Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29288 Brassica carinata HOM05D007575 ORTHO05D009611 1.3e-159 566.6 353 100.0
Thhalv10001393m.g Eutrema salsugineum HOM05D007575 ORTHO05D009611 4.7e-40 169.5 129 67.4
AL4G41870 Arabidopsis lyrata HOM05D007575 ORTHO05D009611 8.0e-40 168.7 128 66.4
AT2G43210 Arabidopsis thaliana HOM05D007575 ORTHO05D009611 2.3e-39 167.2 128 66.4
Sp4g25330 Schrenkiella parvula HOM05D007575 ORTHO05D009611 1.2e-38 164.9 128 65.6
Carub.0004s2568 Capsella rubella HOM05D007575 ORTHO05D009611 4.4e-38 162.9 126 65.1
Aa31LG1G25020 Aethionema arabicum HOM05D007575 ORTHO05D009611 7.5e-38 162.2 129 65.1
BraA04t18714Z Brassica rapa HOM05D001811 ORTHO05D001738 5.4e-36 156.0 126 65.9
Gorai.011G145500 Gossypium raimondii HOM05D007575 ORTHO05D009611 2.3e-34 150.6 129 58.9
C04p70190 Brassica napus HOM05D007575 ORTHO05D009611 3.0e-34 150.2 164 53.0
CiPaw.01G103900 Carya illinoinensis HOM05D007575 ORTHO05D009611 8.6e-34 148.7 128 60.2
Gohir.D10G131800 Gossypium hirsutum HOM05D007575 ORTHO05D009611 8.6e-34 148.7 129 58.1
Sed0001943 Sechium edule HOM05D007575 ORTHO05D009611 4.3e-33 146.4 128 56.2
Gohir.A10G134800 Gossypium hirsutum HOM05D007575 ORTHO05D009611 7.3e-33 145.6 129 56.6
THA.LOC104803562 Tarenaya hassleriana HOM05D007575 ORTHO05D009611 7.3e-33 145.6 147 54.4
CsaV3_6G003720 Cucumis sativus L. HOM05D007575 ORTHO05D009611 9.5e-33 145.2 128 56.2
MD04G1038600 Malus domestica HOM05D007575 ORTHO05D009611 9.5e-33 145.2 128 55.5
ClCG08G004240 Citrullus lanatus HOM05D007575 ORTHO05D009611 1.2e-32 144.8 128 56.2
QL10p045159 Quercus lobata HOM05D007575 ORTHO05D009611 1.2e-32 144.8 127 55.9
Prupe.1G189300 Prunus persica HOM05D007575 ORTHO05D009611 1.6e-32 144.4 127 54.3
A04p32490 Brassica napus HOM05D007575 ORTHO05D009611 4.7e-32 142.9 152 55.3
MELO3C011621.2 Cucumis melo HOM05D007575 ORTHO05D009611 4.7e-32 142.9 128 55.5
Gohir.A05G326900 Gossypium hirsutum HOM05D007575 ORTHO05D009611 4.7e-32 142.9 128 59.4
FAN17G1632 Fragaria x ananassa HOM05D007575 ORTHO05D009611 1.4e-31 141.4 127 55.9
CANSAT78G0404 Cannabis sativa HOM05D007575 ORTHO05D009611 1.8e-31 141.0 138 50.7
Ciclev10019508m.g Citrus clementina HOM05D007575 ORTHO05D009611 2.3e-31 140.6 127 55.1
FvH4_4g11270 Fragaria vesca HOM05D007575 ORTHO05D009611 4.0e-31 139.8 128 53.9
Gohir.D05G326300 Gossypium hirsutum HOM05D007575 ORTHO05D009611 5.2e-31 139.4 128 57.8
Gorai.009G350900 Gossypium raimondii HOM05D007575 ORTHO05D009611 5.2e-31 139.4 128 57.8
