Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29146 Brassica carinata HOM05D002277 ORTHO05D001770 1.4e-83 313.2 186 100.0
C04p68330 Brassica napus HOM05D002277 ORTHO05D001770 1.5e-69 266.5 182 89.6
A04p30940 Brassica napus HOM05D002277 ORTHO05D001770 4.3e-69 265.0 182 87.9
BraA04t18552Z Brassica rapa HOM05D002277 ORTHO05D001770 4.3e-69 265.0 182 87.9
BolC4t28335H Brassica oleracea HOM05D002277 ORTHO05D001770 3.7e-68 261.9 182 88.5
BcaC02g07305 Brassica carinata HOM05D002277 ORTHO05D001770 4.1e-67 258.5 180 88.3
Sp4g22820 Schrenkiella parvula HOM05D002277 ORTHO05D001770 5.5e-64 248.1 180 79.4
Thhalv10017268m.g Eutrema salsugineum HOM05D002277 ORTHO05D001770 3.9e-62 241.9 181 83.4
BcaC02g12718 Brassica carinata HOM05D002277 ORTHO05D001770 3.7e-60 235.3 184 72.8
A03p22770 Brassica napus HOM05D002277 ORTHO05D001770 8.2e-60 234.2 180 73.9
BraA03t11501Z Brassica rapa HOM05D002277 ORTHO05D001770 8.2e-60 234.2 180 73.9
BraA05t19171Z Brassica rapa HOM05D002277 ORTHO05D001770 1.3e-57 226.9 180 72.2
A05p01740 Brassica napus HOM05D002277 ORTHO05D001770 1.7e-57 226.5 195 69.7
BcaB01g03537 Brassica carinata HOM05D002277 ORTHO05D001770 3.8e-57 225.3 182 74.2
C04p02010 Brassica napus HOM05D002277 ORTHO05D001770 5.0e-57 224.9 195 68.7
C03p27010 Brassica napus HOM05D002277 ORTHO05D001770 6.5e-57 224.6 178 72.5
CARHR135590 Cardamine hirsuta HOM05D002277 ORTHO05D001770 8.5e-57 224.2 181 79.6
AL4G38320 Arabidopsis lyrata HOM05D002277 ORTHO05D001770 2.1e-55 219.5 185 78.4
AT2G40475 Arabidopsis thaliana HOM05D002277 ORTHO05D001770 1.1e-53 213.8 192 77.1
Carub.0004s2273 Capsella rubella HOM05D002277 ORTHO05D001770 2.2e-52 209.5 183 74.9
BolC4t21852H Brassica oleracea HOM05D002277 ORTHO05D001770 7.0e-51 204.5 160 71.9
BcaC01g05398 Brassica carinata HOM05D002277 ORTHO05D001770 5.5e-48 194.9 169 69.8
Aa31LG5G19050 Aethionema arabicum HOM05D002277 ORTHO05D001770 3.2e-32 142.5 171 59.1
THA.LOC104824354 Tarenaya hassleriana HOM05D002277 ORTHO05D001770 1.0e-22 110.9 203 47.3
Duzib128G0618 Durio zibethinus HOM05D002277 ORTHO05D001770 1.1e-16 90.9 198 39.9
BolC3t15083H Brassica oleracea HOM05D002277 ORTHO05D001770 2.1e-15 86.7 59 72.9
Cpa.g.sc19.91 Carica papaya HOM05D002277 ORTHO05D001770 8.9e-14 81.3 52 65.4
CARHR166420 Cardamine hirsuta HOM05D010959 ORTHO05D001770 3.4e-13 79.3 169 39.1
Thecc.10G174900 Theobroma cacao HOM05D002277 ORTHO05D001770 1.7e-12 77.0 192 36.5
A09p49240 Brassica napus HOM05D010959 ORTHO05D001770 2.9e-12 76.3 188 40.4
Rhsim09G0183700 Rhododendron simsii HOM05D002277 ORTHO05D001770 6.4e-12 75.1 181 35.9
Ciclev10033390m.g Citrus clementina HOM05D002277 ORTHO05D001770 8.3e-12 74.7 178 38.2
TAR633G2754 Trochodendron aralioides HOM05D002277 ORTHO05D001770 8.3e-12 74.7 189 41.3
Thhalv10006243m.g Eutrema salsugineum HOM05D010959 ORTHO05D001770 1.4e-11 73.9 178 38.8
BraA09t40377Z Brassica rapa HOM05D010959 ORTHO05D001770 1.9e-11 73.6 188 39.9
Hma1.2p1_1240F.1_g269550 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 1.9e-11 73.6 199 39.2
