Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29280 Brassica carinata HOM05D000036 ORTHO05D000095 8.4e-76 287.0 146 100.0
BcaC02g07209 Brassica carinata HOM05D000036 ORTHO05D000095 4.9e-44 181.4 91 98.9
C04p70050 Brassica napus HOM05D000036 ORTHO05D000095 4.9e-44 181.4 91 98.9
BolC4t28505H Brassica oleracea HOM05D000036 ORTHO05D000095 4.9e-44 181.4 91 98.9
BNapus_Darmor_BZH_scaffold_64p00100 Brassica napus HOM05D000036 ORTHO05D000095 5.5e-43 177.9 91 95.6
BraA04t18706Z Brassica rapa HOM05D000036 ORTHO05D000095 5.5e-43 177.9 91 95.6
BcaB06g29283 Brassica carinata HOM05D000036 ORTHO05D000095 4.1e-38 161.8 91 86.8
BcaNung07336 Brassica carinata HOM05D000036 ORTHO05D000095 7.7e-37 157.5 97 80.4
BolC4t22050H Brassica oleracea HOM05D000036 ORTHO05D000095 7.7e-37 157.5 97 80.4
C04p04110 Brassica napus HOM05D000036 ORTHO05D000095 1.3e-36 156.8 97 80.4
AT2G43050 Arabidopsis thaliana HOM05D000036 ORTHO05D000095 1.1e-35 153.7 91 81.3
AL4G41690 Arabidopsis lyrata HOM05D000036 ORTHO05D000095 1.4e-35 153.3 91 80.2
Sp4g25180 Schrenkiella parvula HOM05D000036 ORTHO05D000095 1.4e-35 153.3 97 78.4
A05p03530 Brassica napus HOM05D000036 ORTHO05D000095 1.9e-35 152.9 98 77.6
BraA05t19339Z Brassica rapa HOM05D000036 ORTHO05D000095 1.9e-35 152.9 98 77.6
Carub.0004s2553 Capsella rubella HOM05D000036 ORTHO05D000095 2.5e-35 152.5 90 82.2
Thhalv10016522m.g Eutrema salsugineum HOM05D000036 ORTHO05D000095 3.6e-34 148.7 93 80.6
THA.LOC104822583 Tarenaya hassleriana HOM05D000036 ORTHO05D000095 6.1e-26 121.3 94 64.9
CARHR138120 Cardamine hirsuta HOM05D000036 ORTHO05D000095 1.0e-25 120.6 92 66.3
THA.LOC104802289 Tarenaya hassleriana HOM05D000036 ORTHO05D000095 1.0e-25 120.6 95 64.2
CARHR169420 Cardamine hirsuta HOM05D000036 ORTHO05D000095 1.8e-25 119.8 95 65.3
Thhalv10005885m.g Eutrema salsugineum HOM05D000036 ORTHO05D000095 1.5e-24 116.7 95 62.1
Sp5g03980 Schrenkiella parvula HOM05D000036 ORTHO05D000095 9.7e-24 114.0 126 50.8
Carub.0005s2577 Capsella rubella HOM05D000036 ORTHO05D000095 6.3e-23 111.3 95 61.1
BcaC07g40305 Brassica carinata HOM05D000036 ORTHO05D000095 8.2e-23 110.9 95 60.0
C08p34210 Brassica napus HOM05D000036 ORTHO05D000095 8.2e-23 110.9 95 60.0
BolC8t51018H Brassica oleracea HOM05D000036 ORTHO05D000095 8.2e-23 110.9 95 60.0
AT3G59010 Arabidopsis thaliana HOM05D000036 ORTHO05D000095 1.1e-22 110.5 95 60.0
BcaC07g40234 Brassica carinata HOM05D000036 ORTHO05D000095 1.1e-22 110.5 94 60.6
A09p51410 Brassica napus HOM05D000036 ORTHO05D000095 1.4e-22 110.2 95 58.9
BraA09t40582Z Brassica rapa HOM05D000036 ORTHO05D000095 1.4e-22 110.2 95 58.9
AL5G40890 Arabidopsis lyrata HOM05D000036 ORTHO05D000095 1.5e-21 106.7 95 58.9
