Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29274 Brassica carinata HOM05D006899 ORTHO05D008566 2.9e-81 305.4 187 100.0
BcaC02g07213 Brassica carinata HOM05D006899 ORTHO05D008566 7.9e-71 270.8 187 86.6
C04p70000 Brassica napus HOM05D006899 ORTHO05D008566 7.9e-71 270.8 187 86.6
BolC4t28500H Brassica oleracea HOM05D006899 ORTHO05D008566 7.9e-71 270.8 187 86.6
BNapus_Darmor_BZH_scaffold_64p00160 Brassica napus HOM05D006899 ORTHO05D008566 2.4e-67 259.2 187 89.8
BraA04t18701Z Brassica rapa HOM05D006899 ORTHO05D008566 1.2e-66 256.9 193 77.7
Sp4g25100 Schrenkiella parvula HOM05D006899 ORTHO05D008566 3.0e-62 242.3 193 78.2
CARHR138030 Cardamine hirsuta HOM05D006899 ORTHO05D008566 3.3e-61 238.8 195 75.9
AT2G42975 Arabidopsis thaliana HOM05D006899 ORTHO05D008566 4.4e-61 238.4 196 77.0
Carub.0004s2544 Capsella rubella HOM05D006899 ORTHO05D008566 1.8e-59 233.0 195 75.4
Aa31LG1G24750 Aethionema arabicum HOM05D006899 ORTHO05D008566 2.4e-59 232.6 189 70.4
Thhalv10017256m.g Eutrema salsugineum HOM05D006899 ORTHO05D008566 4.1e-59 231.9 202 80.2
AL4G41610 Arabidopsis lyrata HOM05D006899 ORTHO05D008566 1.6e-58 229.9 194 80.4
Rhsim04G0081600 Rhododendron simsii HOM05D006899 ORTHO05D008566 1.5e-45 186.8 196 60.7
vmacro09192 Vaccinium macrocarpon HOM05D006899 ORTHO05D008566 9.8e-45 184.1 194 59.8
CiPaw.04G138700 Carya illinoinensis HOM05D006899 ORTHO05D008566 1.7e-44 183.3 194 56.7
THA.LOC104802283 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 2.2e-44 183.0 193 63.7
QL08p044873 Quercus lobata HOM05D006899 ORTHO05D008566 3.7e-44 182.2 193 57.5
GSVIVG01020847001 Vitis vinifera HOM05D006899 ORTHO05D008566 3.7e-44 182.2 140 71.4
THA.LOC104803370 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 1.1e-43 180.6 194 63.9
Actinidia03641 Actinidia chinensis HOM05D006899 ORTHO05D008566 2.4e-43 179.5 124 79.0
Cc05_g09700 Coffea canephora HOM05D006899 ORTHO05D008566 5.4e-43 178.3 120 78.3
Ciclev10032884m.g Citrus clementina HOM05D006899 ORTHO05D008566 1.2e-42 177.2 124 76.6
Gohir.D07G086300 Gossypium hirsutum HOM05D006899 ORTHO05D008566 1.2e-42 177.2 123 78.0
Gorai.001G092300 Gossypium raimondii HOM05D006899 ORTHO05D008566 1.6e-42 176.8 123 78.0
VMungo0647G1903 Vigna mungo HOM05D006899 ORTHO05D008566 2.0e-42 176.4 124 77.4
Cpa.g.sc50.104 Carica papaya HOM05D006899 ORTHO05D008566 2.7e-42 176.0 124 77.4
Peaxi162Scf00111g00221 Petunia axillaris HOM05D006899 ORTHO05D008566 2.7e-42 176.0 121 77.7
Atru.chr6.2058 Acer truncatum HOM05D006899 ORTHO05D008566 3.5e-42 175.6 124 76.6
Cfa023072 Carpinus fangiana HOM05D006899 ORTHO05D008566 3.5e-42 175.6 124 79.0
Gohir.A07G080700 Gossypium hirsutum HOM05D006899 ORTHO05D008566 4.5e-42 175.3 123 77.2
SalBow7G1887 Salvia bowleyana HOM05D006899 ORTHO05D008566 4.5e-42 175.3 195 57.4
Haze_13530 Corylus avellana HOM05D006899 ORTHO05D008566 5.9e-42 174.9 124 78.2
PGSC0003DMG400017304 Solanum tuberosum HOM05D006899 ORTHO05D008566 5.9e-42 174.9 126 77.8
Phvul.008G193700 Phaseolus vulgaris HOM05D006899 ORTHO05D008566 7.7e-42 174.5 124 76.6
Glyma.02G285100 Glycine max HOM05D006899 ORTHO05D008566 1.3e-41 173.7 124 76.6
Nitab4.5_0002251g0050 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.3e-41 173.7 124 78.2
TAR627G0648 Trochodendron aralioides HOM05D006899 ORTHO05D008566 1.3e-41 173.7 196 54.1