Haze_00711 Corylus avellana HOM05D007575 ORTHO05D009611 6.8e-31 139.0 128 56.2
Cfa015783 Carpinus fangiana HOM05D007575 ORTHO05D009611 8.9e-31 138.7 128 56.2
FAN07G0850 Fragaria x ananassa HOM05D007575 ORTHO05D009611 8.9e-31 138.7 127 54.3
Actinidia39859 Actinidia chinensis HOM05D007575 ORTHO05D009611 2.0e-30 137.5 127 55.9
HanXRQChr02g0057801 Helianthus annuus HOM05D007575 ORTHO05D009611 2.6e-30 137.1 128 52.3
Oeu050351.1 Olea europaea HOM05D007575 ORTHO05D009611 2.6e-30 137.1 128 53.9
CSS0031716 Camellia sinensis var. sinensis HOM05D007575 ORTHO05D009611 4.4e-30 136.3 127 54.3
Thecc.04G183800 Theobroma cacao HOM05D007575 ORTHO05D009611 4.4e-30 136.3 128 55.5
Lj6A61T39 Lonicera japonica HOM05D007575 ORTHO05D009611 7.5e-30 135.6 127 54.3
Duzib151G0056 Durio zibethinus HOM05D007575 ORTHO05D009611 9.8e-30 135.2 128 57.0
Eucgr.A00245 Eucalyptus grandis HOM05D007575 ORTHO05D009611 9.8e-30 135.2 128 53.9
RcHm_v2.0_Chr4g0407361 Rosa chinensis HOM05D007575 ORTHO05D009611 1.3e-29 134.8 128 51.6
SGA_v2.0_scaffold406G51053 Striga asiatica HOM05D007575 ORTHO05D009611 4.9e-29 132.9 127 54.3
GSVIVG01013567001 Vitis vinifera HOM05D007575 ORTHO05D009611 8.3e-29 132.1 127 52.0
Lsat_1_v5_gn_6_54841 Lactuca sativa HOM05D007575 ORTHO05D009611 1.1e-28 131.7 128 51.6
TAR633G2419 Trochodendron aralioides HOM05D007575 ORTHO05D009611 1.1e-28 131.7 139 51.1
Rhsim09G0032600 Rhododendron simsii HOM05D007575 ORTHO05D009611 1.9e-28 131.0 127 53.5
Cc03_g13380 Coffea canephora HOM05D007575 ORTHO05D009611 2.4e-28 130.6 128 52.3
PGR083G2249 Punica granatum HOM05D007575 ORTHO05D009611 2.4e-28 130.6 128 52.3
Potri.007G123800 Populus trichocarpa HOM05D007575 ORTHO05D009611 7.0e-28 129.0 127 51.2
Sabra07G0100200 Salix brachista HOM05D007575 ORTHO05D009611 7.0e-28 129.0 127 52.0
ECA233G3130 Erigeron canadensis HOM05D007575 ORTHO05D009611 9.2e-28 128.6 128 50.0
Manes.11G115700 Manihot esculenta HOM05D007575 ORTHO05D009611 2.0e-27 127.5 145 47.6
MSTRG.24588 Avicennia marina HOM05D007575 ORTHO05D009611 2.7e-27 127.1 128 51.6
Migut.N00470 Erythranthe guttata HOM05D007575 ORTHO05D009611 4.6e-27 126.3 128 50.8
Nn1g09745 Nelumbo nucifera HOM05D007575 ORTHO05D009611 1.3e-26 124.8 127 50.4
Potri.017G036600 Populus trichocarpa HOM05D007575 ORTHO05D009611 1.7e-26 124.4 127 49.6
unitig_8.g3630 Utricularia gibba HOM05D007575 ORTHO05D009611 8.6e-26 122.1 127 48.8
CAN.G710.64 Capsicum annuum HOM05D007575 ORTHO05D009611 1.5e-25 121.3 128 48.4
SalBow6G5467 Salvia bowleyana HOM05D007575 ORTHO05D009611 1.5e-25 121.3 127 48.8
