Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29161 Brassica carinata HOM05D003400 ORTHO05D003687 1.3e-81 307.0 158 100.0
C04p68450 Brassica napus HOM05D003400 ORTHO05D003687 4.3e-45 185.7 171 62.6
BcaB06g29158 Brassica carinata HOM05D003400 ORTHO05D003687 9.5e-45 184.5 186 61.3
BcaC02g07326 Brassica carinata HOM05D003400 ORTHO05D003687 3.6e-44 182.6 174 61.5
BolC4t28345H Brassica oleracea HOM05D003400 ORTHO05D003687 2.3e-43 179.9 174 60.3
BraA04t18562Z Brassica rapa HOM05D003400 ORTHO05D003687 4.9e-41 172.2 173 60.1
A04p31060 Brassica napus HOM05D003400 ORTHO05D003687 1.2e-39 167.5 177 58.2
BcaC01g05391 Brassica carinata HOM05D003400 ORTHO05D003687 1.2e-34 151.0 199 50.8
A03p22840 Brassica napus HOM05D003400 ORTHO05D003687 1.5e-34 150.6 199 50.8
Sp4g22960 Schrenkiella parvula HOM05D003400 ORTHO05D003687 2.0e-34 150.2 202 50.5
C03p27090 Brassica napus HOM05D003400 ORTHO05D003687 2.6e-34 149.8 199 50.8
BcaB01g03526 Brassica carinata HOM05D003400 ORTHO05D003687 1.3e-33 147.5 209 48.3
AT2G40630 Arabidopsis thaliana HOM05D003400 ORTHO05D003687 3.7e-33 146.0 200 50.5
AL4G38500 Arabidopsis lyrata HOM05D003400 ORTHO05D003687 1.4e-32 144.1 189 50.8
Carub.0004s2292 Capsella rubella HOM05D003400 ORTHO05D003687 1.4e-32 144.1 209 49.8
BraA03t11508Z Brassica rapa HOM05D003400 ORTHO05D003687 1.6e-31 140.6 175 53.1
Thhalv10016481m.g Eutrema salsugineum HOM05D003400 ORTHO05D003687 2.7e-31 139.8 198 48.5
CARHR135740 Cardamine hirsuta HOM05D003400 ORTHO05D003687 1.9e-29 133.7 207 48.8
Aa31LG3G1490 Aethionema arabicum HOM05D003400 ORTHO05D003687 2.5e-29 133.3 200 46.5
THA.LOC104813796 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 1.5e-18 97.4 168 42.3
THA.LOC104816509 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 3.0e-14 83.2 159 36.5
Actinidia13648 Actinidia chinensis HOM05D003400 ORTHO05D003687 1.1e-13 81.3 178 34.3
CANSAT21G0473 Cannabis sativa HOM05D003400 ORTHO05D003687 1.1e-13 81.3 181 33.1
CANSAT21G1871 Cannabis sativa HOM05D003400 ORTHO05D003687 1.5e-13 80.9 179 33.0
Ciclev10030981m.g Citrus clementina HOM05D003400 ORTHO05D003687 1.5e-13 80.9 188 33.5
Manes.07G143400 Manihot esculenta HOM05D003400 ORTHO05D003687 1.9e-13 80.5 195 32.8
PGR044G0713 Punica granatum HOM05D003400 ORTHO05D003687 3.3e-13 79.7 178 34.3
CDE04G0272 Ceratophyllum demersum HOM05D003400 ORTHO05D003687 4.3e-13 79.3 168 34.5
TWI09G1099 Tripterygium wilfordii HOM05D003400 ORTHO05D003687 4.3e-13 79.3 181 34.3
TAR369G0853 Trochodendron aralioides HOM05D003400 ORTHO05D003687 4.3e-13 79.3 176 33.5
