Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 0.0e+00 1164.8 620 100.0
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 2.2e-279 965.3 575 92.0
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 2.9e-279 964.9 576 91.5
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 2.9e-279 964.9 577 91.3
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 8.5e-279 963.4 575 91.7
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 2.5e-278 961.8 575 91.5
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 2.1e-277 958.7 587 88.4
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 7.8e-256 887.1 587 81.4
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 4.3e-254 881.3 591 80.9
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 5.6e-254 880.9 581 81.4
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 1.9e-246 855.9 591 79.2
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 1.6e-221 773.1 587 72.9
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 1.7e-218 763.1 582 74.6
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 1.2e-179 634.0 597 60.1
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 1.1e-177 627.5 595 60.3
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 1.2e-176 624.0 586 65.2
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 2.1e-176 623.2 593 60.5
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 7.9e-176 621.3 597 59.8
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 2.3e-175 619.8 595 58.8
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 1.3e-173 614.0 594 58.6
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 2.8e-173 612.8 591 58.2
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 1.1e-172 610.9 601 59.6
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 2.4e-172 609.8 584 59.1
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 2.4e-172 609.8 589 56.9
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 9.1e-172 607.8 584 58.9
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 1.5e-171 607.1 585 59.7
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 4.5e-171 605.5 585 58.6
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.3e-170 604.0 584 58.2
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 1.1e-169 600.9 591 59.1
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 1.9e-169 600.1 600 58.3
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 2.5e-169 599.7 590 56.3
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 5.5e-169 598.6 601 58.1
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 5.5e-169 598.6 601 58.1
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 2.1e-168 596.7 597 58.0
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 1.0e-167 594.3 595 55.6
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 6.7e-167 591.7 597 57.3
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 3.3e-166 589.3 616 56.3
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 7.5e-166 588.2 600 57.2
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 2.2e-165 586.6 567 59.3
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 4.8e-165 585.5 612 56.0
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 4.8e-165 585.5 590 56.6
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 8.2e-165 584.7 594 56.1
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 1.6e-163 580.5 593 57.2
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 2.7e-163 579.7 604 55.3
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.9e-162 576.2 626 54.6
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.9e-162 576.2 626 54.6
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 6.5e-162 575.1 602 55.6
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 8.5e-162 574.7 614 54.9
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 2.5e-161 573.2 600 55.3
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 2.5e-161 573.2 598 57.5
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 4.2e-161 572.4 614 54.7
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 7.2e-161 571.6 614 54.9
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 9.4e-161 571.2 602 54.7
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 1.2e-160 570.9 585 55.9
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.6e-160 570.5 614 54.6
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 1.6e-160 570.5 585 55.0
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.6e-160 569.3 614 54.7
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 3.0e-159 566.2 612 54.6
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 5.2e-159 565.5 586 54.8
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 1.2e-158 564.3 593 54.8
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 1.2e-158 564.3 610 55.1
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 2.0e-158 563.5 550 59.1
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 3.4e-158 562.8 610 54.3
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 7.5e-158 561.6 603 53.7
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 7.5e-158 561.6 614 54.1
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 4.1e-156 555.8 601 54.6
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 5.0e-154 548.9 591 54.0
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 7.5e-150 535.0 589 53.1
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 1.3e-149 534.3 594 52.5
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 6.3e-149 531.9 585 58.3
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 1.1e-148 531.2 590 52.4
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 2.4e-148 530.0 612 52.3
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 3.1e-148 529.6 581 53.5
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 2.7e-147 526.6 594 51.7
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 5.9e-147 525.4 610 51.0
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 7.7e-147 525.0 591 51.8
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 2.9e-146 523.1 578 57.4
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 5.6e-145 518.8 600 52.2
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 1.2e-144 517.7 603 51.2
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 1.6e-144 517.3 602 49.3
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 1.0e-143 514.6 580 57.9
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 1.8e-143 513.8 578 57.1
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 3.0e-143 513.1 579 57.3
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 4.0e-143 512.7 599 50.8
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 1.3e-141 507.7 605 49.4
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 1.3e-141 507.7 605 49.4
