Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 3.1e-93 345.1 175 100.0
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 5.7e-87 324.3 175 95.4
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 2.2e-86 322.4 175 91.4
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 8.2e-86 320.5 175 94.3
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 8.2e-86 320.5 175 94.3
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 1.8e-85 319.3 175 93.7
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 7.7e-84 313.9 175 91.4
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 6.5e-83 310.8 175 89.7
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 2.5e-82 308.9 175 90.3
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 3.0e-80 302.0 175 86.9
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 5.7e-79 297.7 178 85.4
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 5.3e-77 291.2 169 86.4
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 1.0e-67 260.4 168 79.2
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 4.2e-66 255.0 176 80.1
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 1.8e-64 249.6 136 92.6
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 3.9e-64 248.4 136 92.6
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 6.3e-62 241.1 172 70.9
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 3.5e-52 208.8 175 62.9
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 2.1e-49 199.5 175 60.6
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 2.7e-49 199.1 176 59.1
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 2.7e-49 199.1 177 61.0
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 1.8e-48 196.4 175 59.4
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 1.8e-48 196.4 175 60.0
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 4.0e-48 195.3 175 59.4
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 4.0e-48 195.3 172 61.0
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 4.0e-48 195.3 136 70.6
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 8.8e-48 194.1 173 56.1
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 1.5e-47 193.4 172 59.9
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 7.5e-47 191.0 175 56.0
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 2.2e-46 189.5 175 58.9
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 2.8e-46 189.1 176 59.7
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 3.7e-46 188.7 182 54.9
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 3.7e-46 188.7 175 58.3
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 4.9e-46 188.3 170 57.6
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 1.1e-45 187.2 182 54.4
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 1.8e-45 186.4 178 59.0
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 1.8e-45 186.4 184 56.0
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 1.8e-45 186.4 175 54.9
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 2.4e-45 186.0 174 55.7
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 2.4e-45 186.0 174 55.7
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 5.4e-45 184.9 173 57.2
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 5.4e-45 184.9 176 56.8
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 5.4e-45 184.9 169 56.8
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 7.0e-45 184.5 173 56.6
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 9.1e-45 184.1 173 56.1
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 4.5e-44 181.8 173 56.6
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 1.0e-43 180.6 174 56.9
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 1.3e-43 180.3 173 57.2
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 3.8e-43 178.7 176 55.7
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 5.0e-43 178.3 175 60.0
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 8.6e-43 177.6 173 55.5
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.9e-42 176.4 166 56.6
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 4.2e-42 175.3 175 53.1
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 5.6e-42 174.9 181 53.0
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.2e-41 173.7 177 55.4
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 2.8e-41 172.6 177 55.9
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 2.8e-41 172.6 162 55.6
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 1.0e-40 170.6 187 50.3
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 1.8e-40 169.9 171 54.4
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 1.8e-40 169.9 178 52.2
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 3.0e-40 169.1 187 49.7
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 5.2e-40 168.3 177 52.5
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 8.9e-40 167.5 175 51.4
C03p81600 Brassica napus HOM05D004876 ORTHO05D005488 8.9e-40 167.5 106 81.1
BolC3t20430H Brassica oleracea HOM05D004876 ORTHO05D005488 8.9e-40 167.5 106 81.1
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 8.9e-40 167.5 170 52.4
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 1.5e-39 166.8 175 53.1
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 5.7e-39 164.9 185 50.8
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 9.8e-39 164.1 179 51.4
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 1.3e-38 163.7 175 51.4
C01p26050 Brassica napus HOM05D004876 ORTHO05D005488 3.7e-38 162.2 98 84.7
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 4.1e-37 158.7 173 49.7
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 1.6e-36 156.8 173 51.4
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 2.7e-36 156.0 180 48.9
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 4.6e-36 155.2 181 49.7
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 4.6e-36 155.2 181 49.7
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 7.8e-36 154.5 173 49.1
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 7.8e-36 154.5 175 48.0
