Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29320 Brassica carinata HOM05D007394 ORTHO05D009996 1.9e-52 208.8 97 100.0
C04p70500 Brassica napus HOM05D007394 ORTHO05D009996 1.8e-42 175.6 98 82.7
A04p32790 Brassica napus HOM05D007394 ORTHO05D009996 7.6e-41 170.2 96 82.3
Sp4g25610 Schrenkiella parvula HOM05D007394 ORTHO05D009996 2.6e-33 145.2 97 72.2
BcaC02g07172 Brassica carinata HOM05D007394 ORTHO05D009996 8.4e-32 140.2 74 81.1
AL1G53780 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 2.1e-30 135.6 99 66.7
AT1G47540 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 2.7e-30 135.2 99 66.7
A05p03830 Brassica napus HOM05D007394 ORTHO05D009996 6.7e-29 130.6 97 63.9
BcaB02g08929 Brassica carinata HOM05D007394 ORTHO05D009996 8.7e-29 130.2 99 62.6
A05p03840 Brassica napus HOM05D007394 ORTHO05D009996 8.7e-29 130.2 100 62.0
A03p24300 Brassica napus HOM05D007394 ORTHO05D009996 2.5e-28 128.6 89 70.8
BraA03t11640Z Brassica rapa HOM05D007394 ORTHO05D009996 2.5e-28 128.6 89 70.8
Thhalv10001746m.g Eutrema salsugineum HOM05D007394 ORTHO05D009996 2.5e-28 128.6 90 63.3
A04p32810 Brassica napus HOM05D007394 ORTHO05D009996 3.3e-28 128.3 102 63.7
BraA04t18743Z Brassica rapa HOM05D007394 ORTHO05D009996 3.3e-28 128.3 102 63.7
CARHR138620 Cardamine hirsuta HOM05D007394 ORTHO05D009996 3.3e-28 128.3 92 58.7
BraA05t19371Z Brassica rapa HOM05D007394 ORTHO05D009996 4.3e-28 127.9 100 61.0
BcaB02g08928 Brassica carinata HOM05D007394 ORTHO05D009996 5.6e-28 127.5 100 61.0
BraA03t11638Z Brassica rapa HOM05D007394 ORTHO05D009996 7.4e-28 127.1 89 69.7
Sp4g25600 Schrenkiella parvula HOM05D007394 ORTHO05D009996 2.8e-27 125.2 85 63.5
BolC4t28552H Brassica oleracea HOM05D007394 ORTHO05D009996 3.7e-27 124.8 102 62.7
BcaC01g05230 Brassica carinata HOM05D007394 ORTHO05D009996 4.8e-27 124.4 89 69.7
BcaC02g12378 Brassica carinata HOM05D007394 ORTHO05D009996 4.8e-27 124.4 98 62.2
A04p32800 Brassica napus HOM05D007394 ORTHO05D009996 4.8e-27 124.4 97 62.9
C04p70530 Brassica napus HOM05D007394 ORTHO05D009996 4.8e-27 124.4 102 61.8
BraA04t18742Z Brassica rapa HOM05D007394 ORTHO05D009996 4.8e-27 124.4 97 62.9
Carub.0004s2598 Capsella rubella HOM05D007394 ORTHO05D009996 8.1e-27 123.6 92 60.9
BcaB02g10434 Brassica carinata HOM05D007394 ORTHO05D009996 1.4e-26 122.9 101 59.4
BcaC02g12382 Brassica carinata HOM05D007394 ORTHO05D009996 1.4e-26 122.9 99 59.6
C04p04550 Brassica napus HOM05D007394 ORTHO05D009996 1.4e-26 122.9 99 59.6
A05p03820 Brassica napus HOM05D007394 ORTHO05D009996 1.8e-26 122.5 88 59.1
AL4G42320 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 2.4e-26 122.1 95 61.1
BcaB02g08934 Brassica carinata HOM05D007394 ORTHO05D009996 3.1e-26 121.7 88 59.1
BcaC02g12386 Brassica carinata HOM05D007394 ORTHO05D009996 4.0e-26 121.3 88 58.0
C04p04520 Brassica napus HOM05D007394 ORTHO05D009996 4.0e-26 121.3 88 58.0
AL2G24960 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 6.9e-26 120.6 90 61.1
