Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29152 Brassica carinata HOM05D002451 ORTHO05D007901 0.0e+00 1077.4 526 100.0
BcaC02g07322 Brassica carinata HOM05D002451 ORTHO05D007901 4.1e-298 1027.3 526 95.4
C04p68410 Brassica napus HOM05D002451 ORTHO05D007901 6.1e-294 1013.4 526 94.1
A04p31020 Brassica napus HOM05D002451 ORTHO05D007901 1.5e-292 1008.8 526 93.5
BolC4t28342H Brassica oleracea HOM05D002451 ORTHO05D007901 3.3e-292 1007.7 526 93.0
BraA04t18559Z Brassica rapa HOM05D002451 ORTHO05D007901 2.2e-291 1005.0 526 93.3
Sp4g22900 Schrenkiella parvula HOM05D002451 ORTHO05D007901 7.0e-266 920.2 529 85.8
Thhalv10016464m.g Eutrema salsugineum HOM05D002451 ORTHO05D007901 6.6e-264 913.7 557 82.4
CARHR135670 Cardamine hirsuta HOM05D002451 ORTHO05D007901 2.3e-253 878.6 533 81.6
AT2G40570 Arabidopsis thaliana HOM05D002451 ORTHO05D007901 8.9e-253 876.7 528 81.6
AL4G38420 Arabidopsis lyrata HOM05D002451 ORTHO05D007901 4.6e-249 864.4 517 82.0
Aa31LG3G1530 Aethionema arabicum HOM05D002451 ORTHO05D007901 1.3e-232 809.7 622 66.4
THA.LOC104807537 Tarenaya hassleriana HOM05D002451 ORTHO05D007901 2.9e-211 738.8 527 68.3
Atru.chr7.1460 Acer truncatum HOM05D002451 ORTHO05D007901 1.2e-204 716.8 518 67.8
CiPaw.03G225500 Carya illinoinensis HOM05D002451 ORTHO05D007901 9.3e-202 707.2 514 66.0
Gorai.009G027400 Gossypium raimondii HOM05D002451 ORTHO05D007901 2.1e-201 706.1 518 65.4
GSVIVG01015305001 Vitis vinifera HOM05D002451 ORTHO05D007901 2.1e-201 706.1 516 66.7
CANSAT56G2212 Cannabis sativa HOM05D002451 ORTHO05D007901 5.7e-199 698.0 522 65.3
Duzib168G1562 Durio zibethinus HOM05D002451 ORTHO05D007901 2.2e-198 696.0 520 65.6
FAN23G2627 Fragaria x ananassa HOM05D002451 ORTHO05D007901 2.8e-198 695.7 529 64.7
RcHm_v2.0_Chr2g0091831 Rosa chinensis HOM05D002451 ORTHO05D007901 4.8e-198 694.9 535 64.7
Lalb_Chr05g0223211 Lupinus albus HOM05D002451 ORTHO05D007901 8.2e-198 694.1 508 65.0
FAN28G1338 Fragaria x ananassa HOM05D002451 ORTHO05D007901 1.2e-196 690.3 529 64.8
ClCG11G002150 Citrullus lanatus HOM05D002451 ORTHO05D007901 7.7e-196 687.6 517 64.8
FAN26G3439 Fragaria x ananassa HOM05D002451 ORTHO05D007901 1.0e-195 687.2 529 64.3
vmacro06250 Vaccinium macrocarpon HOM05D002451 ORTHO05D007901 1.3e-195 686.8 516 64.1
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 3.8e-195 685.3 519 64.5
FAN26G0432 Fragaria x ananassa HOM05D002451 ORTHO05D007901 4.2e-194 681.8 529 64.1
MD02G1065300 Malus domestica HOM05D002451 ORTHO05D007901 1.2e-193 680.2 532 64.1
CSS0003026 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D007901 2.1e-193 679.5 515 64.3
Potri.018G087300 Populus trichocarpa HOM05D002451 ORTHO05D007901 3.6e-193 678.7 514 63.4
EL10Ac8g18383 Beta vulgaris HOM05D002451 ORTHO05D007901 1.8e-192 676.4 536 62.9