Sopen07g029600 Solanum pennellii HOM05D006899 ORTHO05D008566 1.7e-41 173.3 126 77.0
Potri.005G204200 Populus trichocarpa HOM05D006899 ORTHO05D008566 2.3e-41 172.9 151 68.9
TWI59G0652 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 2.3e-41 172.9 151 66.2
CsaV3_4G031920 Cucumis sativus L. HOM05D006899 ORTHO05D008566 2.9e-41 172.6 124 76.6
Medtr5g091190 Medicago truncatula HOM05D006899 ORTHO05D008566 2.9e-41 172.6 189 55.6
Nitab4.5_0001883g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 2.9e-41 172.6 124 77.4
Solyc07g056240.3 Solanum lycopersicum HOM05D006899 ORTHO05D008566 2.9e-41 172.6 126 76.2
ClCG11G016470 Citrullus lanatus HOM05D006899 ORTHO05D008566 3.8e-41 172.2 124 75.8
TPR.G12679 Trifolium pratense HOM05D006899 ORTHO05D008566 5.0e-41 171.8 124 75.0
LjContig00049g0021241 Lotus japonicus HOM05D006899 ORTHO05D008566 6.6e-41 171.4 192 56.8
Sed0025977 Sechium edule HOM05D006899 ORTHO05D008566 6.6e-41 171.4 123 76.4
arahy.Tifrunner.gnm1.ann1.SNQ1P9 Arachis hypogaea HOM05D006899 ORTHO05D008566 8.6e-41 171.0 193 57.0
MELO3C026968.2 Cucumis melo HOM05D006899 ORTHO05D008566 8.6e-41 171.0 124 75.8
Glyma.14G029700 Glycine max HOM05D006899 ORTHO05D008566 1.1e-40 170.6 124 75.8
Nn4g26539 Nelumbo nucifera HOM05D006899 ORTHO05D008566 1.1e-40 170.6 125 76.0
Potri.002G058000 Populus trichocarpa HOM05D006899 ORTHO05D008566 1.1e-40 170.6 197 55.3
PGR042G1005 Punica granatum HOM05D006899 ORTHO05D008566 1.1e-40 170.6 149 65.8
Oeu020934.1 Olea europaea HOM05D006899 ORTHO05D008566 1.5e-40 170.2 194 56.2
arahy.Tifrunner.gnm1.ann1.226PX6 Arachis hypogaea HOM05D006899 ORTHO05D008566 2.5e-40 169.5 193 57.0
CANSAT64G2357 Cannabis sativa HOM05D006899 ORTHO05D008566 2.5e-40 169.5 123 75.6
COL.COLO4_08896 Corchorus olitorius HOM05D006899 ORTHO05D008566 2.5e-40 169.5 126 73.8
Oeu013822.1 Olea europaea HOM05D006899 ORTHO05D008566 3.3e-40 169.1 121 75.2
Manes.10G088300 Manihot esculenta HOM05D006899 ORTHO05D008566 4.3e-40 168.7 122 73.8
MD09G1149700 Malus domestica HOM05D006899 ORTHO05D008566 5.6e-40 168.3 125 74.4
SGA_v2.0_scaffold4G02123 Striga asiatica HOM05D006899 ORTHO05D008566 5.6e-40 168.3 127 74.0
MD17G1136600 Malus domestica HOM05D006899 ORTHO05D008566 7.2e-40 167.9 121 76.0
Prupe.3G176400 Prunus persica HOM05D006899 ORTHO05D008566 7.2e-40 167.9 121 76.0
Sc13g0007020 Simmondsia chinensis HOM05D006899 ORTHO05D008566 7.2e-40 167.9 124 74.2
Thecc.01G170200 Theobroma cacao HOM05D006899 ORTHO05D008566 1.2e-39 167.2 122 75.4
Hund24233 Selenicereus undatus HOM05D006899 ORTHO05D008566 1.6e-39 166.8 130 70.8
MSTRG.12841 Avicennia marina HOM05D006899 ORTHO05D008566 3.6e-39 165.6 121 76.0
Migut.E01772 Erythranthe guttata HOM05D006899 ORTHO05D008566 4.7e-39 165.2 153 62.7
FvH4_6g38570 Fragaria vesca HOM05D006899 ORTHO05D008566 1.0e-38 164.1 187 54.0
FAN02G3475 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.0e-38 164.1 118 73.7
FAN14G2046 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.0e-38 164.1 118 73.7
FAN09G4704 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.8e-38 163.3 187 54.0
FAN05G4631 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.5e-37 160.2 118 72.0
Lj1P601T16 Lonicera japonica HOM05D006899 ORTHO05D008566 1.5e-37 160.2 89 89.9
EL10Ac9g22843 Beta vulgaris HOM05D006899 ORTHO05D008566 2.0e-37 159.8 123 75.6
