HOM05D007394 ORTHO05D009996 1.1e-16 90.9 70 52.9
AL8G26520 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 1.4e-16 90.5 69 53.6
AT2G43520 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 1.4e-16 90.5 73 53.4
BcaC01g05230 Brassica carinata HOM05D007394 ORTHO05D009996 2.4e-16 89.7 72 54.2
Thhalv10001697m.g Eutrema salsugineum HOM05D007394 ORTHO05D009996 9.1e-16 87.8 63 60.3
Aa31LG1G24860 Aethionema arabicum HOM05D007394 ORTHO05D009996 1.2e-15 87.4 64 56.2
THA.LOC104798701 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 1.3e-14 84.0 67 55.2
CARHR138630 Cardamine hirsuta HOM05D007394 ORTHO05D009996 3.8e-14 82.4 74 50.0
THA.LOC104805814 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 6.5e-14 81.6 74 47.3
BcaC02g07168 Brassica carinata HOM05D007459 ORTHO05D009234 1.2e-12 77.4 52 55.8
CARHR138650 Cardamine hirsuta HOM05D007394 ORTHO05D009996 6.1e-12 75.1 102 36.3
Carub.0004s2604 Capsella rubella HOM05D007394 ORTHO05D009996 3.9e-11 72.4 90 41.1
A04p32770 Brassica napus HOM05D007394 ORTHO05D033140 1.3e-09 67.4 72 48.6
BraA04t18740Z Brassica rapa HOM05D007394 ORTHO05D033140 1.3e-09 67.4 72 48.6
BolC3t15251H Brassica oleracea HOM05D007394 ORTHO05D009996 2.8e-09 66.2 53 56.6
Carub.0004s2601 Capsella rubella HOM05D007394 ORTHO05D009996 2.8e-09 66.2 70 47.1
THA.LOC104803922 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 2.8e-09 66.2 69 46.4
AT2G43530 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 3.7e-09 65.9 70 45.7
AL4G42350 Arabidopsis lyrata HOM05D007394 ORTHO05D015383 6.3e-09 65.1 69 46.4
Sp4g02290 Schrenkiella parvula HOM05D007394 ORTHO05D009234 1.1e-08 64.3 83 36.1
AT2G43550 Arabidopsis thaliana HOM05D007394 ORTHO05D015383 1.4e-08 63.9 70 44.3
THA.LOC104803915 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 1.4e-08 63.9 70 42.9
C04p70540 Brassica napus HOM05D007394 ORTHO05D015383 2.4e-08 63.2 69 43.5
BcaB06g29326 Brassica carinata HOM05D007394 ORTHO05D015383 5.3e-08 62.0 70 42.9
CARHR138680 Cardamine hirsuta HOM05D007394 ORTHO05D015383 7.0e-08 61.6 65 43.1
BolC4t28551H Brassica oleracea HOM05D007394 ORTHO05D033140 9.1e-08 61.2 73 46.6
Carub.0004s2603 Capsella rubella HOM05D007394 ORTHO05D015383 9.1e-08 61.2 69 43.5
Thhalv10001696m.g Eutrema salsugineum HOM05D007394 ORTHO05D015383 9.1e-08 61.2 59 44.1
Sp4g25660 Schrenkiella parvula HOM05D007394 ORTHO05D015383 1.2e-07 60.8 70 40.0
BcaC02g07166 Brassica carinata HOM05D007394 ORTHO05D015383 1.6e-07 60.5 69 42.0
A04p32830 Brassica napus HOM05D007394 ORTHO05D015383 1.6e-07 60.5 69 42.0
BolC4t28555H Brassica oleracea HOM05D007394 ORTHO05D015383 1.6e-07 60.5 69 42.0
BraA04t18745Z Brassica rapa HOM05D007394 ORTHO05D015383 1.6e-07 60.5 69 42.0
A04p02110 Brassica napus HOM05D014590 ORTHO05D017585 1.3e-06 57.4 82 40.2
BraA04t15937Z Brassica rapa HOM05D014590 ORTHO05D017585 1.3e-06 57.4 82 40.2
BcaC02g10070 Brassica carinata HOM05D014590 ORTHO05D017585 6.5e-06 55.1 82 39.0


User provided reference genes

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