Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29321 Brassica carinata HOM05D007394 ORTHO05D009996 4.9e-43 177.2 77 100.0
BcaB06g29322 Brassica carinata HOM05D007394 ORTHO05D009996 1.3e-40 169.1 73 98.6
A04p32800 Brassica napus HOM05D007394 ORTHO05D009996 1.5e-39 165.6 77 90.9
BraA04t18742Z Brassica rapa HOM05D007394 ORTHO05D009996 1.5e-39 165.6 77 90.9
Sp4g25610 Schrenkiella parvula HOM05D007394 ORTHO05D009996 8.7e-32 139.8 73 78.1
Sp4g25600 Schrenkiella parvula HOM05D007394 ORTHO05D009996 1.4e-29 132.5 66 80.3
BcaC02g12378 Brassica carinata HOM05D007394 ORTHO05D009996 2.4e-29 131.7 78 73.1
C04p04590 Brassica napus HOM05D007394 ORTHO05D009996 2.4e-29 131.7 78 73.1
BolC4t22090H Brassica oleracea HOM05D007394 ORTHO05D009996 2.4e-29 131.7 78 73.1
BraA05t19373Z Brassica rapa HOM05D007394 ORTHO05D009996 2.4e-29 131.7 78 73.1
BcaB02g08929 Brassica carinata HOM05D007394 ORTHO05D009996 4.5e-28 127.5 79 68.4
AT2G43535 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 3.8e-27 124.4 73 65.8
BcaC02g12384 Brassica carinata HOM05D007394 ORTHO05D009996 6.5e-27 123.6 66 72.7
C04p04540 Brassica napus HOM05D007394 ORTHO05D009996 6.5e-27 123.6 66 72.7
BolC4t22087H Brassica oleracea HOM05D007394 ORTHO05D009996 6.5e-27 123.6 66 72.7
CARHR138610 Cardamine hirsuta HOM05D007394 ORTHO05D009996 6.5e-27 123.6 65 75.4
BcaB02g10434 Brassica carinata HOM05D007394 ORTHO05D009996 8.4e-27 123.2 75 69.3
BcaC02g12386 Brassica carinata HOM05D007394 ORTHO05D009996 8.4e-27 123.2 66 71.2
A05p03820 Brassica napus HOM05D007394 ORTHO05D009996 8.4e-27 123.2 66 71.2
C04p04520 Brassica napus HOM05D007394 ORTHO05D009996 8.4e-27 123.2 66 71.2
Thhalv10001746m.g Eutrema salsugineum HOM05D007394 ORTHO05D009996 8.4e-27 123.2 66 72.7
A04p32790 Brassica napus HOM05D007394 ORTHO05D009996 1.1e-26 122.9 73 74.0
BcaB02g08934 Brassica carinata HOM05D007394 ORTHO05D009996 1.4e-26 122.5 66 71.2
BcaB01g03378 Brassica carinata HOM05D007394 ORTHO05D009996 1.9e-26 122.1 68 76.5
A05p03830 Brassica napus HOM05D007394 ORTHO05D009996 2.5e-26 121.7 77 68.8
AL4G42300 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 3.2e-26 121.3 65 73.8
AT2G43510 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 5.5e-26 120.6 65 72.3
BcaC02g07172 Brassica carinata HOM05D007394 ORTHO05D009996 5.5e-26 120.6 73 71.2
AL2G24960 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 2.7e-25 118.2 65 73.8
BcaB06g29323 Brassica carinata HOM05D007394 ORTHO05D009996 2.7e-25 118.2 73 68.5
BcaC02g12382 Brassica carinata HOM05D007394 ORTHO05D009996 2.7e-25 118.2 79 64.6
A03p24300 Brassica napus HOM05D007394 ORTHO05D009996 3.5e-25 117.9 65 73.8
C04p70500 Brassica napus HOM05D007394 ORTHO05D009996 3.5e-25 117.9 73 69.9
BraA03t11640Z Brassica rapa HOM05D007394 ORTHO05D009996 3.5e-25 117.9 65 73.8