COL.COLO4_19367 Corchorus olitorius HOM05D003400 ORTHO05D003687 5.6e-13 79.0 194 32.0
THA.LOC104823169 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 7.3e-13 78.6 191 32.5
Sp6g37590 Schrenkiella parvula HOM05D003400 ORTHO05D003687 9.6e-13 78.2 191 31.9
Thecc.10G181000 Theobroma cacao HOM05D003400 ORTHO05D003687 9.6e-13 78.2 198 33.3
Actinidia07793 Actinidia chinensis HOM05D003400 ORTHO05D003687 1.3e-12 77.8 191 33.0
Peaxi162Scf00739g00321 Petunia axillaris HOM05D003400 ORTHO05D003687 1.3e-12 77.8 190 32.6
Psat6g036400 Pisum sativum HOM05D003400 ORTHO05D003687 1.3e-12 77.8 177 33.9
Duzib114G0186 Durio zibethinus HOM05D003400 ORTHO05D003687 1.6e-12 77.4 182 33.5
Ca_03351_v3 Cicer arietinum L. HOM05D003400 ORTHO05D003687 2.1e-12 77.0 172 33.1
TWI53G0017 Tripterygium wilfordii HOM05D003400 ORTHO05D003687 2.1e-12 77.0 181 32.6
BcaB05g21725 Brassica carinata HOM05D003400 ORTHO05D003687 2.8e-12 76.6 186 32.8
Dinv21846 Davidia involucrata HOM05D003400 ORTHO05D003687 2.8e-12 76.6 199 30.2
vmacro06891 Vaccinium macrocarpon HOM05D003400 ORTHO05D003687 2.8e-12 76.6 177 33.3
Actinidia31626 Actinidia chinensis HOM05D003400 ORTHO05D003687 4.8e-12 75.9 173 33.5
MSTRG.171 Avicennia marina HOM05D003400 ORTHO05D003687 4.8e-12 75.9 172 35.5
Aqoxy4G02422 Aquilegia oxysepala HOM05D003400 ORTHO05D003687 6.2e-12 75.5 169 32.5
Migut.F00607 Erythranthe guttata HOM05D003400 ORTHO05D003687 8.1e-12 75.1 148 35.8
Eucgr.J00113 Eucalyptus grandis HOM05D003400 ORTHO05D003687 8.1e-12 75.1 162 35.2
Sabra19G0073600 Salix brachista HOM05D003400 ORTHO05D003687 8.1e-12 75.1 167 34.7
ClCG07G005110 Citrullus lanatus HOM05D003400 ORTHO05D003687 1.1e-11 74.7 168 34.5
Thhalv10013224m.g Eutrema salsugineum HOM05D003400 ORTHO05D003687 1.1e-11 74.7 168 34.5
Hma1.2p1_0264F.1_g106160 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 1.1e-11 74.7 195 31.3
CAN.G24.15 Capsicum annuum HOM05D003400 ORTHO05D003687 1.4e-11 74.3 188 32.4
HanXRQChr09g0252221 Helianthus annuus HOM05D003400 ORTHO05D003687 1.4e-11 74.3 162 37.0
Atru.chr12.183 Acer truncatum HOM05D003400 ORTHO05D003687 1.8e-11 73.9 177 33.3
Aa31LG11G6090 Aethionema arabicum HOM05D003400 ORTHO05D003687 1.8e-11 73.9 191 30.9
BolC2t06192H Brassica oleracea HOM05D003400 ORTHO05D003687 1.8e-11 73.9 191 31.9
Lsat_1_v5_gn_8_11440 Lactuca sativa HOM05D003400 ORTHO05D003687 1.8e-11 73.9 154 33.1
MBI03_g15591_MAGBIO Magnolia biondii HOM05D003400 ORTHO05D003687 1.8e-11 73.9 178 33.7
Potri.019G058200 Populus trichocarpa HOM05D003400 ORTHO05D003687 1.8e-11 73.9 167 34.1
