Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29158 Brassica carinata HOM05D003400 ORTHO05D003687 9.6e-145 516.9 281 100.0
BcaC02g07326 Brassica carinata HOM05D003400 ORTHO05D003687 1.0e-90 337.4 282 68.8
BolC4t28345H Brassica oleracea HOM05D003400 ORTHO05D003687 6.7e-90 334.7 282 68.1
BraA04t18562Z Brassica rapa HOM05D003400 ORTHO05D003687 5.7e-89 331.6 277 68.6
A04p31060 Brassica napus HOM05D003400 ORTHO05D003687 8.2e-88 327.8 286 68.2
C04p68450 Brassica napus HOM05D003400 ORTHO05D003687 1.6e-86 323.6 277 72.2
Sp4g22960 Schrenkiella parvula HOM05D003400 ORTHO05D003687 1.4e-79 300.4 326 58.6
A03p22840 Brassica napus HOM05D003400 ORTHO05D003687 5.3e-79 298.5 322 57.8
BcaC01g05391 Brassica carinata HOM05D003400 ORTHO05D003687 2.0e-78 296.6 322 57.8
C03p27090 Brassica napus HOM05D003400 ORTHO05D003687 2.0e-78 296.6 322 57.8
BcaB01g03526 Brassica carinata HOM05D003400 ORTHO05D003687 1.9e-76 290.0 328 57.6
Carub.0004s2292 Capsella rubella HOM05D003400 ORTHO05D003687 2.5e-76 289.7 332 55.1
AL4G38500 Arabidopsis lyrata HOM05D003400 ORTHO05D003687 2.1e-75 286.6 331 55.9
Thhalv10016481m.g Eutrema salsugineum HOM05D003400 ORTHO05D003687 3.6e-75 285.8 329 55.6
AT2G40630 Arabidopsis thaliana HOM05D003400 ORTHO05D003687 4.7e-75 285.4 331 53.8
BraA03t11508Z Brassica rapa HOM05D003400 ORTHO05D003687 2.8e-67 259.6 321 52.3
Aa31LG3G1490 Aethionema arabicum HOM05D003400 ORTHO05D003687 1.0e-58 231.1 360 45.0
CARHR135740 Cardamine hirsuta HOM05D003400 ORTHO05D003687 4.4e-49 199.1 209 58.4
BcaB06g29161 Brassica carinata HOM05D003400 ORTHO05D003687 9.5e-44 181.4 186 61.3
THA.LOC104813796 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 1.4e-39 167.5 350 38.6
Lsat_1_v5_gn_8_11440 Lactuca sativa HOM05D003400 ORTHO05D003687 7.8e-38 161.8 301 37.5
Manes.07G143400 Manihot esculenta HOM05D003400 ORTHO05D003687 9.5e-36 154.8 383 32.6
GSVIVG01032673001 Vitis vinifera HOM05D003400 ORTHO05D003687 1.6e-35 154.1 366 34.4
COL.COLO4_19367 Corchorus olitorius HOM05D003400 ORTHO05D003687 6.2e-35 152.1 401 32.7
HanXRQChr08g0221571 Helianthus annuus HOM05D003400 ORTHO05D003687 8.1e-35 151.8 323 34.1
Rhsim09G0185900 Rhododendron simsii HOM05D003400 ORTHO05D003687 1.8e-34 150.6 353 33.4
vmacro09957 Vaccinium macrocarpon HOM05D003400 ORTHO05D003687 1.8e-34 150.6 351 33.6
Lj1C967G2 Lonicera japonica HOM05D003400 ORTHO05D003687 3.1e-34 149.8 343 32.9
Peaxi162Scf00739g00321 Petunia axillaris HOM05D003400 ORTHO05D003687 3.1e-34 149.8 396 31.1
Thecc.10G181000 Theobroma cacao HOM05D003400 ORTHO05D003687 4.0e-34 149.4 396 32.1
C02p02230 Brassica napus HOM05D003400 ORTHO05D003687 5.2e-34 149.1 327 34.9
Hma1.2p1_0264F.1_g106160 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 5.2e-34 149.1 384 32.6
Actinidia07793 Actinidia chinensis HOM05D003400 ORTHO05D003687 1.5e-33 147.5 361 32.7
BcaC03g13153 Brassica carinata HOM05D003400 ORTHO05D003687 2.6e-33 146.7 331 35.0
ECA232G0413 Erigeron canadensis HOM05D003400 ORTHO05D003687 2.6e-33 146.7 350 33.1