BcaC02g10034 Brassica carinata HOM05D000036 ORTHO05D000095 2.9e-20 102.4 92 57.6
C04p33660 Brassica napus HOM05D000036 ORTHO05D000095 2.9e-20 102.4 92 57.6
BolC4t24935H Brassica oleracea HOM05D000036 ORTHO05D000095 2.9e-20 102.4 92 57.6
A04p02310 Brassica napus HOM05D000036 ORTHO05D000095 6.5e-20 101.3 92 55.4
BraA04t15961Z Brassica rapa HOM05D000036 ORTHO05D000095 6.5e-20 101.3 92 55.4
Aa31LG1G24820 Aethionema arabicum HOM05D000036 ORTHO05D000095 8.5e-20 100.9 116 48.3
BcaB02g08233 Brassica carinata HOM05D000036 ORTHO05D000095 3.2e-19 99.0 92 55.4
Aa31LG10G13490 Aethionema arabicum HOM05D000036 ORTHO05D000095 9.4e-19 97.4 100 53.0
BcaB06g29279 Brassica carinata HOM05D000407 ORTHO05D001717 3.8e-12 75.5 36 100.0
RcHm_v2.0_Chr4g0409791 Rosa chinensis HOM05D000036 ORTHO05D000095 5.0e-12 75.1 101 45.5
FAN12G1791 Fragaria x ananassa HOM05D000036 ORTHO05D000095 1.5e-11 73.6 103 41.7
FvH4_4g12140 Fragaria vesca HOM05D000036 ORTHO05D000095 2.5e-11 72.8 103 41.7
FAN07G2770 Fragaria x ananassa HOM05D000036 ORTHO05D000095 2.5e-11 72.8 100 44.0
FAN12G0933 Fragaria x ananassa HOM05D000036 ORTHO05D000095 2.5e-11 72.8 103 41.7
FAN22G1673 Fragaria x ananassa HOM05D000036 ORTHO05D000095 2.5e-11 72.8 103 43.7
FAN22G1932 Fragaria x ananassa HOM05D000036 ORTHO05D000095 2.5e-11 72.8 103 43.7
Haze_11078 Corylus avellana HOM05D000036 ORTHO05D000095 4.2e-11 72.0 91 40.7
Dinv44236 Davidia involucrata HOM05D000036 ORTHO05D000095 2.7e-10 69.3 124 35.5
Atru.chr3.1802 Acer truncatum HOM05D000036 ORTHO05D000095 3.6e-10 68.9 94 43.6
MD04G1030100 Malus domestica HOM05D000036 ORTHO05D000095 4.7e-10 68.6 96 41.7
Cfa008550 Carpinus fangiana HOM05D000036 ORTHO05D000095 6.1e-10 68.2 97 39.2
Prupe.1G178400 Prunus persica HOM05D000036 ORTHO05D000095 1.4e-09 67.0 91 39.6
TAR383G0032 Trochodendron aralioides HOM05D000036 ORTHO05D000095 1.4e-09 67.0 117 35.9
TAR383G0065 Trochodendron aralioides HOM05D000036 ORTHO05D000095 1.4e-09 67.0 117 35.9
MD04G1029600 Malus domestica HOM05D000036 ORTHO05D000095 4.0e-09 65.5 96 40.6
TWI15G0690 Tripterygium wilfordii HOM05D000036 ORTHO05D000095 1.5e-08 63.5 84 45.2
COL.COLO4_10184 Corchorus olitorius HOM05D000036 ORTHO05D000095 2.0e-08 63.2 79 45.6
MBI13_g01698_MAGBIO Magnolia biondii HOM05D001342 ORTHO05D001286 4.4e-08 62.0 77 42.9
MD04G1028900 Malus domestica HOM05D000036 ORTHO05D000095 4.4e-08 62.0 88 38.6
CiPaw.05G250800 Carya illinoinensis HOM05D000036 ORTHO05D000095 5.7e-08 61.6 83 39.8
CiPaw.01G108200 Carya illinoinensis HOM05D000036 ORTHO05D000095 9.7e-08 60.8 91 38.5
HanXRQChr07g0206511 Helianthus annuus HOM05D000036 ORTHO05D000095 1.3e-07 60.5 77 40.3
Manes.04G053900 Manihot esculenta HOM05D000036 ORTHO05D000095 1.3e-07 60.5 141 35.5