Actinidia11312 Actinidia chinensis HOM05D007575 ORTHO05D009611 2.5e-25 120.6 130 52.3
Sopen09g036470 Solanum pennellii HOM05D007575 ORTHO05D009611 9.5e-25 118.6 126 47.6
DCAR_027534 Daucus carota HOM05D007575 ORTHO05D009611 2.1e-24 117.5 141 45.4
HPP92_002869 Vanilla planifolia HOM05D007575 ORTHO05D009611 8.1e-24 115.5 125 44.0
Lj6A70T54 Lonicera japonica HOM05D007575 ORTHO05D009611 1.1e-23 115.2 166 41.6
Peaxi162Scf00286g00233 Petunia axillaris HOM05D007575 ORTHO05D009611 1.8e-23 114.4 173 40.5
CDE09G0236 Ceratophyllum demersum HOM05D007575 ORTHO05D009611 1.2e-22 111.7 127 46.5
vmacro00586 Vaccinium macrocarpon HOM05D007575 ORTHO05D009611 1.2e-22 111.7 155 41.9
PSO210G6745 Papaver somniferum HOM05D007575 ORTHO05D009611 4.9e-21 106.3 129 45.7
HPP92_002813 Vanilla planifolia HOM05D007575 ORTHO05D009611 4.9e-21 106.3 132 40.9
PSO832G0541 Papaver somniferum HOM05D007575 ORTHO05D009611 4.1e-20 103.2 129 45.0
FAN22G0659 Fragaria x ananassa HOM05D007575 ORTHO05D009611 5.4e-20 102.8 140 44.3
Os11g0293900 Oryza sativa ssp. japonica HOM05D007575 ORTHO05D009611 5.4e-20 102.8 127 40.2
ATR0743G244 Amborella trichopoda HOM05D007575 ORTHO05D009611 1.2e-19 101.7 127 41.7
SEGI_13760 Sequoiadendron giganteum HOM05D007575 ORTHO05D009611 7.3e-17 92.4 143 37.1
Sabra17G0024000 Salix brachista HOM05D007575 ORTHO05D009611 4.7e-16 89.7 117 41.9
Atru.chr3.1619 Acer truncatum HOM05D007575 ORTHO05D009611 3.1e-15 87.0 107 45.8
Mapoly0164s0007 Marchantia polymorpha HOM05D007575 ORTHO05D009611 9.9e-14 82.0 110 39.1
BcaNung07370 Brassica carinata HOM05D007575 ORTHO05D009611 6.4e-13 79.3 59 64.4
MBI08_g10298_MAGBIO Magnolia biondii HOM05D007575 ORTHO05D009611 1.4e-12 78.2 185 33.0
CARHR138270 Cardamine hirsuta HOM05D007575 ORTHO05D009611 1.9e-12 77.8 51 68.6
Pp3c20_2320 Physcomitrium patens HOM05D007575 ORTHO05D009611 6.0e-11 72.8 111 36.0
Nitab4.5_0001049g0060 Nicotiana tabacum HOM05D007575 ORTHO05D009611 9.6e-09 65.5 51 52.9
Nitab4.5_0004962g0010 Nicotiana tabacum HOM05D007575 ORTHO05D009611 9.6e-09 65.5 51 52.9
Solyc09g098550.4 Solanum lycopersicum HOM05D007575 ORTHO05D009611 1.1e-07 62.0 55 43.6
PGSC0003DMG400021612 Solanum tuberosum HOM05D007575 ORTHO05D009611 1.1e-07 62.0 60 53.3
AagrBONN_evm.TU.Sc2ySwM_344.3290 Anthoceros agrestis HOM05D007575 ORTHO05D009611 9.0e-07 58.9 114 31.6
COL.COLO4_24385 Corchorus olitorius HOM05D001792 ORTHO05D001821 1.5e-06 58.2 47 63.8


User provided reference genes

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