A03p24290 Brassica napus HOM05D007394 ORTHO05D009996 4.6e-25 117.5 68 72.1
BraA03t11637Z Brassica rapa HOM05D007394 ORTHO05D009996 4.6e-25 117.5 68 72.1
BraA03t11639Z Brassica rapa HOM05D007394 ORTHO05D009996 4.6e-25 117.5 68 72.1
Carub.0004s2602 Capsella rubella HOM05D007394 ORTHO05D009996 4.6e-25 117.5 72 63.9
BraA03t11638Z Brassica rapa HOM05D007394 ORTHO05D009996 1.0e-24 116.3 65 72.3
Sp3g24100 Schrenkiella parvula HOM05D007394 ORTHO05D009996 1.0e-24 116.3 70 68.6
BcaB02g08928 Brassica carinata HOM05D007394 ORTHO05D009996 1.8e-24 115.5 73 68.5
BcaC02g12381 Brassica carinata HOM05D007394 ORTHO05D009996 1.8e-24 115.5 73 68.5
A05p03840 Brassica napus HOM05D007394 ORTHO05D009996 1.8e-24 115.5 73 68.5
C04p04550 Brassica napus HOM05D007394 ORTHO05D009996 1.8e-24 115.5 73 68.5
BraA05t19371Z Brassica rapa HOM05D007394 ORTHO05D009996 1.8e-24 115.5 73 68.5
Carub.0004s2597 Capsella rubella HOM05D007394 ORTHO05D009996 1.8e-24 115.5 65 69.2
A04p32810 Brassica napus HOM05D007394 ORTHO05D009996 5.1e-24 114.0 76 67.1
BraA04t18743Z Brassica rapa HOM05D007394 ORTHO05D009996 5.1e-24 114.0 76 67.1
BcaB02g08930 Brassica carinata HOM05D007394 ORTHO05D009996 6.7e-24 113.6 83 63.9
AT1G47540 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 1.5e-23 112.5 74 63.5
AL4G42320 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 2.5e-23 111.7 76 63.2
CARHR138620 Cardamine hirsuta HOM05D007394 ORTHO05D009996 4.3e-23 110.9 70 62.9
C04p70530 Brassica napus HOM05D007394 ORTHO05D009996 5.7e-23 110.5 76 65.8
Carub.0004s2598 Capsella rubella HOM05D007394 ORTHO05D009996 5.7e-23 110.5 68 69.1
AL4G42310 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 7.4e-23 110.2 68 69.1
AL1G53780 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 1.6e-22 109.0 74 62.2
BolC4t28552H Brassica oleracea HOM05D007394 ORTHO05D009996 2.8e-22 108.2 76 64.5
Thhalv10001697m.g Eutrema salsugineum HOM05D007394 ORTHO05D009996 2.8e-22 108.2 63 73.0
AL8G26520 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 3.7e-22 107.8 71 63.4
AT2G43520 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 3.7e-22 107.8 68 67.6
BcaC01g05230 Brassica carinata HOM05D007394 ORTHO05D009996 4.8e-22 107.5 64 71.9
CARHR138630 Cardamine hirsuta HOM05D007394 ORTHO05D009996 1.4e-21 105.9 71 64.8
BcaB06g29320 Brassica carinata HOM05D007394 ORTHO05D009996 3.1e-21 104.8 72 65.3
THA.LOC104803932 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 4.1e-21 104.4 66 62.1
CARHR138640 Cardamine hirsuta HOM05D007394 ORTHO05D009996 9.0e-21 103.2 69 59.4
THA.LOC109116252 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 9.0e-21 103.2 66 63.6
Carub.0004s2599 Capsella rubella HOM05D007394 ORTHO05D009996 1.2e-20 102.8 66 62.1
Aa31LG1G24860 Aethionema arabicum HOM05D007394 ORTHO05D009996 2.0e-20 102.1 62 66.1
