Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 4.6e-40 167.5 90 100.0
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 1.1e-38 162.9 90 97.8
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 9.5e-38 159.8 90 96.7
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 9.5e-38 159.8 90 96.7
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 1.6e-37 159.1 90 96.7
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 1.6e-37 159.1 90 96.7
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 1.6e-37 159.1 90 96.7
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 1.4e-36 156.0 90 94.4
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 6.8e-36 153.7 90 92.2
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 1.5e-35 152.5 84 96.4
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 2.9e-34 148.3 90 88.9
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 1.6e-32 142.5 90 83.3
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 6.0e-32 140.6 87 83.9
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 1.7e-31 139.0 87 82.8
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 4.3e-30 134.4 84 83.3
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 1.2e-29 132.9 93 82.8
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 2.9e-26 121.7 88 77.3
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 4.9e-26 120.9 90 71.1
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 2.4e-25 118.6 64 98.4
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 2.1e-24 115.5 64 96.9
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 2.1e-24 115.5 64 96.9
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 3.5e-24 114.8 90 68.9
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 1.3e-23 112.8 90 65.6
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 1.3e-23 112.8 90 66.7
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 3.0e-23 111.7 90 65.6
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 5.1e-23 110.9 60 95.0
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 8.6e-23 110.2 90 61.1
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 1.1e-22 109.8 85 65.9
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 1.9e-22 109.0 90 64.4
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 1.9e-22 109.0 90 63.3
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 3.3e-22 108.2 90 62.2
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 3.3e-22 108.2 90 62.2
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 3.3e-22 108.2 90 62.2
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 3.3e-22 108.2 88 63.6
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 3.3e-22 108.2 90 61.1
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 3.3e-22 108.2 90 64.4
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 5.6e-22 107.5 88 65.9
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 5.6e-22 107.5 88 65.9
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 5.6e-22 107.5 88 65.9
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 5.6e-22 107.5 90 60.0
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 5.6e-22 107.5 89 62.9
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 7.3e-22 107.1 86 62.8
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 9.5e-22 106.7 90 63.3
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.2e-21 106.3 90 62.2
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 1.2e-21 106.3 90 62.2
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 1.6e-21 105.9 90 62.2
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 1.6e-21 105.9 90 61.1
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 1.6e-21 105.9 90 61.1
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 2.1e-21 105.5 87 63.2
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 2.1e-21 105.5 88 64.8
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 2.1e-21 105.5 90 62.2
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.1e-21 105.5 90 62.2
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.1e-21 105.5 90 62.2
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.1e-21 105.5 90 62.2
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.1e-21 105.5 90 62.2
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.1e-21 105.5 90 62.2
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 2.1e-21 105.5 90 63.3
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 2.8e-21 105.1 86 65.1
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 2.8e-21 105.1 86 65.1
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.6e-21 104.8 90 62.2
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 3.6e-21 104.8 90 63.3
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 3.6e-21 104.8 89 61.8
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 4.7e-21 104.4 90 58.9
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 4.7e-21 104.4 90 61.1
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 4.7e-21 104.4 90 60.0
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 6.2e-21 104.0 88 63.6
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 6.2e-21 104.0 90 60.0
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 8.1e-21 103.6 90 60.0
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 8.1e-21 103.6 90 60.0
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 8.1e-21 103.6 90 60.0
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 8.1e-21 103.6 90 61.1
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 1.1e-20 103.2 90 58.9
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 1.1e-20 103.2 90 60.0
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.4e-20 102.8 90 60.0
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 1.4e-20 102.8 90 61.1
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 1.8e-20 102.4 88 61.4
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 4.0e-20 101.3 89 59.6
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 5.2e-20 100.9 90 60.0
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 6.8e-20 100.5 90 61.1
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 6.8e-20 100.5 90 58.9
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 6.8e-20 100.5 83 61.4
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 6.8e-20 100.5 85 58.8
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 8.9e-20 100.1 83 61.4
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 8.9e-20 100.1 90 56.7
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.2e-19 99.8 90 60.0
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 1.2e-19 99.8 90 55.6
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 1.5e-19 99.4 89 55.1
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 2.0e-19 99.0 85 58.8
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 2.6e-19 98.6 87 58.6
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 2.6e-19 98.6 84 59.5
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 3.4e-19 98.2 90 61.1
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 3.4e-19 98.2 90 58.9
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 4.4e-19 97.8 90 60.0
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 5.8e-19 97.4 85 57.6
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 5.8e-19 97.4 90 55.6
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 5.8e-19 97.4 87 58.6
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 7.6e-19 97.1 90 58.9
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 7.6e-19 97.1 90 55.6
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 7.6e-19 97.1 83 60.2
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 9.9e-19 96.7 90 57.8
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 9.9e-19 96.7 90 57.8
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 9.9e-19 96.7 87 58.6
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 9.9e-19 96.7 88 54.5
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 1.3e-18 96.3 90 58.9
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 1.7e-18 95.9 90 56.7
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 2.2e-18 95.5 85 55.3
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 2.2e-18 95.5 87 58.6
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 3.8e-18 94.7 89 57.3
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 6.4e-18 94.0 86 53.5
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 8.4e-18 93.6 79 60.8
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 8.4e-18 93.6 84 58.3
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 1.1e-17 93.2 68 76.5
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 1.4e-17 92.8 85 57.6
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 1.9e-17 92.4 85 55.3
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 1.9e-17 92.4 79 62.0
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 3.2e-17 91.7 85 56.5
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 4.2e-17 91.3 90 57.8
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 7.1e-17 90.5 85 57.6
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 9.2e-17 90.1 84 56.0
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 1.6e-16 89.4 84 52.4
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 2.1e-16 89.0 85 52.9
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 2.1e-16 89.0 80 57.5
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 4.6e-16 87.8 84 54.8
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 4.6e-16 87.8 79 57.0
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 7.8e-16 87.0 86 53.5
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 2.3e-15 85.5 68 63.2
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 3.0e-15 85.1 79 55.7
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 6.6e-15 84.0 55 74.5
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 1.1e-14 83.2 61 67.2
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 1.1e-14 83.2 65 67.7
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 1.5e-14 82.8 85 49.4
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 7.3e-14 80.5 90 46.7
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 9.6e-14 80.1 85 51.8
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 9.6e-14 80.1 85 48.2
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 3.6e-13 78.2 88 43.2
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 1.4e-12 76.3 88 43.2
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 3.1e-12 75.1 54 66.7
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 4.0e-12 74.7 77 57.1
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 5.3e-12 74.3 85 47.1
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 9.0e-12 73.6 86 50.0
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 1.3e-10 69.7 85 47.1
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 6.0e-08 60.8 79 45.6
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 6.6e-07 57.4 44 68.2
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 6.6e-07 57.4 68 42.6


User provided reference genes

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