Psat7g017040 Pisum sativum HOM05D002451 ORTHO05D007901 3.9e-192 675.2 505 65.5
Lj4g0024953 Lotus japonicus HOM05D002451 ORTHO05D007901 6.7e-192 674.5 523 62.5
Medtr8g102540 Medicago truncatula HOM05D002451 ORTHO05D007901 3.3e-191 672.2 508 65.7
Actinidia32654 Actinidia chinensis HOM05D002451 ORTHO05D007901 2.2e-190 669.5 515 63.3
SpUn0061_0010 Schrenkiella parvula HOM05D002451 ORTHO05D007901 2.2e-190 669.5 374 87.7
Hma1.2p1_0571F.1_g180680 Hydrangea macrophylla HOM05D002451 ORTHO05D007901 1.8e-189 666.4 520 62.9
Sc08g0008000 Simmondsia chinensis HOM05D002451 ORTHO05D007901 1.8e-189 666.4 516 62.8
Glyma.05G227000 Glycine max HOM05D002451 ORTHO05D007901 4.1e-189 665.2 525 64.2
CsaV3_2G001930 Cucumis sativus L. HOM05D002451 ORTHO05D007901 6.9e-189 664.5 516 62.4
Rhsim03G0237000 Rhododendron simsii HOM05D002451 ORTHO05D007901 4.5e-188 661.8 526 62.0
arahy.Tifrunner.gnm1.ann1.GUCG30 Arachis hypogaea HOM05D002451 ORTHO05D007901 1.3e-187 660.2 518 63.5
MBI04_g20306_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D007901 6.5e-187 657.9 527 62.6
Aqoxy7G01412 Aquilegia oxysepala HOM05D002451 ORTHO05D007901 4.2e-186 655.2 515 61.6
Eucgr.C00999 Eucalyptus grandis HOM05D002451 ORTHO05D007901 4.2e-186 655.2 515 62.7
MSTRG.10604 Avicennia marina HOM05D002451 ORTHO05D007901 9.4e-186 654.1 513 62.0
Oeu053181.2 Olea europaea HOM05D002451 ORTHO05D007901 1.0e-184 650.6 510 62.7
Nitab4.5_0005668g0020 Nicotiana tabacum HOM05D002451 ORTHO05D007901 7.4e-183 644.4 509 61.5
Sopen12g003400 Solanum pennellii HOM05D002451 ORTHO05D007901 3.7e-182 642.1 515 61.2
Solyc12g008450.2 Solanum lycopersicum HOM05D002451 ORTHO05D007901 8.2e-182 641.0 512 61.5
Lsat_1_v5_gn_7_39761 Lactuca sativa HOM05D002451 ORTHO05D007901 2.4e-181 639.4 503 60.2
Lj7A665T28 Lonicera japonica HOM05D002451 ORTHO05D007901 4.1e-181 638.6 621 53.8
PGSC0003DMG400000298 Solanum tuberosum HOM05D002451 ORTHO05D007901 9.1e-181 637.5 510 61.4
HPP92_009804 Vanilla planifolia HOM05D002451 ORTHO05D007901 1.7e-179 633.3 521 59.7
Dinv36690 Davidia involucrata HOM05D002451 ORTHO05D007901 2.2e-179 632.9 490 63.3
Cc06_g10440 Coffea canephora HOM05D002451 ORTHO05D007901 5.0e-179 631.7 518 59.7
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 1.9e-178 629.8 485 64.3
COL.COLO4_34751 Corchorus olitorius HOM05D002451 ORTHO05D007901 2.1e-177 626.3 511 61.1
MELO3C004587.2 Cucumis melo HOM05D002451 ORTHO05D007901 1.5e-175 620.2 505 59.8
TWI34G1500 Tripterygium wilfordii HOM05D002451 ORTHO05D007901 2.2e-174 616.3 475 65.3
SHI02693 Sapria himalayana HOM05D002451 ORTHO05D007901 1.2e-172 610.5 537 56.2
Ah.14g083250 Amaranthus hybridus HOM05D002451 ORTHO05D007901 4.5e-172 608.6 514 59.1