Aa31LG1G25280 Aethionema arabicum HOM05D007459 ORTHO05D009234 2.0e-20 102.1 63 65.1
THA.LOC104803941 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 2.0e-20 102.1 66 63.6
Carub.0002s0551 Capsella rubella HOM05D007394 ORTHO05D009996 1.7e-19 99.0 68 58.8
BcaC02g07171 Brassica carinata HOM05D007394 ORTHO05D009996 2.2e-19 98.6 81 58.0
THA.LOC104798701 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 5.0e-19 97.4 66 62.1
Aa31LG1G25260 Aethionema arabicum HOM05D007394 ORTHO05D009996 6.5e-19 97.1 49 79.6
Sp3g24200 Schrenkiella parvula HOM05D007394 ORTHO05D009996 2.5e-18 95.1 67 62.7
THA.LOC104805814 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 3.6e-17 91.3 64 60.9
BolC3t15251H Brassica oleracea HOM05D007394 ORTHO05D009996 7.9e-17 90.1 48 79.2
BcaC02g07168 Brassica carinata HOM05D007459 ORTHO05D009234 2.3e-16 88.6 48 72.9
CARHR138650 Cardamine hirsuta HOM05D007394 ORTHO05D009996 3.7e-14 81.3 73 45.2
Carub.0004s2604 Capsella rubella HOM05D007394 ORTHO05D009996 2.4e-13 78.6 78 48.7
AT2G43530 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 4.1e-13 77.8 66 54.5
THA.LOC104803915 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 2.0e-12 75.5 68 48.5
THA.LOC104803922 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 2.0e-12 75.5 59 54.2
Sp4g02290 Schrenkiella parvula HOM05D007394 ORTHO05D009234 2.6e-12 75.1 72 50.0
Thhalv10001696m.g Eutrema salsugineum HOM05D007394 ORTHO05D015383 7.7e-12 73.6 63 44.4
AT2G43550 Arabidopsis thaliana HOM05D007394 ORTHO05D015383 1.0e-11 73.2 64 46.9
C04p70540 Brassica napus HOM05D007394 ORTHO05D015383 1.0e-11 73.2 57 49.1
Sp4g25660 Schrenkiella parvula HOM05D007394 ORTHO05D015383 1.0e-11 73.2 66 45.5
BcaB06g29326 Brassica carinata HOM05D007394 ORTHO05D015383 1.3e-11 72.8 57 49.1
BcaC02g07166 Brassica carinata HOM05D007394 ORTHO05D015383 1.3e-11 72.8 57 49.1
A04p32830 Brassica napus HOM05D007394 ORTHO05D015383 1.3e-11 72.8 57 49.1
BolC4t28555H Brassica oleracea HOM05D007394 ORTHO05D015383 1.3e-11 72.8 57 49.1
BraA04t18745Z Brassica rapa HOM05D007394 ORTHO05D015383 1.3e-11 72.8 57 49.1
Carub.0004s2601 Capsella rubella HOM05D007394 ORTHO05D009996 1.7e-11 72.4 63 52.4
CARHR138680 Cardamine hirsuta HOM05D007394 ORTHO05D015383 2.2e-11 72.0 63 47.6
AL4G42350 Arabidopsis lyrata HOM05D007394 ORTHO05D015383 2.9e-11 71.6 63 47.6
Carub.0004s2603 Capsella rubella HOM05D007394 ORTHO05D015383 5.0e-11 70.9 57 47.4
CARHR123510 Cardamine hirsuta HOM05D014590 ORTHO05D017585 2.0e-07 58.9 60 53.3
C04p70470 Brassica napus HOM05D007394 ORTHO05D009234 2.6e-07 58.5 72 43.1
A04p32770 Brassica napus HOM05D007394 ORTHO05D033140 2.8e-06 55.1 66 48.5
BraA04t18740Z Brassica rapa HOM05D007394 ORTHO05D033140 2.8e-06 55.1 66 48.5


User provided reference genes

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