AUR62015134 Chenopodium quinoa HOM05D006899 ORTHO05D008566 2.6e-37 159.5 159 61.6
Eucgr.A02015 Eucalyptus grandis HOM05D006899 ORTHO05D008566 2.6e-37 159.5 127 70.9
RcHm_v2.0_Chr2g0151981 Rosa chinensis HOM05D006899 ORTHO05D008566 2.6e-37 159.5 118 72.0
ECA233G0523 Erigeron canadensis HOM05D006899 ORTHO05D008566 7.5e-37 157.9 121 70.2
Duzib138G0065 Durio zibethinus HOM05D006899 ORTHO05D008566 3.7e-36 155.6 113 76.1
Sabra02G0047300 Salix brachista HOM05D006899 ORTHO05D008566 8.3e-36 154.5 151 62.3
Aqoxy1G02918 Aquilegia oxysepala HOM05D006899 ORTHO05D008566 3.2e-35 152.5 127 69.3
AUR62017595 Chenopodium quinoa HOM05D006899 ORTHO05D008566 5.4e-35 151.8 159 59.1
Lalb_Chr04g0248871 Lupinus albus HOM05D006899 ORTHO05D008566 2.0e-34 149.8 87 86.2
HanXRQChr17g0554721 Helianthus annuus HOM05D006899 ORTHO05D008566 3.5e-34 149.1 121 66.9
Ah.01g013620 Amaranthus hybridus HOM05D006899 ORTHO05D008566 3.9e-33 145.6 102 76.5
CSS0032532 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 6.6e-33 144.8 124 67.7
Dinv09142 Davidia involucrata HOM05D006899 ORTHO05D008566 1.1e-32 144.1 131 63.4
Duzib133G1045 Durio zibethinus HOM05D006899 ORTHO05D008566 2.5e-32 142.9 108 69.4
MBI10_g21113_MAGBIO Magnolia biondii HOM05D006899 ORTHO05D008566 4.7e-31 138.7 120 66.7
Lsat_1_v5_gn_8_137860 Lactuca sativa HOM05D006899 ORTHO05D008566 6.8e-30 134.8 118 63.6
Os01g0666600 Oryza sativa ssp. japonica HOM05D006899 ORTHO05D008566 1.2e-29 134.0 124 60.5
CSS0025344 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 5.4e-27 125.2 124 61.3
CDE05G0801 Ceratophyllum demersum HOM05D006899 ORTHO05D008566 7.0e-27 124.8 123 61.8
PSO478G1301 Papaver somniferum HOM05D006899 ORTHO05D008566 1.6e-26 123.6 123 59.3
PSO675G8667 Papaver somniferum HOM05D006899 ORTHO05D008566 1.6e-26 123.6 123 59.3
Zm00001eb157430 Zea mays HOM05D006899 ORTHO05D008566 3.5e-26 122.5 126 55.6
Nitab4.5_0004243g0030 Nicotiana tabacum HOM05D006899 ORTHO05D008566 6.0e-26 121.7 83 79.5
PSO541G6147 Papaver somniferum HOM05D006899 ORTHO05D008566 7.8e-26 121.3 123 58.5
HPP92_010055 Vanilla planifolia HOM05D006899 ORTHO05D008566 1.5e-24 117.1 121 57.0
unitig_60.g25592 Utricularia gibba HOM05D006899 ORTHO05D008566 7.3e-24 114.8 122 55.7
Nitab4.5_0004950g0010 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.6e-23 113.6 81 77.8
Nitab4.5_0009604g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.6e-23 113.6 81 77.8
Hund24244 Selenicereus undatus HOM05D006899 ORTHO05D008566 1.6e-23 113.6 97 64.9
ATR0585G139 Amborella trichopoda HOM05D006899 ORTHO05D008566 1.4e-22 110.5 115 56.5
Pp3c13_6560 Physcomitrium patens HOM05D006899 ORTHO05D008566 4.4e-21 105.5 121 47.1
Mapoly0120s0054 Marchantia polymorpha HOM05D006899 ORTHO05D008566 1.0e-17 94.4 122 45.9
AagrBONN_evm.TU.Sc2ySwM_368.298 Anthoceros agrestis HOM05D006899 ORTHO05D008566 1.3e-17 94.0 125 42.4
Nitab4.5_0002251g0080 Nicotiana tabacum HOM05D006899 ORTHO05D008566 3.3e-16 89.4 114 49.1
TWI23G0441 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 4.9e-12 75.5 92 52.2
SMO353G0201 Selaginella moellendorffii HOM05D006899 ORTHO05D008566 6.4e-12 75.1 90 48.9
Medtr5g016040 Medicago truncatula HOM05D006899 ORTHO05D008566 1.1e-11 74.3 86 54.7


User provided reference genes

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