Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 1.5e-107 392.9 206 100.0
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 1.1e-84 317.0 194 87.1
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 6.9e-84 314.3 161 98.8
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 6.9e-84 314.3 161 98.8
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 6.9e-84 314.3 161 98.8
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 5.8e-83 311.2 161 97.5
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 5.8e-83 311.2 161 97.5
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 5.8e-83 311.2 161 97.5
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 1.7e-82 309.7 161 96.9
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 2.9e-82 308.9 158 98.1
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 6.5e-82 307.8 158 97.5
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 1.1e-78 297.0 161 94.4
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 1.5e-78 296.6 161 94.4
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 4.3e-78 295.0 161 92.5
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 7.4e-78 294.3 161 93.2
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 2.8e-77 292.4 161 91.3
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 9.0e-76 287.3 161 90.7
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 7.6e-75 284.3 161 88.2
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 2.2e-74 282.7 161 87.6
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 3.8e-74 282.0 165 85.5
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 4.6e-72 275.0 161 85.7
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 1.1e-70 270.4 164 81.7
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 6.5e-66 254.6 155 78.7
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 5.5e-65 251.5 163 74.2
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 5.5e-65 251.5 163 74.2
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 5.5e-65 251.5 163 74.2
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 5.5e-65 251.5 163 74.2
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 5.5e-65 251.5 163 74.2
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 5.5e-65 251.5 163 74.2
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 9.4e-65 250.8 161 75.8
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 9.4e-65 250.8 154 77.9
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 1.2e-64 250.4 155 78.1
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 4.6e-64 248.4 156 75.0
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 6.1e-64 248.1 163 73.6
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 7.9e-64 247.7 150 78.0
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 7.9e-64 247.7 163 73.0
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 1.4e-63 246.9 161 73.9
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 1.4e-63 246.9 163 72.4
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 1.8e-63 246.5 161 72.0
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.8e-63 246.5 143 85.3
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 2.3e-63 246.1 150 78.7
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 2.3e-63 246.1 150 78.7
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 2.3e-63 246.1 156 75.0
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 3.0e-63 245.7 159 74.2
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 3.9e-63 245.4 155 76.8
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 6.7e-63 244.6 159 74.2
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 1.1e-62 243.8 161 72.0
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 1.1e-62 243.8 158 74.7
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 3.3e-62 242.3 161 72.7
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 4.4e-62 241.9 150 77.3
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 7.4e-62 241.1 161 72.7
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 7.4e-62 241.1 155 74.2
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 9.7e-62 240.7 150 74.0
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 1.3e-61 240.4 156 72.4
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 2.8e-61 239.2 158 72.2
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 2.8e-61 239.2 150 74.0
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 3.7e-61 238.8 150 76.0
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 3.7e-61 238.8 156 71.8
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 3.7e-61 238.8 150 75.3
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 6.3e-61 238.0 150 76.0
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 6.3e-61 238.0 150 76.0
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 8.2e-61 237.7 150 72.7
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.1e-60 237.3 150 73.3
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 1.4e-60 236.9 162 70.4
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 1.4e-60 236.9 161 70.2
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.4e-60 236.9 156 71.2
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 1.4e-60 236.9 149 76.5
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 1.8e-60 236.5 179 65.9
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 3.1e-60 235.7 157 71.3
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 4.1e-60 235.3 156 71.8
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 4.1e-60 235.3 156 71.8
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 4.1e-60 235.3 150 74.0
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 5.3e-60 235.0 155 71.6
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 6.9e-60 234.6 150 76.0
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 6.9e-60 234.6 160 71.2
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 6.9e-60 234.6 149 75.8
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 9.1e-60 234.2 156 71.2
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 9.1e-60 234.2 156 70.5
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 1.2e-59 233.8 154 73.4
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 1.5e-59 233.4 150 76.0
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 1.5e-59 233.4 155 71.0
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 2.0e-59 233.0 149 75.8
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 2.6e-59 232.6 153 73.9
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 3.4e-59 232.3 155 71.0
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 4.5e-59 231.9 155 73.5
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 7.7e-59 231.1 150 74.0
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 1.3e-58 230.3 150 74.0
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 1.7e-58 229.9 155 69.7
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 2.2e-58 229.6 155 72.3
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 3.8e-58 228.8 161 70.2
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 3.8e-58 228.8 189 62.4
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 3.8e-58 228.8 150 72.0
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 5.0e-58 228.4 150 72.0
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 1.4e-57 226.9 161 66.5
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 7.2e-57 224.6 161 67.7
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 7.2e-57 224.6 156 69.2
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 7.2e-57 224.6 158 69.6
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 2.7e-56 222.6 150 68.0
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 7.9e-56 221.1 161 68.9
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 1.0e-55 220.7 134 78.4
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 1.8e-55 219.9 150 69.3
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 3.0e-55 219.2 158 67.7
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 3.9e-55 218.8 156 67.3
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 1.1e-54 217.2 156 66.0
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 1.5e-54 216.9 205 56.1
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 2.0e-54 216.5 161 67.1
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 2.0e-54 216.5 156 67.3
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 2.6e-54 216.1 150 70.0
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 3.3e-54 215.7 163 67.5
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 3.3e-54 215.7 163 67.5
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 1.3e-53 213.8 135 76.3
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 6.3e-53 211.5 150 68.7
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 8.2e-53 211.1 159 62.3
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 2.4e-52 209.5 146 69.9
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 3.5e-51 205.7 146 67.1
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 7.7e-51 204.5 140 70.0
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 1.7e-50 203.4 125 77.6
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 3.8e-50 202.2 245 47.3
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 1.4e-47 193.7 162 63.0
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 2.3e-47 193.0 122 77.0
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 5.2e-47 191.8 101 96.0
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 4.8e-45 185.3 212 47.6
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 8.2e-45 184.5 140 70.0
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 1.8e-44 183.3 160 55.0
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 3.1e-44 182.6 163 57.7
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 5.3e-44 181.8 110 78.2
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 2.2e-42 176.4 124 69.4
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 3.0e-39 166.0 293 36.9
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 4.0e-39 165.6 188 46.8
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 6.3e-37 158.3 148 66.9
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 2.4e-36 156.4 140 59.3
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 2.0e-35 153.3 121 71.9
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 2.3e-34 149.8 149 51.0
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 7.2e-33 144.8 153 50.3
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 1.2e-32 144.1 149 50.3
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 1.8e-31 140.2 90 74.4
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 7.5e-30 134.8 148 52.0
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 9.8e-30 134.4 150 46.7
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 1.3e-29 134.0 109 62.4
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 1.8e-28 130.2 123 61.0
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 2.9e-26 122.9 143 46.2
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 1.5e-25 120.6 103 69.9
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 9.5e-25 117.9 161 47.8
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 1.5e-22 110.5 126 43.7
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 3.2e-20 102.8 72 68.1
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 3.2e-20 102.8 72 68.1
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 7.0e-20 101.7 65 72.3
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 9.2e-20 101.3 65 72.3
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 1.7e-18 97.1 64 71.9
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 8.6e-18 94.7 127 40.9
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 2.5e-17 93.2 64 68.8
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 1.1e-09 67.8 146 34.9
AT3G57900 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 4.3e-09 65.9 96 43.8
SMO116G0085 Selaginella moellendorffii HOM05D004743 ORTHO05D005698 7.3e-09 65.1 145 30.3
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 2.0e-06 57.0 45 60.0
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 5.8e-06 55.5 45 57.8


User provided reference genes

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