C04p04590 Brassica napus HOM05D007394 ORTHO05D009996 1.2e-25 119.8 99 61.6
BraA05t19373Z Brassica rapa HOM05D007394 ORTHO05D009996 1.2e-25 119.8 97 61.9
AL4G42310 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 1.5e-25 119.4 90 61.1
Carub.0004s2602 Capsella rubella HOM05D007394 ORTHO05D009996 1.5e-25 119.4 89 60.7
CARHR138610 Cardamine hirsuta HOM05D007394 ORTHO05D009996 1.5e-25 119.4 91 59.3
AT2G43510 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 2.0e-25 119.0 88 59.1
BcaC02g12381 Brassica carinata HOM05D007394 ORTHO05D009996 2.0e-25 119.0 101 58.4
Aa31LG1G25280 Aethionema arabicum HOM05D007459 ORTHO05D009234 3.4e-25 118.2 84 63.1
AL4G42300 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 3.4e-25 118.2 88 60.2
BcaB02g08930 Brassica carinata HOM05D007394 ORTHO05D009996 3.4e-25 118.2 103 58.3
BcaC02g07171 Brassica carinata HOM05D007394 ORTHO05D009996 3.4e-25 118.2 107 59.8
BolC4t22090H Brassica oleracea HOM05D007394 ORTHO05D009996 3.4e-25 118.2 99 60.6
Thhalv10001697m.g Eutrema salsugineum HOM05D007394 ORTHO05D009996 4.5e-25 117.9 88 63.6
C04p04540 Brassica napus HOM05D007394 ORTHO05D009996 7.6e-25 117.1 90 57.8
BolC4t22087H Brassica oleracea HOM05D007394 ORTHO05D009996 7.6e-25 117.1 90 57.8
Sp3g24100 Schrenkiella parvula HOM05D007394 ORTHO05D009996 9.9e-25 116.7 95 56.8
BcaC02g12384 Brassica carinata HOM05D007394 ORTHO05D009996 1.3e-24 116.3 88 59.1
A03p24290 Brassica napus HOM05D007394 ORTHO05D009996 2.2e-24 115.5 93 61.3
BraA03t11637Z Brassica rapa HOM05D007394 ORTHO05D009996 2.2e-24 115.5 93 61.3
BraA03t11639Z Brassica rapa HOM05D007394 ORTHO05D009996 2.2e-24 115.5 93 61.3
Carub.0004s2597 Capsella rubella HOM05D007394 ORTHO05D009996 2.9e-24 115.2 85 56.5
Aa31LG1G25260 Aethionema arabicum HOM05D007394 ORTHO05D009996 4.9e-24 114.4 72 69.4
AT2G43520 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 4.9e-24 114.4 90 58.9
BcaB06g29322 Brassica carinata HOM05D007394 ORTHO05D009996 1.4e-23 112.8 75 68.0
BcaB06g29323 Brassica carinata HOM05D007394 ORTHO05D009996 3.2e-23 111.7 79 63.3
Carub.0002s0551 Capsella rubella HOM05D007394 ORTHO05D009996 3.2e-23 111.7 89 51.7
Carub.0004s2599 Capsella rubella HOM05D007394 ORTHO05D009996 3.2e-23 111.7 89 51.7
AT2G43535 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 4.2e-23 111.3 67 68.7
CARHR138630 Cardamine hirsuta HOM05D007394 ORTHO05D009996 5.5e-23 110.9 88 61.4
THA.LOC104798701 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 1.6e-22 109.4 88 58.0
CARHR138640 Cardamine hirsuta HOM05D007394 ORTHO05D009996 2.1e-22 109.0 96 56.2
BcaB06g29321 Brassica carinata HOM05D007394 ORTHO05D009996 7.9e-22 107.1 72 65.3
THA.LOC104803941 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 1.3e-21 106.3 85 55.3
THA.LOC104803932 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 3.0e-21 105.1 85 55.3
BcaC02g07168 Brassica carinata HOM05D007459 ORTHO05D009234 3.9e-21 104.8 76 63.2
THA.LOC109116252 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 3.9e-21 104.8 90 52.2