Prupe.2G264100 Prunus persica HOM05D003400 ORTHO05D003687 2.4e-11 73.6 198 32.8
TAR623G0519 Trochodendron aralioides HOM05D003400 ORTHO05D003687 2.4e-11 73.6 175 33.7
BcaC06g32233 Brassica carinata HOM05D003400 ORTHO05D003687 3.1e-11 73.2 188 30.9
A10p30950 Brassica napus HOM05D003400 ORTHO05D003687 3.1e-11 73.2 188 30.9
BolC9t59909H Brassica oleracea HOM05D003400 ORTHO05D003687 3.1e-11 73.2 188 30.9
BraA10t45140Z Brassica rapa HOM05D003400 ORTHO05D003687 3.1e-11 73.2 188 30.9
Cc02_g05370 Coffea canephora HOM05D003400 ORTHO05D003687 3.1e-11 73.2 186 32.8
Duzib106G2049 Durio zibethinus HOM05D003400 ORTHO05D003687 3.1e-11 73.2 181 33.1
Migut.F01244 Erythranthe guttata HOM05D003400 ORTHO05D003687 3.1e-11 73.2 159 34.6
Nn5g26847 Nelumbo nucifera HOM05D003400 ORTHO05D003687 3.1e-11 73.2 182 33.0
Solyc06g048970.3 Solanum lycopersicum HOM05D003400 ORTHO05D003687 3.1e-11 73.2 190 32.1
TAR633G0453 Trochodendron aralioides HOM05D003400 ORTHO05D003687 3.1e-11 73.2 177 31.1
CsaV3_5G010950 Cucumis sativus L. HOM05D003400 ORTHO05D003687 4.0e-11 72.8 168 34.5
Lalb_Chr24g0402681 Lupinus albus HOM05D003400 ORTHO05D003687 4.0e-11 72.8 175 33.1
Manes.10G001400 Manihot esculenta HOM05D003400 ORTHO05D003687 4.0e-11 72.8 177 31.6
Sed0002948 Sechium edule HOM05D003400 ORTHO05D003687 4.0e-11 72.8 197 31.0
Sopen06g015320 Solanum pennellii HOM05D003400 ORTHO05D003687 4.0e-11 72.8 190 32.1
PGSC0003DMG400016640 Solanum tuberosum HOM05D003400 ORTHO05D003687 4.0e-11 72.8 190 32.1
BcaC03g13153 Brassica carinata HOM05D003400 ORTHO05D003687 5.3e-11 72.4 190 31.6
MELO3C020148.2 Cucumis melo HOM05D003400 ORTHO05D003687 5.3e-11 72.4 168 34.5
PSO170G4360 Papaver somniferum HOM05D003400 ORTHO05D003687 5.3e-11 72.4 174 32.2
TPR.G24491 Trifolium pratense HOM05D003400 ORTHO05D003687 5.3e-11 72.4 180 31.7
GSVIVG01032673001 Vitis vinifera HOM05D003400 ORTHO05D003687 5.3e-11 72.4 196 32.1
Rhsim09G0185900 Rhododendron simsii HOM05D003400 ORTHO05D003687 6.9e-11 72.0 169 35.5
Zm00001eb231310 Zea mays HOM05D003400 ORTHO05D003687 6.9e-11 72.0 177 32.8
Glyma.17G191500 Glycine max HOM05D003400 ORTHO05D003687 9.0e-11 71.6 175 32.6
Nitab4.5_0000171g0020 Nicotiana tabacum HOM05D003400 ORTHO05D003687 9.0e-11 71.6 200 30.0
Nitab4.5_0002745g0010 Nicotiana tabacum HOM05D003400 ORTHO05D003687 9.0e-11 71.6 200 30.0
PSO017G2438 Papaver somniferum HOM05D003400 ORTHO05D003687 9.0e-11 71.6 159 33.3
Actinidia01001 Actinidia chinensis HOM05D003400 ORTHO05D003687 1.2e-10 71.2 202 29.7
C02p02230 Brassica napus HOM05D003400 ORTHO05D003687 1.2e-10 71.2 190 31.1
