Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29184 Brassica carinata HOM05D005318 ORTHO05D006791 0.0e+00 1101.7 540 100.0
BraA05t19191Z Brassica rapa HOM05D005318 ORTHO05D006791 3.8e-267 924.5 483 93.2
A05p01930 Brassica napus HOM05D005318 ORTHO05D006791 6.5e-267 923.7 483 93.2
BcaC02g12738 Brassica carinata HOM05D005318 ORTHO05D006791 3.0e-264 914.8 483 93.2
BolC4t21874H Brassica oleracea HOM05D005318 ORTHO05D006791 8.8e-264 913.3 483 92.1
C04p02280 Brassica napus HOM05D005318 ORTHO05D006791 1.6e-260 902.5 509 87.6
Sp4g23170 Schrenkiella parvula HOM05D005318 ORTHO05D006791 1.5e-258 896.0 483 90.5
AL4G38790 Arabidopsis lyrata HOM05D005318 ORTHO05D006791 4.1e-253 877.9 483 88.8
Thhalv10016195m.g Eutrema salsugineum HOM05D005318 ORTHO05D006791 7.7e-252 873.6 483 88.2
Carub.0004s2316 Capsella rubella HOM05D005318 ORTHO05D006791 7.2e-250 867.1 483 88.0
AT2G40840 Arabidopsis thaliana HOM05D005318 ORTHO05D006791 2.1e-249 865.5 483 87.2
Aa31LG3G1260 Aethionema arabicum HOM05D005318 ORTHO05D006791 3.1e-245 851.7 483 84.7
CARHR135960 Cardamine hirsuta HOM05D005318 ORTHO05D006791 3.1e-245 851.7 483 86.3
THA.LOC104803226 Tarenaya hassleriana HOM05D005318 ORTHO05D006791 1.1e-224 783.5 483 78.3
TWI74G0513 Tripterygium wilfordii HOM05D005318 ORTHO05D006791 1.2e-191 673.7 483 66.5
Lsat_1_v5_gn_8_83900 Lactuca sativa HOM05D005318 ORTHO05D006791 1.1e-189 667.2 488 65.4
Sc19g0007930 Simmondsia chinensis HOM05D005318 ORTHO05D006791 4.2e-189 665.2 483 65.8
Cfa019951 Carpinus fangiana HOM05D005318 ORTHO05D006791 1.2e-188 663.7 477 66.5
HanXRQChr06g0177301 Helianthus annuus HOM05D005318 ORTHO05D006791 1.2e-188 663.7 485 65.2
CSS0014915 Camellia sinensis var. sinensis HOM05D005318 ORTHO05D006791 1.6e-188 663.3 469 67.2
Ciclev10010989m.g Citrus clementina HOM05D005318 ORTHO05D006791 2.1e-188 662.9 489 64.8
EL10Ac3g07301 Beta vulgaris HOM05D005318 ORTHO05D006791 1.0e-187 660.6 494 64.8
Actinidia37854 Actinidia chinensis HOM05D005318 ORTHO05D006791 2.3e-187 659.4 477 66.0
Atru.chr1.1378 Acer truncatum HOM05D005318 ORTHO05D006791 5.1e-187 658.3 483 66.3
RcHm_v2.0_Chr3g0494731 Rosa chinensis HOM05D005318 ORTHO05D006791 5.1e-187 658.3 470 66.0
Prupe.7G019400 Prunus persica HOM05D005318 ORTHO05D006791 6.7e-187 657.9 483 66.0
ECA236G3220 Erigeron canadensis HOM05D005318 ORTHO05D006791 8.7e-187 657.5 485 63.5
Potri.006G031700 Populus trichocarpa HOM05D005318 ORTHO05D006791 8.7e-187 657.5 476 66.0
Hund24536 Selenicereus undatus HOM05D005318 ORTHO05D006791 1.5e-186 656.8 493 64.5
CiPaw.09G051900 Carya illinoinensis HOM05D005318 ORTHO05D006791 4.3e-186 655.2 483 64.6
Thecc.05G118400 Theobroma cacao HOM05D005318 ORTHO05D006791 7.4e-186 654.4 484 65.7