BcaB01g03378 Brassica carinata HOM05D007394 ORTHO05D009996 8.7e-21 103.6 93 55.9
THA.LOC104805814 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 8.7e-21 103.6 96 49.0
Sp3g24200 Schrenkiella parvula HOM05D007394 ORTHO05D009996 1.1e-20 103.2 89 55.1
BolC3t15251H Brassica oleracea HOM05D007394 ORTHO05D009996 1.5e-20 102.8 71 74.6
Aa31LG1G24860 Aethionema arabicum HOM05D007394 ORTHO05D009996 9.6e-20 100.1 64 64.1
AL8G26520 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 1.6e-19 99.4 93 50.5
AT2G43550 Arabidopsis thaliana HOM05D007394 ORTHO05D015383 1.3e-16 89.7 88 50.0
CARHR138650 Cardamine hirsuta HOM05D007394 ORTHO05D009996 1.7e-16 89.4 89 44.9
AL4G42350 Arabidopsis lyrata HOM05D007394 ORTHO05D015383 2.2e-16 89.0 87 49.4
Carub.0004s2603 Capsella rubella HOM05D007394 ORTHO05D015383 2.9e-16 88.6 87 49.4
AT2G43530 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 1.4e-15 86.3 87 51.7
CARHR138680 Cardamine hirsuta HOM05D007394 ORTHO05D015383 2.5e-15 85.5 87 48.3
BcaB06g29326 Brassica carinata HOM05D007394 ORTHO05D015383 5.5e-15 84.3 88 48.9
BcaC02g07166 Brassica carinata HOM05D007394 ORTHO05D015383 5.5e-15 84.3 88 48.9
BolC4t28555H Brassica oleracea HOM05D007394 ORTHO05D015383 5.5e-15 84.3 88 48.9
A04p32830 Brassica napus HOM05D007394 ORTHO05D015383 7.1e-15 84.0 88 48.9
BraA04t18745Z Brassica rapa HOM05D007394 ORTHO05D015383 7.1e-15 84.0 88 48.9
Sp4g25660 Schrenkiella parvula HOM05D007394 ORTHO05D015383 7.1e-15 84.0 86 47.7
Thhalv10001696m.g Eutrema salsugineum HOM05D007394 ORTHO05D015383 1.6e-14 82.8 89 47.2
C04p70540 Brassica napus HOM05D007394 ORTHO05D015383 2.7e-14 82.0 88 48.9
BcaB06g29325 Brassica carinata HOM05D007394 ORTHO05D032247 4.6e-14 81.3 85 43.5
Carub.0004s2604 Capsella rubella HOM05D007394 ORTHO05D009996 3.9e-13 78.2 92 45.7
THA.LOC104803915 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 1.5e-12 76.3 89 41.6
Sp4g02290 Schrenkiella parvula HOM05D007394 ORTHO05D009234 4.3e-12 74.7 90 45.6
CARHR123510 Cardamine hirsuta HOM05D014590 ORTHO05D017585 5.7e-12 74.3 97 38.1
THA.LOC104803922 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 1.6e-11 72.8 86 43.0
Carub.0004s2601 Capsella rubella HOM05D007394 ORTHO05D009996 6.3e-11 70.9 87 46.0
A04p32760 Brassica napus HOM05D007394 ORTHO05D009234 2.4e-10 68.9 94 45.7
C04p70470 Brassica napus HOM05D007394 ORTHO05D009234 4.1e-10 68.2 94 45.7
A04p02110 Brassica napus HOM05D014590 ORTHO05D017585 7.6e-09 63.9 96 38.5
BraA04t15937Z Brassica rapa HOM05D014590 ORTHO05D017585 7.6e-09 63.9 96 38.5
A04p32770 Brassica napus HOM05D007394 ORTHO05D033140 1.7e-08 62.8 90 44.4
BraA04t18740Z Brassica rapa HOM05D007394 ORTHO05D033140 1.7e-08 62.8 90 44.4
BcaC02g10070 Brassica carinata HOM05D014590 ORTHO05D017585 1.1e-07 60.1 92 34.8
BolC4t28551H Brassica oleracea HOM05D007394 ORTHO05D033140 9.3e-07 57.0 90 37.8


User provided reference genes

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