Gohir.A05G403000 Gossypium hirsutum HOM05D003400 ORTHO05D003687 1.2e-10 71.2 194 30.9
Gorai.012G014800 Gossypium raimondii HOM05D003400 ORTHO05D003687 1.2e-10 71.2 193 30.6
Gohir.D04G012500 Gossypium hirsutum HOM05D003400 ORTHO05D003687 1.5e-10 70.9 193 30.6
Lj1g0015659 Lotus japonicus HOM05D003400 ORTHO05D003687 1.5e-10 70.9 177 31.6
VMungo0647G2516 Vigna mungo HOM05D003400 ORTHO05D003687 1.5e-10 70.9 176 31.2
BraA02t04839Z Brassica rapa HOM05D003400 ORTHO05D003687 2.0e-10 70.5 194 30.4
FAN03G2499 Fragaria x ananassa HOM05D003400 ORTHO05D003687 2.0e-10 70.5 182 32.4
FAN10G0615 Fragaria x ananassa HOM05D003400 ORTHO05D003687 2.0e-10 70.5 182 32.4
Oeu063984.1 Olea europaea HOM05D003400 ORTHO05D003687 2.0e-10 70.5 201 32.8
AT5G05240 Arabidopsis thaliana HOM05D003400 ORTHO05D003687 2.6e-10 70.1 188 31.9
Gorai.009G293800 Gossypium raimondii HOM05D003400 ORTHO05D003687 2.6e-10 70.1 186 32.3
Lj1C967G2 Lonicera japonica HOM05D003400 ORTHO05D003687 2.6e-10 70.1 170 32.9
MD07G1233700 Malus domestica HOM05D003400 ORTHO05D003687 2.6e-10 70.1 195 32.3
Nn2g10302 Nelumbo nucifera HOM05D003400 ORTHO05D003687 2.6e-10 70.1 175 31.4
Os02g0132200 Oryza sativa ssp. japonica HOM05D003400 ORTHO05D003687 2.6e-10 70.1 171 31.6
RcHm_v2.0_Chr1g0372301 Rosa chinensis HOM05D003400 ORTHO05D003687 2.6e-10 70.1 208 30.8
SGA_v2.0_scaffold60G20888 Striga asiatica HOM05D003400 ORTHO05D003687 2.6e-10 70.1 162 33.3
Glyma.14G117500 Glycine max HOM05D003400 ORTHO05D003687 3.4e-10 69.7 176 32.4
Medtr1g007460 Medicago truncatula HOM05D003400 ORTHO05D003687 3.4e-10 69.7 177 31.6
C09p71460 Brassica napus HOM05D003400 ORTHO05D003687 4.4e-10 69.3 188 30.3
Carub.0006s0417 Capsella rubella HOM05D003400 ORTHO05D003687 4.4e-10 69.3 187 29.9
Lsat_1_v5_gn_9_60041 Lactuca sativa HOM05D003400 ORTHO05D003687 4.4e-10 69.3 169 33.7
SGA_v2.0_scaffold44G16620 Striga asiatica HOM05D003400 ORTHO05D003687 4.4e-10 69.3 148 35.8
FvH4_7g25930 Fragaria vesca HOM05D003400 ORTHO05D003687 5.8e-10 68.9 182 32.4
Phvul.001G062900 Phaseolus vulgaris HOM05D003400 ORTHO05D003687 5.8e-10 68.9 176 30.7
CiPaw.01G306600 Carya illinoinensis HOM05D003400 ORTHO05D003687 7.6e-10 68.6 189 30.2
Gohir.A05G278600 Gossypium hirsutum HOM05D003400 ORTHO05D003687 7.6e-10 68.6 186 31.7
Gohir.D05G280400 Gossypium hirsutum HOM05D003400 ORTHO05D003687 7.6e-10 68.6 186 32.3
QL08p064852 Quercus lobata HOM05D003400 ORTHO05D003687 7.6e-10 68.6 185 31.9
FAN06G1869 Fragaria x ananassa HOM05D003400 ORTHO05D003687 9.9e-10 68.2 182 32.4