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 6.4e-141 505.4 604 50.3
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 4.1e-140 502.7 605 50.1
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 5.0e-138 495.7 515 56.5
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 5.6e-137 492.3 588 54.9
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 2.8e-136 490.0 594 50.2
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 3.6e-136 489.6 605 49.3
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 8.0e-136 488.4 600 48.5
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 7.5e-134 481.9 581 51.5
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 1.4e-132 477.6 584 49.0
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 1.4e-132 477.6 591 48.9
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 1.9e-132 477.2 580 48.6
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 3.2e-132 476.5 598 47.3
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 2.0e-131 473.8 559 50.4
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 1.0e-130 471.5 597 48.1
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 2.3e-130 470.3 584 53.1
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 3.0e-130 469.9 596 47.0
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 1.9e-129 467.2 584 46.7
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 6.2e-128 462.2 586 52.6
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 1.9e-124 450.7 607 45.3
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 5.4e-124 449.1 576 47.0
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 6.0e-123 445.7 461 57.0
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.7e-122 444.1 461 56.8
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 4.7e-120 436.0 613 45.4
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 4.4e-118 429.5 416 58.9
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 9.9e-118 428.3 586 46.8
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 9.2e-116 421.8 632 41.8
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 8.6e-114 415.2 627 41.8
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 1.5e-113 414.5 427 57.4
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 1.9e-113 414.1 630 41.1
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 3.4e-110 403.3 588 43.2
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 1.3e-109 401.4 622 42.8
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 1.0e-106 391.7 558 50.9
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 3.3e-105 386.7 459 50.5
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 1.9e-100 370.9 407 53.1
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 3.4e-94 350.1 338 60.1
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 1.3e-90 338.2 584 40.8
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 3.1e-87 327.0 335 54.6
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 6.7e-82 309.3 375 50.1
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 7.6e-78 295.8 197 87.3
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 1.0e-77 295.4 493 45.4
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 8.2e-72 275.8 616 33.0
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 1.3e-69 268.5 343 48.1
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 6.1e-67 259.6 558 35.7
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 2.0e-62 244.6 562 34.3
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 3.4e-62 243.8 158 87.3
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.8e-56 224.2 559 33.8
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.1e-55 220.7 559 33.1
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 7.2e-52 209.5 366 38.0
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 4.7e-51 206.8 136 83.1
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.5e-44 185.3 240 47.5
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 3.6e-43 180.6 221 54.8
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 8.0e-43 179.5 361 35.2
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 1.0e-42 179.1 128 75.8
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 3.0e-42 177.6 381 37.3
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 3.0e-42 177.6 221 54.3
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 3.0e-42 177.6 100 95.0
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 3.0e-42 177.6 221 54.3
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 1.7e-40 171.8 310 40.6
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 5.9e-38 163.3 634 26.3
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 5.9e-38 163.3 170 53.5
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 1.5e-36 158.7 84 98.8
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 1.0e-34 152.5 84 96.4
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 5.7e-33 146.7 103 82.5
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 9.8e-33 146.0 124 64.5
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 2.2e-32 144.8 118 62.7
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 2.8e-32 144.4 117 63.2
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 1.0e-29 136.0 114 65.8
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 1.3e-21 109.0 87 63.2
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 3.9e-21 107.5 87 62.1
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 6.6e-21 106.7 467 24.6
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 1.8e-18 98.6 95 57.9
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 5.2e-18 97.1 84 58.3
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 1.2e-17 95.9 153 40.5
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 1.2e-17 95.9 71 66.2
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 2.6e-17 94.7 120 51.7
Actinidia11446 Actinidia chinensis HOM05D001997 ORTHO05D004620 4.4e-17 94.0 179 38.0
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 6.4e-16 90.1 55 85.5
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 5.4e-15 87.0 82 63.4
BcaC01g05247 Brassica carinata HOM05D001997 ORTHO05D004620 1.9e-12 78.6 71 62.0
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 3.3e-12 77.8 83 49.4
BcaB01g03396 Brassica carinata HOM05D001623 ORTHO05D001473 5.6e-12 77.0 56 71.4
BcaC01g05246 Brassica carinata HOM05D001997 ORTHO05D004620 8.1e-11 73.2 86 51.2
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.1e-10 72.8 65 56.9
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 5.8e-09 67.0 51 66.7
BolC5t33660H Brassica oleracea HOM05D001997 ORTHO05D004620 9.8e-09 66.2 381 29.1
FAN10G4060 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.1e-06 58.5 262 24.4


User provided reference genes

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