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 3.9e-35 152.1 175 50.3
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 8.6e-35 151.0 181 48.1
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 1.5e-34 150.2 173 49.1
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.5e-34 150.2 175 49.1
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 2.5e-34 149.4 175 47.4
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 4.3e-34 148.7 119 61.3
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 4.3e-34 148.7 240 40.0
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 4.3e-34 148.7 180 47.2
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 5.6e-34 148.3 168 47.6
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 2.1e-33 146.4 172 47.7
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 2.1e-33 146.4 172 47.1
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 2.8e-33 146.0 172 51.7
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 4.7e-33 145.2 163 44.2
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 1.0e-32 144.1 104 68.3
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 1.4e-32 143.7 169 50.9
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 1.8e-32 143.3 127 56.7
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 2.3e-32 142.9 157 49.7
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 3.1e-32 142.5 179 44.7
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 3.1e-32 142.5 112 65.2
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 5.2e-32 141.7 172 47.1
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 5.2e-32 141.7 175 48.0
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 5.2e-32 141.7 175 45.1
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 6.8e-32 141.4 177 46.3
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 6.8e-32 141.4 190 45.3
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 8.9e-32 141.0 162 50.0
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 1.5e-31 140.2 151 51.0
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 1.5e-31 140.2 146 50.7
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 2.0e-31 139.8 137 52.6
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 3.4e-31 139.0 165 49.7
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 4.4e-31 138.7 177 44.1
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 1.3e-30 137.1 182 44.5
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 2.2e-30 136.3 175 44.0
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 2.9e-30 136.0 175 46.9
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 6.4e-30 134.8 182 45.1
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 1.9e-29 133.3 174 44.3
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 1.9e-29 133.3 172 43.6
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 4.1e-29 132.1 159 47.8
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 7.0e-29 131.3 176 42.0
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 4.6e-28 128.6 158 46.8
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 7.8e-28 127.9 177 44.1
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 2.3e-27 126.3 176 41.5
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 8.6e-27 124.4 111 56.8
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 1.5e-26 123.6 106 57.5
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 3.3e-26 122.5 178 41.6
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 6.2e-25 118.2 186 40.3
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 1.4e-24 117.1 106 55.7
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 6.8e-24 114.8 81 69.1
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 8.9e-24 114.4 165 44.8
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.5e-23 113.6 175 43.4
AL4G14440 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 8.3e-22 107.8 62 85.5
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 1.2e-20 104.0 167 35.3
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 7.8e-20 101.3 136 43.4
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 2.3e-19 99.8 106 46.2
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 8.6e-19 97.8 106 45.3
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 2.5e-18 96.3 75 62.7
BcaC09g50389 Brassica carinata HOM05D015100 ORTHO05D005488 4.3e-18 95.5 64 81.2
BolC9t55552H Brassica oleracea HOM05D015100 ORTHO05D005488 7.3e-18 94.7 66 78.8
BolC9t53790H Brassica oleracea HOM05D015100 ORTHO05D005488 1.2e-17 94.0 64 79.7
BolC1t01821H Brassica oleracea HOM05D015100 ORTHO05D005488 1.6e-17 93.6 66 78.8
BolC1t02550H Brassica oleracea HOM05D015100 ORTHO05D005488 1.6e-17 93.6 64 79.7
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 5.2e-16 88.6 108 50.9
BraA05t19187Z Brassica rapa HOM05D015100 ORTHO05D005488 1.3e-14 84.0 101 50.5
HanXRQChr07g0204961 Helianthus annuus HOM05D004876 ORTHO05D005488 3.7e-14 82.4 111 43.2
Thhalv10016561m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 3.2e-13 79.3 59 72.9
BraA03t11517Z Brassica rapa HOM05D000171 ORTHO05D000101 1.5e-10 70.5 39 89.7
C03p27210 Brassica napus HOM05D015100 ORTHO05D031876 3.3e-10 69.3 69 63.8
BolC3t15102H Brassica oleracea HOM05D015100 ORTHO05D031876 3.3e-10 69.3 69 63.8
Cre03.g155800 Chlamydomonas reinhardtii HOM05D004876 ORTHO05D005488 5.6e-10 68.6 94 38.3
MCO11G196 Micromonas commoda HOM05D004876 ORTHO05D005488 7.3e-10 68.2 120 32.5
BcaC01g05378 Brassica carinata HOM05D015100 ORTHO05D031876 9.6e-10 67.8 71 60.6
AT2G40910 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 2.8e-09 66.2 54 64.8
Carub.0004s2322 Capsella rubella HOM05D000171 ORTHO05D000101 8.9e-08 61.2 59 59.3
AL4G38850 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 3.4e-07 59.3 56 64.3
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 5.8e-07 58.5 140 32.1
C03p27370 Brassica napus HOM05D000171 ORTHO05D000101 4.9e-06 55.5 58 53.4
BolC3t15117H Brassica oleracea HOM05D000171 ORTHO05D000101 4.9e-06 55.5 58 53.4


User provided reference genes

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