Sabra18G0075400 Salix brachista HOM05D002451 ORTHO05D007901 2.5e-170 602.8 564 54.6
ATR0705G045 Amborella trichopoda HOM05D002451 ORTHO05D007901 4.2e-170 602.1 549 56.1
Os06g0555500 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D007901 7.2e-170 601.3 527 57.1
Carub.0004s2284 Capsella rubella HOM05D002451 ORTHO05D007901 9.4e-170 600.9 378 79.4
Migut.K00538 Erythranthe guttata HOM05D002451 ORTHO05D007901 6.1e-169 598.2 513 58.7
TPR.G23434 Trifolium pratense HOM05D002451 ORTHO05D007901 6.1e-169 598.2 475 62.9
DCAR_012039 Daucus carota HOM05D002451 ORTHO05D007901 4.4e-167 592.0 469 61.6
AUR62010914 Chenopodium quinoa HOM05D002451 ORTHO05D007901 1.7e-166 590.1 523 58.3
SalBow1G3696 Salvia bowleyana HOM05D002451 ORTHO05D007901 4.8e-166 588.6 532 57.3
SalBow1G8658 Salvia bowleyana HOM05D002451 ORTHO05D007901 2.4e-165 586.3 529 57.5
PGR142G3373 Punica granatum HOM05D002451 ORTHO05D007901 1.0e-163 580.9 461 63.3
PSO063G0860 Papaver somniferum HOM05D002451 ORTHO05D007901 3.2e-162 575.9 471 63.1
VMungo0251G0535 Vigna mungo HOM05D002451 ORTHO05D007901 1.6e-161 573.5 455 63.7
Hund09106 Selenicereus undatus HOM05D002451 ORTHO05D007901 2.1e-161 573.2 614 51.6
Peaxi162Scf00665g00035 Petunia axillaris HOM05D002451 ORTHO05D007901 8.8e-160 567.8 511 56.6
Sed0018496 Sechium edule HOM05D002451 ORTHO05D007901 8.8e-160 567.8 440 62.7
SEGI_00986 Sequoiadendron giganteum HOM05D002451 ORTHO05D007901 1.5e-159 567.0 542 53.7
Prupe.7G220200 Prunus persica HOM05D002451 ORTHO05D007901 7.2e-154 548.1 435 63.2
Manes.16G108300 Manihot esculenta HOM05D002451 ORTHO05D007901 1.2e-153 547.4 437 63.2
FAN19G3003 Fragaria x ananassa HOM05D002451 ORTHO05D007901 1.4e-152 543.9 418 64.4
Ciclev10008594m.g Citrus clementina HOM05D002451 ORTHO05D007901 2.4e-149 533.1 373 68.1
Cfa003184 Carpinus fangiana HOM05D002451 ORTHO05D007901 3.5e-148 529.3 412 63.6
Nn8g39075 Nelumbo nucifera HOM05D002451 ORTHO05D007901 4.6e-148 528.9 449 59.2
Pp3c1_19270 Physcomitrium patens HOM05D002451 ORTHO05D007901 7.3e-146 521.5 572 48.3
Zm00001eb384640 Zea mays HOM05D002451 ORTHO05D007901 7.3e-146 521.5 483 55.1
Hma1.2p1_0571F.1_g180690 Hydrangea macrophylla HOM05D002451 ORTHO05D007901 1.4e-144 517.3 429 60.1
Mapoly0002s0306 Marchantia polymorpha HOM05D002451 ORTHO05D007901 1.8e-144 516.9 567 47.1
FvH4_1g06070 Fragaria vesca HOM05D002451 ORTHO05D007901 1.7e-142 510.4 412 62.4
Gohir.A05G025800 Gossypium hirsutum HOM05D002451 ORTHO05D007901 1.7e-142 510.4 404 62.4
Thecc.09G101000 Theobroma cacao HOM05D002451 ORTHO05D007901 3.2e-141 506.1 405 62.2
AagrBONN_evm.TU.Sc2ySwM_117.4166 Anthoceros agrestis HOM05D002451 ORTHO05D007901 8.6e-139 498.0 515 49.7
SGA_v2.0_scaffold843G53664 Striga asiatica HOM05D002451 ORTHO05D007901 2.1e-137 493.4 435 57.9
