Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 7.2e-62 240.4 117 100.0
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 7.2e-62 240.4 117 100.0
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 3.5e-56 221.5 117 93.2
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 1.0e-55 219.9 117 92.3
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 8.5e-55 216.9 117 90.6
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 1.5e-54 216.1 117 90.6
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 1.5e-54 216.1 117 90.6
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 7.2e-54 213.8 117 88.9
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 7.2e-54 213.8 117 90.6
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 1.2e-53 213.0 117 90.6
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 2.1e-53 212.2 117 90.6
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 2.1e-53 212.2 117 90.6
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 2.1e-53 212.2 117 90.6
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 4.7e-53 211.1 117 89.7
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 1.4e-52 209.5 116 91.4
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 1.4e-52 209.5 116 91.4
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 1.8e-52 209.1 120 89.2
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 1.8e-52 209.1 114 92.1
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 3.0e-52 208.4 117 88.0
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 4.0e-52 208.0 114 91.2
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 6.7e-52 207.2 116 90.5
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 6.7e-52 207.2 117 88.0
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 2.6e-51 205.3 117 87.2
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 9.7e-51 203.4 117 86.3
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 1.7e-50 202.6 115 86.1
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 3.7e-50 201.4 109 89.9
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 3.7e-50 201.4 109 89.9
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.4e-49 199.5 117 85.5
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 5.3e-49 197.6 117 81.2
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 1.2e-48 196.4 118 82.2
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 8.5e-47 190.3 106 82.1
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 2.7e-45 185.3 117 78.6
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 6.3e-42 174.1 116 71.6
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 8.3e-42 173.7 121 70.2
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 5.4e-41 171.0 121 69.4
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 5.4e-41 171.0 117 70.9
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 1.6e-40 169.5 95 77.9
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 3.5e-40 168.3 121 69.4
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 3.5e-40 168.3 121 69.4
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 3.5e-40 168.3 92 79.3
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 7.7e-40 167.2 109 72.5
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 7.7e-40 167.2 96 80.2
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 7.7e-40 167.2 103 75.7
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 1.3e-39 166.4 115 64.3
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.7e-39 166.0 109 71.6
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 2.9e-39 165.2 121 65.3
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 2.9e-39 165.2 96 80.2
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 6.6e-39 164.1 111 70.3
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 6.6e-39 164.1 97 77.3
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 6.6e-39 164.1 96 79.2
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 6.6e-39 164.1 96 79.2
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 1.1e-38 163.3 117 65.0
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 1.5e-38 162.9 96 78.1
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 1.5e-38 162.9 96 77.1
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.9e-38 162.5 97 76.3
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 1.9e-38 162.5 97 76.3
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.5e-38 162.2 97 76.3
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 3.3e-38 161.8 117 65.0
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 3.3e-38 161.8 97 76.3
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 3.3e-38 161.8 105 71.4
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 3.3e-38 161.8 100 71.0
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 4.2e-38 161.4 115 67.8
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 4.2e-38 161.4 120 65.0
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 5.5e-38 161.0 116 69.0
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 7.2e-38 160.6 96 76.0
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 7.2e-38 160.6 120 65.0
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 7.2e-38 160.6 118 67.8
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 7.2e-38 160.6 107 71.0
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 7.2e-38 160.6 109 69.7
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 9.5e-38 160.2 123 62.6
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 1.2e-37 159.8 96 78.1
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 1.6e-37 159.5 116 65.5
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 2.1e-37 159.1 112 67.9
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 3.6e-37 158.3 119 66.4
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 4.7e-37 157.9 118 64.4
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 6.1e-37 157.5 119 64.7
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 6.1e-37 157.5 97 74.2
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 6.1e-37 157.5 93 75.3
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 8.0e-37 157.1 107 68.2
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 8.0e-37 157.1 87 78.2
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 1.0e-36 156.8 87 80.5
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 1.0e-36 156.8 120 66.7
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.0e-36 156.8 94 73.4
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.0e-36 156.8 94 73.4
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 1.4e-36 156.4 110 68.2
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 1.4e-36 156.4 84 82.1
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 1.4e-36 156.4 87 80.5
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 1.8e-36 156.0 120 64.2
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 2.3e-36 155.6 116 62.1
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 3.0e-36 155.2 90 80.0
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 4.0e-36 154.8 104 67.3
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 4.0e-36 154.8 96 75.0
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 5.2e-36 154.5 97 73.2
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 5.2e-36 154.5 83 81.9
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 6.8e-36 154.1 90 75.6
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 6.8e-36 154.1 122 63.1
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 8.9e-36 153.7 116 62.9
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 8.9e-36 153.7 121 63.6
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 8.9e-36 153.7 86 75.6
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.5e-35 152.9 113 62.8
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 2.0e-35 152.5 95 73.7
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 2.6e-35 152.1 112 67.0
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 2.6e-35 152.1 94 73.4
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 3.4e-35 151.8 115 60.9
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 4.4e-35 151.4 98 70.4
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 4.4e-35 151.4 99 70.7
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 5.7e-35 151.0 118 61.0
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 7.5e-35 150.6 111 62.2
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 7.5e-35 150.6 111 62.2
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 9.8e-35 150.2 111 63.1
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 1.3e-34 149.8 116 63.8
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 1.3e-34 149.8 82 79.3
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 1.7e-34 149.4 105 62.9
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 1.7e-34 149.4 120 59.2
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 2.2e-34 149.1 113 61.9
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 2.8e-34 148.7 117 59.8
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 2.8e-34 148.7 78 80.8
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 4.9e-34 147.9 111 63.1
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 6.3e-34 147.5 117 61.5
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 8.3e-34 147.1 110 63.6
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 8.3e-34 147.1 120 62.5
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 8.3e-34 147.1 121 59.5
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 1.8e-33 146.0 87 75.9
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 4.1e-33 144.8 105 65.7
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 1.2e-32 143.3 105 63.8
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.6e-32 142.9 104 63.5
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 1.6e-32 142.9 107 61.7
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 3.5e-32 141.7 105 62.9
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 3.5e-32 141.7 105 62.9
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 4.5e-32 141.4 80 76.2
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 7.8e-32 140.6 77 76.6
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.3e-31 139.8 105 61.9
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 2.9e-31 138.7 84 70.2
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 2.9e-31 138.7 87 71.3
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 8.6e-31 137.1 105 61.9
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 1.5e-30 136.3 119 58.0
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 9.5e-30 133.7 119 56.3
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 2.8e-29 132.1 122 55.7
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 1.0e-28 130.2 78 69.2
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 4.4e-27 124.8 78 66.7
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 5.8e-27 124.4 69 87.0
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 2.9e-26 122.1 72 77.8
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 2.0e-24 115.9 78 65.4
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 2.5e-22 109.0 76 71.1
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 8.0e-21 104.0 69 66.7
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 8.9e-20 100.5 83 55.4
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 7.5e-19 97.4 82 53.7
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 2.2e-18 95.9 72 72.2
Aa31LG3G1100 Aethionema arabicum HOM05D004651 ORTHO05D005761 6.4e-18 94.4 115 53.0
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 1.4e-17 93.2 53 79.2
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 1.9e-17 92.8 61 72.1
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 7.8e-16 87.4 111 45.0
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 1.1e-14 83.6 73 50.7
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 1.2e-11 73.6 64 53.1
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 2.9e-10 68.9 71 47.9
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 4.6e-08 61.6 61 54.1
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 1.0e-07 60.5 56 55.4


User provided reference genes

Program Settings