Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 6.3e-80 300.8 164 100.0
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 3.5e-62 241.9 158 87.3
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 8.0e-59 230.7 158 81.0
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 1.8e-58 229.6 159 83.6
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 1.8e-58 229.6 159 83.6
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 3.0e-58 228.8 159 83.6
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 3.0e-58 228.8 159 83.6
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 3.0e-58 228.8 158 81.6
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 5.2e-58 228.0 159 83.0
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 1.4e-55 219.9 159 78.0
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 1.8e-55 219.5 158 77.8
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 3.5e-54 215.3 158 76.6
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 1.1e-52 210.3 158 74.7
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 1.9e-52 209.5 143 85.3
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 7.3e-44 181.0 161 68.3
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 7.3e-36 154.5 158 57.6
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 1.4e-34 150.2 170 52.4
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 4.0e-34 148.7 158 57.6
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 8.9e-34 147.5 158 57.0
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 2.0e-33 146.4 158 55.7
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 1.3e-32 143.7 170 49.4
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 2.9e-32 142.5 157 53.5
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 8.3e-32 141.0 157 54.8
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 1.1e-31 140.6 158 53.8
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 5.4e-31 138.3 160 53.8
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 7.0e-31 137.9 158 53.8
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 7.0e-31 137.9 141 57.4
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 9.2e-31 137.5 158 53.2
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 1.2e-30 137.1 150 56.0
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 2.1e-30 136.3 158 55.7
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 2.7e-30 136.0 134 70.9
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 2.7e-30 136.0 158 51.3
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 3.5e-30 135.6 159 52.8
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 7.8e-30 134.4 154 51.3
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 7.8e-30 134.4 158 53.8
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 1.3e-29 133.7 160 53.8
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 3.9e-29 132.1 162 48.8
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 3.9e-29 132.1 158 54.4
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 5.0e-29 131.7 157 54.8
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 6.6e-29 131.3 158 50.0
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 8.6e-29 131.0 158 53.8
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 1.5e-28 130.2 144 54.2
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 2.5e-28 129.4 160 53.1
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 5.6e-28 128.3 158 50.6
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 5.6e-28 128.3 158 50.0
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 7.3e-28 127.9 158 51.9
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 9.5e-28 127.5 158 51.9
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 9.5e-28 127.5 158 51.9
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 1.2e-27 127.1 157 49.7
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 1.2e-27 127.1 142 51.4
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 1.6e-27 126.7 159 49.1
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 2.1e-27 126.3 158 51.9
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 2.1e-27 126.3 158 48.1
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 2.1e-27 126.3 158 48.1
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 2.8e-27 125.9 158 51.3
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 2.8e-27 125.9 134 53.7
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 3.6e-27 125.6 163 49.1
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 4.7e-27 125.2 158 50.6
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 4.7e-27 125.2 158 51.3
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 6.2e-27 124.8 155 49.0
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 8.1e-27 124.4 159 48.4
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 1.1e-26 124.0 157 51.0
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 1.8e-26 123.2 145 52.4
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 1.8e-26 123.2 145 52.4
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 3.1e-26 122.5 158 51.9
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 3.1e-26 122.5 158 50.6
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 4.0e-26 122.1 158 50.0
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 4.0e-26 122.1 158 50.0
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 4.0e-26 122.1 157 52.2
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 4.0e-26 122.1 158 50.0
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 6.8e-26 121.3 158 47.5
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 6.8e-26 121.3 158 50.0
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 8.9e-26 120.9 158 49.4
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 1.5e-25 120.2 153 51.6
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.0e-25 119.8 155 48.4
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.0e-25 119.8 155 48.4
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 3.4e-25 119.0 155 48.4
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.4e-25 119.0 155 48.4
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.4e-25 119.0 155 48.4
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 4.4e-25 118.6 118 58.5
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 5.8e-25 118.2 84 78.6
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 5.8e-25 118.2 157 51.0
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 7.5e-25 117.9 155 47.7
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 7.5e-25 117.9 155 47.7
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.3e-24 117.1 155 47.7
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 6.4e-24 114.8 154 45.5
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 8.3e-24 114.4 158 45.6
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 8.3e-24 114.4 117 53.8
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 4.1e-23 112.1 149 45.0
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 4.1e-23 112.1 141 48.9
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 4.1e-23 112.1 141 48.9
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 4.1e-23 112.1 158 46.2
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 7.1e-23 111.3 141 49.6
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 7.1e-23 111.3 158 48.7
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 9.2e-23 110.9 158 44.3
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 4.6e-22 108.6 158 48.7
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 7.8e-22 107.8 149 49.0
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 1.0e-21 107.5 141 48.9
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 1.7e-21 106.7 157 43.9
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 6.6e-21 104.8 157 43.9
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 1.5e-20 103.6 162 45.7
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 1.9e-20 103.2 109 62.4
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 1.9e-20 103.2 109 62.4
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 1.9e-20 103.2 109 62.4
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 4.3e-20 102.1 154 45.5
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 5.6e-20 101.7 156 53.2
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 1.6e-19 100.1 162 44.4
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 2.1e-19 99.8 156 53.2
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 3.6e-19 99.0 156 53.8
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 3.6e-19 99.0 156 53.8
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 1.1e-18 97.4 164 40.2
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.8e-18 96.7 157 42.7
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 2.4e-18 96.3 158 44.9
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 3.1e-18 95.9 118 50.0
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 1.2e-14 84.0 137 46.7
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 2.3e-13 79.7 78 59.0
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 5.1e-13 78.6 159 39.0
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 5.1e-13 78.6 141 39.0
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 1.1e-12 77.4 131 41.2
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 1.5e-12 77.0 156 35.9
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 1.6e-11 73.6 151 45.0
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 8.1e-11 71.2 99 44.4
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 1.4e-10 70.5 54 72.2
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 2.4e-10 69.7 166 32.5
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 7.6e-09 64.7 62 59.7
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 1.3e-08 63.9 151 36.4
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 2.9e-08 62.8 158 33.5
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 1.1e-07 60.8 148 34.5
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 1.1e-07 60.8 141 31.9
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 1.9e-07 60.1 95 41.1
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 5.4e-07 58.5 152 37.5
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 5.4e-07 58.5 152 37.5
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 5.4e-07 58.5 152 37.5
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 5.4e-07 58.5 148 33.8
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 2.7e-06 56.2 41 65.9
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 3.5e-06 55.8 42 61.9


User provided reference genes

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