ECA233G0468 Erigeron canadensis HOM05D003400 ORTHO05D003687 2.6e-33 146.7 316 33.5
DCAR_020152 Daucus carota HOM05D003400 ORTHO05D003687 7.6e-33 145.2 296 35.5
BolC2t06192H Brassica oleracea HOM05D003400 ORTHO05D003687 9.9e-33 144.8 338 34.0
BcaB05g21725 Brassica carinata HOM05D003400 ORTHO05D003687 1.3e-32 144.4 348 33.0
Lsat_1_v5_gn_9_60041 Lactuca sativa HOM05D003400 ORTHO05D003687 1.7e-32 144.1 329 34.3
Nitab4.5_0002745g0010 Nicotiana tabacum HOM05D003400 ORTHO05D003687 1.7e-32 144.1 388 32.7
Actinidia31626 Actinidia chinensis HOM05D003400 ORTHO05D003687 2.2e-32 143.7 378 32.0
Duzib114G0186 Durio zibethinus HOM05D003400 ORTHO05D003687 2.2e-32 143.7 418 31.6
Gohir.D05G280400 Gossypium hirsutum HOM05D003400 ORTHO05D003687 2.2e-32 143.7 369 32.5
PGR044G0713 Punica granatum HOM05D003400 ORTHO05D003687 2.9e-32 143.3 374 32.9
TWI09G1099 Tripterygium wilfordii HOM05D003400 ORTHO05D003687 6.4e-32 142.1 395 31.1
PGSC0003DMG400016640 Solanum tuberosum HOM05D003400 ORTHO05D003687 8.4e-32 141.7 400 31.2
Manes.10G001400 Manihot esculenta HOM05D003400 ORTHO05D003687 2.4e-31 140.2 391 30.4
Solyc06g048970.3 Solanum lycopersicum HOM05D003400 ORTHO05D003687 2.4e-31 140.2 400 31.0
Sopen06g015320 Solanum pennellii HOM05D003400 ORTHO05D003687 2.4e-31 140.2 400 31.0
Zm00001eb231310 Zea mays HOM05D003400 ORTHO05D003687 2.4e-31 140.2 356 32.0
CAN.G24.15 Capsicum annuum HOM05D003400 ORTHO05D003687 3.2e-31 139.8 390 30.8
QL08p064852 Quercus lobata HOM05D003400 ORTHO05D003687 4.1e-31 139.4 383 31.6
Nitab4.5_0000171g0020 Nicotiana tabacum HOM05D003400 ORTHO05D003687 5.4e-31 139.0 390 32.3
Prupe.2G264100 Prunus persica HOM05D003400 ORTHO05D003687 5.4e-31 139.0 387 30.5
Actinidia13648 Actinidia chinensis HOM05D003400 ORTHO05D003687 7.1e-31 138.7 387 31.8
BraA02t04839Z Brassica rapa HOM05D003400 ORTHO05D003687 7.1e-31 138.7 342 33.6
MBI03_g15591_MAGBIO Magnolia biondii HOM05D003400 ORTHO05D003687 7.1e-31 138.7 344 32.8
Manes.07G141701 Manihot esculenta HOM05D003400 ORTHO05D003687 7.1e-31 138.7 327 32.4
Os02g0132200 Oryza sativa ssp. japonica HOM05D003400 ORTHO05D003687 9.2e-31 138.3 352 31.5
Aa31LG11G6090 Aethionema arabicum HOM05D003400 ORTHO05D003687 1.2e-30 137.9 362 32.9
Eucgr.J00113 Eucalyptus grandis HOM05D003400 ORTHO05D003687 1.2e-30 137.9 394 30.5
Thhalv10013224m.g Eutrema salsugineum HOM05D003400 ORTHO05D003687 1.6e-30 137.5 361 31.6
Gorai.009G293800 Gossypium raimondii HOM05D003400 ORTHO05D003687 1.6e-30 137.5 384 31.5
Atru.chr12.183 Acer truncatum HOM05D003400 ORTHO05D003687 2.1e-30 137.1 380 29.7
Aqoxy4G02422 Aquilegia oxysepala HOM05D003400 ORTHO05D003687 2.7e-30 136.7 366 30.3
Sed0002948 Sechium edule HOM05D003400 ORTHO05D003687 2.7e-30 136.7 393 29.8
Gohir.A05G403000 Gossypium hirsutum HOM05D003400 ORTHO05D003687 4.6e-30 136.0 409 29.6
BcaC06g32233 Brassica carinata HOM05D003400 ORTHO05D003687 6.0e-30 135.6 362 30.1
A10p30950 Brassica napus HOM05D003400 ORTHO05D003687 6.0e-30 135.6 356 29.8