CANSAT78G1914 Cannabis sativa HOM05D000036 ORTHO05D000095 2.2e-07 59.7 76 48.7
Nn8g38515 Nelumbo nucifera HOM05D000036 ORTHO05D000095 2.8e-07 59.3 80 42.5
CDE07G0782 Ceratophyllum demersum HOM05D000036 ORTHO05D000095 3.7e-07 58.9 98 36.7
Ciclev10019376m.g Citrus clementina HOM05D000036 ORTHO05D000095 1.1e-06 57.4 78 41.0
CiPaw.06G011100 Carya illinoinensis HOM05D000036 ORTHO05D000095 1.4e-06 57.0 134 33.6
MD01G1220700 Malus domestica HOM05D000036 ORTHO05D000095 1.4e-06 57.0 76 43.4
Glyma.04G236200 Glycine max HOM05D000036 ORTHO05D000095 1.8e-06 56.6 133 31.6
Sed0005649 Sechium edule HOM05D000036 ORTHO05D000095 1.8e-06 56.6 90 38.9
CiPaw.02G059700 Carya illinoinensis HOM05D000036 ORTHO05D000095 2.4e-06 56.2 85 40.0
Duzib084G0221 Durio zibethinus HOM05D000036 ORTHO05D000095 2.4e-06 56.2 106 37.7
Rhsim09G0205300 Rhododendron simsii HOM05D000036 ORTHO05D000095 2.4e-06 56.2 69 40.6
HPP92_005796 Vanilla planifolia HOM05D000036 ORTHO05D000095 2.4e-06 56.2 126 33.3
Oeu040725.1 Olea europaea HOM05D000036 ORTHO05D000095 4.1e-06 55.5 87 40.2
Sabra14G0112900 Salix brachista HOM05D000036 ORTHO05D000095 4.1e-06 55.5 58 48.3
Sabra14G0113000 Salix brachista HOM05D000036 ORTHO05D000095 4.1e-06 55.5 58 48.3
Sabra14G0113100 Salix brachista HOM05D000036 ORTHO05D000095 4.1e-06 55.5 58 48.3
SalBow2G0263 Salvia bowleyana HOM05D000036 ORTHO05D000095 4.1e-06 55.5 73 42.5
HPP92_002919 Vanilla planifolia HOM05D000036 ORTHO05D000095 4.1e-06 55.5 101 35.6
Actinidia06151 Actinidia chinensis HOM05D000036 ORTHO05D000095 7.0e-06 54.7 69 44.9
PSO135G0912 Papaver somniferum HOM05D000036 ORTHO05D000095 7.0e-06 54.7 67 38.8
PSO724G0131 Papaver somniferum HOM05D000036 ORTHO05D000095 7.0e-06 54.7 95 32.6
PSO724G1290 Papaver somniferum HOM05D000036 ORTHO05D000095 7.0e-06 54.7 95 32.6
FAN01G0714 Fragaria x ananassa HOM05D000036 ORTHO05D000095 9.1e-06 54.3 92 37.0
FAN06G1676 Fragaria x ananassa HOM05D000036 ORTHO05D000095 9.1e-06 54.3 92 37.0
FAN06G3242 Fragaria x ananassa HOM05D000036 ORTHO05D000095 9.1e-06 54.3 92 37.0
FAN10G0518 Fragaria x ananassa HOM05D000036 ORTHO05D000095 9.1e-06 54.3 92 37.0
FAN10G0954 Fragaria x ananassa HOM05D000036 ORTHO05D000095 9.1e-06 54.3 92 37.0
MD07G1289200 Malus domestica HOM05D000036 ORTHO05D000095 9.1e-06 54.3 76 39.5
MD16G1022000 Malus domestica HOM05D000036 ORTHO05D000095 9.1e-06 54.3 83 37.3
MD16G1022100 Malus domestica HOM05D000036 ORTHO05D000095 9.1e-06 54.3 83 37.3
Rhsim03G0208400 Rhododendron simsii HOM05D000036 ORTHO05D000095 9.1e-06 54.3 81 37.0
SGA_v2.0_scaffold10G05239 Striga asiatica HOM05D000036 ORTHO05D000095 9.1e-06 54.3 58 50.0


User provided reference genes

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