Manes.08G162200 Manihot esculenta HOM05D005318 ORTHO05D006791 9.6e-186 654.1 476 65.5
PGR142G3097 Punica granatum HOM05D005318 ORTHO05D006791 9.6e-186 654.1 483 64.4
Gohir.A06G109000 Gossypium hirsutum HOM05D005318 ORTHO05D006791 1.4e-184 650.2 466 66.3
QL07p013739 Quercus lobata HOM05D005318 ORTHO05D006791 1.8e-184 649.8 484 65.3
Duzib128G1115 Durio zibethinus HOM05D005318 ORTHO05D006791 2.4e-184 649.4 471 66.0
Gorai.010G128900 Gossypium raimondii HOM05D005318 ORTHO05D006791 3.1e-184 649.0 466 65.7
Gohir.D06G113100 Gossypium hirsutum HOM05D005318 ORTHO05D006791 5.3e-184 648.3 466 65.7
FAN23G1756 Fragaria x ananassa HOM05D005318 ORTHO05D006791 6.9e-184 647.9 469 65.0
Potri.016G028900 Populus trichocarpa HOM05D005318 ORTHO05D006791 1.2e-183 647.1 484 66.1
Dinv26400 Davidia involucrata HOM05D005318 ORTHO05D006791 2.0e-183 646.4 477 65.4
Eucgr.K01679 Eucalyptus grandis HOM05D005318 ORTHO05D006791 2.0e-183 646.4 466 64.6
Ah.04g150540 Amaranthus hybridus HOM05D005318 ORTHO05D006791 3.4e-183 645.6 483 63.8
FvH4_1g29260 Fragaria vesca HOM05D005318 ORTHO05D006791 5.8e-183 644.8 469 64.6
Glyma.19G125800 Glycine max HOM05D005318 ORTHO05D006791 5.5e-181 638.3 484 64.0
MELO3C019135.2 Cucumis melo HOM05D005318 ORTHO05D006791 1.2e-180 637.1 483 63.1
Ca_08698_v3 Cicer arietinum L. HOM05D005318 ORTHO05D006791 2.1e-180 636.3 463 63.7
Sed0003650 Sechium edule HOM05D005318 ORTHO05D006791 2.1e-180 636.3 485 63.9
GSVIVG01025810001 Vitis vinifera HOM05D005318 ORTHO05D006791 3.5e-180 635.6 485 63.3
Psat0s698g0160 Pisum sativum HOM05D005318 ORTHO05D006791 7.9e-180 634.4 464 62.7
Glyma.03G121100 Glycine max HOM05D005318 ORTHO05D006791 1.3e-179 633.6 471 63.9
TPR.G23186 Trifolium pratense HOM05D005318 ORTHO05D006791 2.3e-179 632.9 484 61.8
Lalb_Chr14g0365451 Lupinus albus HOM05D005318 ORTHO05D006791 3.9e-179 632.1 469 63.8
Lj1g0025305 Lotus japonicus HOM05D005318 ORTHO05D006791 1.5e-178 630.2 484 63.2
CANSAT64G0498 Cannabis sativa HOM05D005318 ORTHO05D006791 3.3e-178 629.0 467 63.4
SalBow1G2268 Salvia bowleyana HOM05D005318 ORTHO05D006791 5.7e-178 628.2 489 61.8
DCAR_013530 Daucus carota HOM05D005318 ORTHO05D006791 1.8e-176 623.2 468 63.0
Medtr7g088740 Medicago truncatula HOM05D005318 ORTHO05D006791 9.0e-176 620.9 464 61.9
Solyc02g020980.4 Solanum lycopersicum HOM05D005318 ORTHO05D006791 2.0e-175 619.8 460 63.5
vmacro07764 Vaccinium macrocarpon HOM05D005318 ORTHO05D006791 5.9e-175 618.2 519 59.5
PSO339G3620 Papaver somniferum HOM05D005318 ORTHO05D006791 2.9e-174 615.9 469 62.7
PSO384G1877 Papaver somniferum HOM05D005318 ORTHO05D006791 3.2e-173 612.5 469 62.3
MD00G1025200 Malus domestica HOM05D005318 ORTHO05D006791 4.2e-173 612.1 483 61.7
Aqoxy1G00050 Aquilegia oxysepala HOM05D005318 ORTHO05D006791 9.3e-173 610.9 473 64.1