BraA10t45140Z Brassica rapa HOM05D003400 ORTHO05D003687 6.0e-30 135.6 356 29.8
BolC9t59909H Brassica oleracea HOM05D003400 ORTHO05D003687 7.8e-30 135.2 355 29.6
Potri.013G091100 Populus trichocarpa HOM05D003400 ORTHO05D003687 1.0e-29 134.8 316 36.4
DCAR_018037 Daucus carota HOM05D003400 ORTHO05D003687 1.3e-29 134.4 352 32.4
DCAR_029743 Daucus carota HOM05D000792 ORTHO05D004195 1.3e-29 134.4 346 29.8
Gorai.012G014800 Gossypium raimondii HOM05D003400 ORTHO05D003687 1.7e-29 134.0 409 29.1
Sabra19G0073600 Salix brachista HOM05D003400 ORTHO05D003687 1.7e-29 134.0 380 30.5
Ciclev10030981m.g Citrus clementina HOM05D003400 ORTHO05D003687 2.3e-29 133.7 405 29.9
Cc02_g05370 Coffea canephora HOM05D003400 ORTHO05D003687 2.3e-29 133.7 399 29.6
Hma1.2p1_0292F.1_g115970 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 2.3e-29 133.7 366 31.7
Lalb_Chr22g0360931 Lupinus albus HOM05D003400 ORTHO05D003687 2.3e-29 133.7 392 27.8
CANSAT21G1871 Cannabis sativa HOM05D003400 ORTHO05D003687 3.0e-29 133.3 370 29.5
MELO3C020148.2 Cucumis melo HOM05D003400 ORTHO05D003687 3.0e-29 133.3 394 31.7
THA.LOC104823169 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 3.0e-29 133.3 381 30.2
Sp6g37590 Schrenkiella parvula HOM05D003400 ORTHO05D003687 5.1e-29 132.5 377 29.7
THA.LOC104816509 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 5.1e-29 132.5 376 29.8
CSS0037757 Camellia sinensis var. sinensis HOM05D003400 ORTHO05D003687 6.6e-29 132.1 400 30.0
Lalb_Chr24g0402681 Lupinus albus HOM05D003400 ORTHO05D003687 6.6e-29 132.1 390 29.0
Gohir.D04G012500 Gossypium hirsutum HOM05D003400 ORTHO05D003687 8.7e-29 131.7 410 29.5
C09p71460 Brassica napus HOM05D003400 ORTHO05D003687 1.1e-28 131.3 355 29.3
MD07G1233700 Malus domestica HOM05D003400 ORTHO05D003687 1.1e-28 131.3 372 29.3
Duzib106G2049 Durio zibethinus HOM05D003400 ORTHO05D003687 1.5e-28 131.0 413 30.5
Migut.F01244 Erythranthe guttata HOM05D003400 ORTHO05D003687 1.5e-28 131.0 334 32.0
ClCG07G005110 Citrullus lanatus HOM05D003400 ORTHO05D003687 1.9e-28 130.6 396 30.6
FvH4_7g25930 Fragaria vesca HOM05D003400 ORTHO05D003687 1.9e-28 130.6 418 28.7
Migut.F00607 Erythranthe guttata HOM05D003400 ORTHO05D003687 3.3e-28 129.8 351 29.6
FAN06G1869 Fragaria x ananassa HOM05D003400 ORTHO05D003687 3.3e-28 129.8 418 28.7
Potri.019G058200 Populus trichocarpa HOM05D003400 ORTHO05D003687 3.3e-28 129.8 380 30.3
AUR62030610 Chenopodium quinoa HOM05D003400 ORTHO05D003687 4.3e-28 129.4 395 27.8
Lj1g0015659 Lotus japonicus HOM05D003400 ORTHO05D003687 4.3e-28 129.4 392 29.1
RcHm_v2.0_Chr1g0372301 Rosa chinensis HOM05D003400 ORTHO05D003687 4.3e-28 129.4 417 30.0
FAN03G2499 Fragaria x ananassa HOM05D003400 ORTHO05D003687 5.6e-28 129.0 418 27.8
TWI53G0017 Tripterygium wilfordii HOM05D003400 ORTHO05D003687 5.6e-28 129.0 401 29.4
AUR62024934 Chenopodium quinoa HOM05D003400 ORTHO05D003687 9.6e-28 128.3 396 27.8
FAN01G0709 Fragaria x ananassa HOM05D003400 ORTHO05D003687 9.6e-28 128.3 414 28.5
FAN10G0615 Fragaria x ananassa HOM05D003400 ORTHO05D003687 9.6e-28 128.3 420 28.1