Potri.013G091100 Populus trichocarpa HOM05D003400 ORTHO05D003687 9.9e-10 68.2 166 33.1
Rhsim03G0152500 Rhododendron simsii HOM05D003400 ORTHO05D003687 9.9e-10 68.2 202 29.2
CARHR207990 Cardamine hirsuta HOM05D003400 ORTHO05D003687 1.3e-09 67.8 168 32.7
FAN01G0709 Fragaria x ananassa HOM05D003400 ORTHO05D003687 1.3e-09 67.8 182 31.9
HanXRQChr08g0221571 Helianthus annuus HOM05D003400 ORTHO05D003687 1.7e-09 67.4 192 29.2
MSTRG.8889 Avicennia marina HOM05D003400 ORTHO05D003687 2.2e-09 67.0 172 34.3
CSS0037757 Camellia sinensis var. sinensis HOM05D003400 ORTHO05D003687 2.2e-09 67.0 180 32.8
MD01G1167700 Malus domestica HOM05D003400 ORTHO05D003687 2.9e-09 66.6 187 29.4
vmacro09957 Vaccinium macrocarpon HOM05D003400 ORTHO05D003687 3.8e-09 66.2 177 31.6
PSO384G0897 Papaver somniferum HOM05D003400 ORTHO05D003687 4.9e-09 65.9 167 30.5
SalBow3G2848 Salvia bowleyana HOM05D003400 ORTHO05D003687 6.4e-09 65.5 188 31.4
TAR636G2149 Trochodendron aralioides HOM05D003400 ORTHO05D003687 8.4e-09 65.1 165 31.5
EL10Ac2g02645 Beta vulgaris HOM05D003400 ORTHO05D003687 2.4e-08 63.5 175 29.1
AUR62024934 Chenopodium quinoa HOM05D003400 ORTHO05D003687 2.4e-08 63.5 175 29.1
AUR62030610 Chenopodium quinoa HOM05D003400 ORTHO05D003687 2.4e-08 63.5 175 29.1
ECA232G0413 Erigeron canadensis HOM05D003400 ORTHO05D003687 2.4e-08 63.5 171 31.0
Hma1.2p1_0292F.1_g115970 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 2.4e-08 63.5 199 29.1
PSO339G6613 Papaver somniferum HOM05D003400 ORTHO05D003687 2.4e-08 63.5 167 29.9
Lalb_Chr22g0360931 Lupinus albus HOM05D003400 ORTHO05D003687 3.2e-08 63.2 169 32.0
DCAR_020152 Daucus carota HOM05D003400 ORTHO05D003687 4.2e-08 62.8 170 31.2
MBI15_g01598_MAGBIO Magnolia biondii HOM05D003400 ORTHO05D003687 5.4e-08 62.4 169 32.5
ECA233G0468 Erigeron canadensis HOM05D003400 ORTHO05D003687 7.1e-08 62.0 189 29.6
Manes.07G141701 Manihot esculenta HOM05D003400 ORTHO05D003687 9.3e-08 61.6 145 31.7
DCAR_018037 Daucus carota HOM05D003400 ORTHO05D003687 1.2e-07 61.2 175 30.9
AL6G15080 Arabidopsis lyrata HOM05D003400 ORTHO05D003687 1.6e-07 60.8 157 31.2
DCAR_029743 Daucus carota HOM05D000792 ORTHO05D004195 2.7e-07 60.1 180 30.0
Haze_17357 Corylus avellana HOM05D003400 ORTHO05D003687 4.6e-07 59.3 202 28.2
HPP92_024977 Vanilla planifolia HOM05D003400 ORTHO05D003687 4.6e-07 59.3 141 33.3
Aqoxy2G00693 Aquilegia oxysepala HOM05D003400 ORTHO05D003687 1.3e-06 57.8 165 27.3
Hund15817 Selenicereus undatus HOM05D003400 ORTHO05D003687 2.3e-06 57.0 175 28.0


User provided reference genes

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