AUR62021029 Chenopodium quinoa HOM05D005318 ORTHO05D006791 1.3e-171 607.1 457 63.9
Migut.K00161 Erythranthe guttata HOM05D005318 ORTHO05D006791 8.8e-171 604.4 487 61.6
Haze_20288 Corylus avellana HOM05D005318 ORTHO05D006791 5.7e-170 601.7 509 59.7
Os07g0662900 Oryza sativa ssp. japonica HOM05D005318 ORTHO05D006791 1.7e-169 600.1 475 61.7
Zm00001eb329980 Zea mays HOM05D005318 ORTHO05D006791 4.1e-168 595.5 472 61.2
arahy.Tifrunner.gnm1.ann1.HZCB2X Arachis hypogaea HOM05D005318 ORTHO05D006791 9.1e-168 594.3 470 61.5
Cpa.g.sc92.60 Carica papaya HOM05D005318 ORTHO05D006791 9.1e-168 594.3 483 61.5
arahy.Tifrunner.gnm1.ann1.PFNU0X Arachis hypogaea HOM05D005318 ORTHO05D006791 5.9e-167 591.7 470 61.3
CDE08G1108 Ceratophyllum demersum HOM05D005318 ORTHO05D006791 1.7e-166 590.1 471 62.2
CsaV3_4G029230 Cucumis sativus L. HOM05D005318 ORTHO05D006791 2.2e-166 589.7 483 60.0
HPP92_014255 Vanilla planifolia HOM05D005318 ORTHO05D006791 7.2e-165 584.7 474 59.1
Sabra06G0021100 Salix brachista HOM05D005318 ORTHO05D006791 1.2e-164 583.9 525 57.5
TAR633G2118 Trochodendron aralioides HOM05D005318 ORTHO05D006791 1.8e-163 580.1 484 60.5
ClCG04G005890 Citrullus lanatus HOM05D005318 ORTHO05D006791 2.0e-162 576.6 486 59.5
AUR62018414 Chenopodium quinoa HOM05D005318 ORTHO05D006791 1.0e-155 554.3 457 60.0
CAN.G39.14 Capsicum annuum HOM05D005318 ORTHO05D006791 1.4e-155 553.9 459 59.5
Oeu060769.1 Olea europaea HOM05D005318 ORTHO05D006791 3.9e-155 552.4 496 56.5
MBI19_g45589_MAGBIO Magnolia biondii HOM05D005318 ORTHO05D006791 5.7e-154 548.5 483 58.2
ATR0782G050 Amborella trichopoda HOM05D005318 ORTHO05D006791 6.3e-153 545.0 532 53.2
RhsimUnG0019600 Rhododendron simsii HOM05D005318 ORTHO05D006791 4.4e-146 522.3 483 58.0
Sabra16G0033000 Salix brachista HOM05D005318 ORTHO05D006791 1.3e-145 520.8 497 55.5
Lj2A411T33 Lonicera japonica HOM05D005318 ORTHO05D006791 5.3e-144 515.4 493 52.5
SGA_v2.0_scaffold240G44129 Striga asiatica HOM05D005318 ORTHO05D006791 1.2e-143 514.2 483 55.1
Oeu064748.1 Olea europaea HOM05D005318 ORTHO05D006791 1.1e-136 491.1 454 56.2
AagrBONN_evm.TU.Sc2ySwM_344.1228 Anthoceros agrestis HOM05D005318 ORTHO05D006791 1.5e-133 480.7 471 50.5
Mapoly0011s0190 Marchantia polymorpha HOM05D005318 ORTHO05D006791 1.2e-130 471.1 469 50.3
unitig_736.g22282 Utricularia gibba HOM05D005318 ORTHO05D006791 2.8e-129 466.5 452 52.9
FAN19G2285 Fragaria x ananassa HOM05D005318 ORTHO05D006791 2.8e-124 449.9 430 54.0
Pp3c15_25660 Physcomitrium patens HOM05D005318 ORTHO05D006791 7.5e-122 441.8 471 48.4
SMO327G0045 Selaginella moellendorffii HOM05D005318 ORTHO05D006791 5.6e-117 425.6 472 48.1
Peaxi162Scf01017g00017 Petunia axillaris HOM05D005318 ORTHO05D006791 7.8e-111 405.2 341 58.9