SGA_v2.0_scaffold60G20888 Striga asiatica HOM05D003400 ORTHO05D003687 1.2e-27 127.9 336 31.2
Ca_03351_v3 Cicer arietinum L. HOM05D003400 ORTHO05D003687 1.6e-27 127.5 387 28.4
CsaV3_5G010950 Cucumis sativus L. HOM05D003400 ORTHO05D003687 1.6e-27 127.5 399 29.6
Rhsim03G0152500 Rhododendron simsii HOM05D003400 ORTHO05D003687 1.6e-27 127.5 411 27.3
AT5G05240 Arabidopsis thaliana HOM05D003400 ORTHO05D003687 2.1e-27 127.1 370 28.9
Carub.0006s0417 Capsella rubella HOM05D003400 ORTHO05D003687 2.1e-27 127.1 375 29.1
CiPaw.01G306600 Carya illinoinensis HOM05D003400 ORTHO05D003687 2.1e-27 127.1 392 29.3
Psat6g036400 Pisum sativum HOM05D003400 ORTHO05D003687 2.1e-27 127.1 380 28.7
Hund15817 Selenicereus undatus HOM05D003400 ORTHO05D003687 2.1e-27 127.1 394 28.2
CARHR207990 Cardamine hirsuta HOM05D003400 ORTHO05D003687 2.8e-27 126.7 367 29.4
Gohir.A05G278600 Gossypium hirsutum HOM05D003400 ORTHO05D003687 2.8e-27 126.7 378 31.2
PSO384G0897 Papaver somniferum HOM05D003400 ORTHO05D003687 2.8e-27 126.7 404 27.5
SalBow3G2848 Salvia bowleyana HOM05D003400 ORTHO05D003687 4.7e-27 125.9 404 27.7
EL10Ac2g02645 Beta vulgaris HOM05D003400 ORTHO05D003687 8.1e-27 125.2 396 27.5
Nn2g10302 Nelumbo nucifera HOM05D003400 ORTHO05D003687 8.1e-27 125.2 397 29.2
PSO170G4360 Papaver somniferum HOM05D003400 ORTHO05D003687 2.4e-26 123.6 339 30.1
Phvul.001G062900 Phaseolus vulgaris HOM05D003400 ORTHO05D003687 2.4e-26 123.6 384 28.6
SGA_v2.0_scaffold44G16620 Striga asiatica HOM05D003400 ORTHO05D003687 4.0e-26 122.9 356 30.9
arahy.Tifrunner.gnm1.ann1.JMN63H Arachis hypogaea HOM05D003400 ORTHO05D003687 5.2e-26 122.5 309 32.0
MSTRG.8889 Avicennia marina HOM05D003400 ORTHO05D003687 6.9e-26 122.1 392 28.6
PSO339G6613 Papaver somniferum HOM05D003400 ORTHO05D003687 6.9e-26 122.1 404 27.0
arahy.Tifrunner.gnm1.ann1.45IBUQ Arachis hypogaea HOM05D003400 ORTHO05D003687 9.0e-26 121.7 309 32.0
Dinv21846 Davidia involucrata HOM05D003400 ORTHO05D003687 9.0e-26 121.7 425 28.9
Nn5g26847 Nelumbo nucifera HOM05D003400 ORTHO05D003687 9.0e-26 121.7 397 29.0
Oeu063984.1 Olea europaea HOM05D003400 ORTHO05D003687 1.2e-25 121.3 390 29.0
MD01G1167700 Malus domestica HOM05D003400 ORTHO05D003687 3.4e-25 119.8 388 27.8
MSTRG.171 Avicennia marina HOM05D003400 ORTHO05D003687 4.4e-25 119.4 385 28.3
TPR.G24491 Trifolium pratense HOM05D003400 ORTHO05D003687 4.4e-25 119.4 383 28.5
TAR633G0453 Trochodendron aralioides HOM05D003400 ORTHO05D003687 7.6e-25 118.6 397 28.0
VMungo0647G2516 Vigna mungo HOM05D003400 ORTHO05D003687 9.9e-25 118.2 385 27.8
TAR369G0853 Trochodendron aralioides HOM05D003400 ORTHO05D003687 2.2e-24 117.1 396 29.0
Haze_17357 Corylus avellana HOM05D003400 ORTHO05D003687 2.9e-24 116.7 400 29.5
Glyma.17G191500 Glycine max HOM05D003400 ORTHO05D003687 2.9e-24 116.7 396 27.5
TAR623G0519 Trochodendron aralioides HOM05D003400 ORTHO05D003687 3.8e-24 116.3 400 29.2
MBI15_g01598_MAGBIO Magnolia biondii HOM05D003400 ORTHO05D003687 4.9e-24 115.9 357 30.5