CAN.G1241.33 Capsicum annuum HOM05D002451 ORTHO05D007901 9.8e-135 484.6 381 61.7
Phvul.002G309000 Phaseolus vulgaris HOM05D002451 ORTHO05D007901 7.1e-133 478.4 399 59.1
AUR62021412 Chenopodium quinoa HOM05D002451 ORTHO05D007901 1.6e-132 477.2 438 56.8
HanXRQChr09g0238871 Helianthus annuus HOM05D002451 ORTHO05D007901 3.7e-126 456.1 374 57.8
SMO118G0195 Selaginella moellendorffii HOM05D002451 ORTHO05D007901 5.4e-125 452.2 535 45.8
CAN.G1642.1 Capsicum annuum HOM05D002451 ORTHO05D007901 7.1e-117 425.2 425 50.6
CDE08G0666 Ceratophyllum demersum HOM05D002257 ORTHO05D007901 1.1e-112 411.4 365 56.4
TAR636G1745 Trochodendron aralioides HOM05D002451 ORTHO05D007901 1.3e-102 377.9 387 52.7
MD15G1196200 Malus domestica HOM05D002451 ORTHO05D007901 1.4e-101 374.4 515 42.3
SGA_v2.0_scaffold19G08736 Striga asiatica HOM05D002451 ORTHO05D007901 2.1e-97 360.5 270 63.3
Gohir.D05G027300 Gossypium hirsutum HOM05D002451 ORTHO05D007901 2.6e-87 327.0 244 64.8
CBR_g41536 Chara braunii HOM05D002451 ORTHO05D007901 2.6e-79 300.4 515 35.3
ECA240G2417 Erigeron canadensis HOM05D002451 ORTHO05D007901 1.2e-71 275.0 419 40.1
unitig_46.g18399 Utricularia gibba HOM05D002451 ORTHO05D007901 3.9e-67 260.0 259 51.0
MCO03G573 Micromonas commoda HOM05D002451 ORTHO05D007901 1.8e-64 251.1 599 31.2
QL02p041683 Quercus lobata HOM05D002451 ORTHO05D007901 2.1e-60 237.7 154 72.1
SGA_v2.0_scaffold4172G54434 Striga asiatica HOM05D002451 ORTHO05D007901 4.7e-60 236.5 240 51.7
SGA_v2.0_scaffold19G08729 Striga asiatica HOM05D002451 ORTHO05D007901 2.2e-57 227.6 141 71.6
PRCOL_00006066 Prasinoderma coloniale HOM05D000173 ORTHO05D004400 9.8e-50 202.2 553 28.0
CDE02G1621 Ceratophyllum demersum HOM05D002451 ORTHO05D007901 1.0e-46 192.2 151 58.3
Cre06.g272100 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D007901 1.4e-40 171.8 127 59.8
CAN.G4309.1 Capsicum annuum HOM05D002451 ORTHO05D007901 5.9e-39 166.4 147 53.7
Nn1g07675 Nelumbo nucifera HOM05D002451 ORTHO05D007901 1.9e-37 161.4 112 67.0
Cpa.g.c44357 Carica papaya HOM05D002451 ORTHO05D007901 9.5e-37 159.1 139 61.9
Cpa.g.sc40.100 Carica papaya HOM05D002451 ORTHO05D007901 1.4e-35 155.2 90 78.9
Nitab4.5_0000566g0090 Nicotiana tabacum HOM05D002451 ORTHO05D007901 6.8e-35 152.9 88 77.3
unitig_46.g18400 Utricularia gibba HOM05D002451 ORTHO05D007901 9.8e-34 149.1 88 75.0
Ciclev10010851m.g Citrus clementina HOM05D002451 ORTHO05D007901 3.9e-22 110.5 68 75.0
CBR_g41538 Chara braunii HOM05D002451 ORTHO05D007901 5.2e-19 100.1 121 43.0
TAR636G3106 Trochodendron aralioides HOM05D002451 ORTHO05D007901 9.5e-13 79.3 46 67.4
TPR.G23499 Trifolium pratense HOM05D002451 ORTHO05D007901 1.4e-11 75.5 47 68.1


User provided reference genes

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