Hma1.2p1_1135F.1_g260440 Hydrangea macrophylla HOM05D005318 ORTHO05D006791 3.0e-110 403.3 353 55.8
Phvul.001G117500 Phaseolus vulgaris HOM05D005318 ORTHO05D006791 4.3e-109 399.4 320 57.5
SMO203G0025 Selaginella moellendorffii HOM05D005318 ORTHO05D006791 2.9e-105 386.7 465 46.2
RhsimUnG0019100 Rhododendron simsii HOM05D005318 ORTHO05D006791 3.6e-100 369.8 340 55.9
FAN26G2899 Fragaria x ananassa HOM05D005318 ORTHO05D006791 8.9e-99 365.2 496 43.3
CBR_g6687 Chara braunii HOM05D005318 ORTHO05D006791 1.3e-97 361.3 456 44.1
Cc06_g21270 Coffea canephora HOM05D005318 ORTHO05D006791 2.1e-95 354.0 209 78.5
RhsimUnG0019400 Rhododendron simsii HOM05D005318 ORTHO05D006791 1.6e-84 317.8 320 50.6
MCO02G281 Micromonas commoda HOM05D005318 ORTHO05D006791 2.7e-79 300.4 504 36.9
Cre02.g095126 Chlamydomonas reinhardtii HOM05D005318 ORTHO05D006791 1.6e-76 291.2 484 36.6
Nitab4.5_0000092g0030 Nicotiana tabacum HOM05D005318 ORTHO05D006791 7.6e-74 282.3 343 44.9
Cc06_g21280 Coffea canephora HOM05D005318 ORTHO05D006791 3.5e-71 273.5 224 56.7
Peaxi162Scf00002g04712 Petunia axillaris HOM05D005318 ORTHO05D006791 1.9e-56 224.6 307 43.6
Sopen02g004500 Solanum pennellii HOM05D005318 ORTHO05D006791 6.3e-52 209.5 143 71.3
Nitab4.5_0000092g0020 Nicotiana tabacum HOM05D005318 ORTHO05D006791 2.2e-49 201.1 136 70.6
Nitab4.5_0001388g0020 Nicotiana tabacum HOM05D005318 ORTHO05D006791 3.8e-49 200.3 136 69.9
Zm00001eb002650 Zea mays HOM05D005318 ORTHO05D006791 3.8e-49 200.3 140 72.9
PRCOL_00001049 Prasinoderma coloniale HOM05D005318 ORTHO05D006791 1.1e-48 198.7 591 27.9
Peaxi162Scf00002g04713 Petunia axillaris HOM05D005318 ORTHO05D006791 9.7e-45 185.7 129 68.2
Zm00001eb016430 Zea mays HOM05D005318 ORTHO05D006791 2.2e-44 184.5 188 55.9
Nitab4.5_0001388g0030 Nicotiana tabacum HOM05D005318 ORTHO05D006791 3.1e-43 180.6 165 54.5
Phvul.001G117700 Phaseolus vulgaris HOM05D005318 ORTHO05D006791 8.2e-36 156.0 96 76.0
Peaxi162Scf01017g00016 Petunia axillaris HOM05D005318 ORTHO05D006791 5.0e-33 146.7 96 70.8
Sopen02g004480 Solanum pennellii HOM05D005318 ORTHO05D006791 2.5e-32 144.4 129 51.2
Sopen00g008430 Solanum pennellii HOM05D005318 ORTHO05D006791 3.6e-31 140.6 101 61.4
CDE09G0019 Ceratophyllum demersum HOM05D005318 ORTHO05D006791 3.8e-25 120.6 69 78.3
Medtr8g064950 Medicago truncatula HOM05D005318 ORTHO05D006791 3.4e-21 107.5 65 66.2
COL.COLO4_33521 Corchorus olitorius HOM05D005318 ORTHO05D006791 3.1e-19 100.9 93 53.8
EL10Ac5g11635 Beta vulgaris HOM05D005318 ORTHO05D006791 4.5e-18 97.1 103 54.4
A03p22980 Brassica napus HOM05D005318 ORTHO05D042171 4.0e-14 84.0 57 71.9
BraA03t11521Z Brassica rapa HOM05D005318 ORTHO05D042171 4.0e-14 84.0 57 71.9


User provided reference genes

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