AL6G15080 Arabidopsis lyrata HOM05D003400 ORTHO05D003687 8.4e-24 115.2 375 28.0
CDE04G0272 Ceratophyllum demersum HOM05D003400 ORTHO05D003687 1.1e-23 114.8 372 28.0
Glyma.14G117500 Glycine max HOM05D003400 ORTHO05D003687 3.2e-23 113.2 395 26.6
Medtr1g007460 Medicago truncatula HOM05D003400 ORTHO05D003687 3.2e-23 113.2 384 27.3
Hund13449 Selenicereus undatus HOM05D003400 ORTHO05D003687 5.4e-23 112.5 395 27.8
Lj8C54T21 Lonicera japonica HOM05D003400 ORTHO05D003687 7.1e-23 112.1 300 31.0
PSO017G2438 Papaver somniferum HOM05D003400 ORTHO05D003687 2.1e-22 110.5 375 27.7
EL10Ac3g07235 Beta vulgaris HOM05D003400 ORTHO05D003687 1.0e-21 108.2 423 25.8
vmacro06891 Vaccinium macrocarpon HOM05D003400 ORTHO05D003687 3.0e-21 106.7 385 27.5
Rhsim03G0152100 Rhododendron simsii HOM05D003400 ORTHO05D003687 5.1e-21 105.9 413 26.4
CANSAT21G0473 Cannabis sativa HOM05D003400 ORTHO05D003687 1.5e-20 104.4 217 35.5
Dinv34484 Davidia involucrata HOM05D003400 ORTHO05D003687 3.3e-20 103.2 248 33.5
Ca_12768_v3 Cicer arietinum L. HOM05D003400 ORTHO05D003687 4.3e-20 102.8 278 30.2
Actinidia01001 Actinidia chinensis HOM05D003400 ORTHO05D003687 9.6e-20 101.7 215 37.2
Cpa.g.sc19.58 Carica papaya HOM05D003400 ORTHO05D003687 1.6e-19 100.9 329 28.0
Aqoxy2G00693 Aquilegia oxysepala HOM05D003400 ORTHO05D003687 2.4e-18 97.1 309 26.2
CiPaw.13G063500 Carya illinoinensis HOM05D003400 ORTHO05D003687 3.1e-18 96.7 315 28.3
Sed0014609 Sechium edule HOM05D003400 ORTHO05D003687 4.0e-18 96.3 351 27.9
HanXRQChr09g0252221 Helianthus annuus HOM05D003400 ORTHO05D003687 5.3e-18 95.9 206 38.3
TAR636G2149 Trochodendron aralioides HOM05D003400 ORTHO05D003687 1.3e-16 91.3 168 37.5
HPP92_024977 Vanilla planifolia HOM05D003400 ORTHO05D003687 6.0e-14 82.4 348 26.4
Haze_24472 Corylus avellana HOM05D003400 ORTHO05D003687 8.7e-13 78.6 302 27.5
unitig_37.g12474 Utricularia gibba HOM05D003400 ORTHO05D003687 8.7e-13 78.6 239 28.9
QL01p024561 Quercus lobata HOM05D003400 ORTHO05D003687 3.3e-12 76.6 342 26.0
Sc14g0005640 Simmondsia chinensis HOM05D003400 ORTHO05D003687 5.6e-12 75.9 90 45.6
Zm00001eb209040 Zea mays HOM05D003400 ORTHO05D003687 1.4e-10 71.2 132 38.6
TAR636G0727 Trochodendron aralioides HOM05D003400 ORTHO05D003687 6.9e-10 68.9 109 36.7
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 2.0e-09 67.4 191 30.4
Oeu006054.1 Olea europaea HOM05D003400 ORTHO05D003687 9.9e-09 65.1 221 27.1
Potri.013G157700 Populus trichocarpa HOM05D003400 ORTHO05D003687 1.9e-07 60.8 234 25.6
Duzib128G1678 Durio zibethinus HOM05D003400 ORTHO05D003687 9.3e-07 58.5 120 35.8
HanXRQChr09g0240401 Helianthus annuus HOM05D003400 ORTHO05D003687 9.3e-07 58.5 148 35.8
HanXRQChr09g0253941 Helianthus annuus HOM05D003400 ORTHO05D003687 9.3e-07 58.5 148 35.8
BcaC06g32234 Brassica carinata HOM05D003400 ORTHO05D003687 1.2e-06 58.2 126 30.2
FAN03G2881 Fragaria x ananassa HOM05D003400 ORTHO05D003687 2.1e-06 57.4 95 36.8


User provided reference genes

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