Sp5g06240 Schrenkiella parvula HOM05D010959 ORTHO05D001770 1.9e-11 73.6 180 40.0
CSS0032322 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 2.4e-11 73.2 160 35.6
BolC6t37519H Brassica oleracea HOM05D010959 ORTHO05D001770 3.2e-11 72.8 85 47.1
Actinidia33883 Actinidia chinensis HOM05D002277 ORTHO05D001770 5.4e-11 72.0 156 35.3
CiPaw.10G163800 Carya illinoinensis HOM05D002277 ORTHO05D001770 9.2e-11 71.2 164 43.3
A07p22870 Brassica napus HOM05D010959 ORTHO05D001770 1.2e-10 70.9 85 44.7
BraA07t29953Z Brassica rapa HOM05D010959 ORTHO05D001770 1.2e-10 70.9 85 44.7
Carub.0005s2304 Capsella rubella HOM05D010959 ORTHO05D001770 1.2e-10 70.9 151 43.0
Aa31LG10G11170 Aethionema arabicum HOM05D010959 ORTHO05D001770 1.6e-10 70.5 176 45.5
Aqoxy85s002 Aquilegia oxysepala HOM05D002277 ORTHO05D001770 1.6e-10 70.5 192 42.2
BcaC07g39943 Brassica carinata HOM05D010959 ORTHO05D001770 1.6e-10 70.5 193 37.8
BcaC08g44774 Brassica carinata HOM05D010959 ORTHO05D001770 1.6e-10 70.5 85 45.9
C06p23450 Brassica napus HOM05D010959 ORTHO05D001770 1.6e-10 70.5 85 45.9
C08p31590 Brassica napus HOM05D010959 ORTHO05D001770 1.6e-10 70.5 193 40.4
BolC8t50780H Brassica oleracea HOM05D010959 ORTHO05D001770 1.6e-10 70.5 193 40.4
Gohir.D04G013500 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.6e-10 70.5 206 31.6
Gorai.012G015800 Gossypium raimondii HOM05D002277 ORTHO05D001770 1.6e-10 70.5 206 31.6
Prupe.6G289800 Prunus persica HOM05D002277 ORTHO05D001770 1.6e-10 70.5 158 34.8
TAR629G0672 Trochodendron aralioides HOM05D002277 ORTHO05D001770 2.0e-10 70.1 189 38.6
LjContig00357g0012454 Lotus japonicus HOM05D002277 ORTHO05D001770 2.7e-10 69.7 54 63.0
CiPaw.01G304400 Carya illinoinensis HOM05D002277 ORTHO05D001770 3.5e-10 69.3 175 34.3
COL.COLO4_03891 Corchorus olitorius HOM05D002277 ORTHO05D001770 4.6e-10 68.9 212 38.7
TAR636G1485 Trochodendron aralioides HOM05D002277 ORTHO05D001770 6.0e-10 68.6 189 38.1
BcaB01g00009 Brassica carinata HOM05D010959 ORTHO05D001770 7.8e-10 68.2 182 39.0
PSO384G4841 Papaver somniferum HOM05D002277 ORTHO05D001770 1.0e-09 67.8 199 35.7
Psat5g132120 Pisum sativum HOM05D002277 ORTHO05D001770 1.0e-09 67.8 105 42.9
Cc06_g00560 Coffea canephora HOM05D002277 ORTHO05D001770 1.7e-09 67.0 171 36.8
QL07p032796 Quercus lobata HOM05D002277 ORTHO05D001770 2.3e-09 66.6 158 34.8
Glyma.18G021200 Glycine max HOM05D002277 ORTHO05D001770 3.0e-09 66.2 105 41.0
Gohir.A05G402100 Gossypium hirsutum HOM05D002277 ORTHO05D001770 3.0e-09 66.2 207 30.4
Phvul.001G249100 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 3.0e-09 66.2 105 41.9
PGR044G1930 Punica granatum HOM05D002277 ORTHO05D001770 3.0e-09 66.2 57 54.4
Glyma.02G259200 Glycine max HOM05D002277 ORTHO05D001770 3.9e-09 65.9 95 41.1
TAR623G1362 Trochodendron aralioides HOM05D002277 ORTHO05D001770 3.9e-09 65.9 187 38.0
arahy.Tifrunner.gnm1.ann1.H4MVMY Arachis hypogaea HOM05D002277 ORTHO05D001770 5.0e-09 65.5 55 58.2
Cfa017063 Carpinus fangiana HOM05D002277 ORTHO05D001770 5.0e-09 65.5 160 35.0
Glyma.11G235700 Glycine max HOM05D002277 ORTHO05D001770 5.0e-09 65.5 54 59.3
Glyma.14G053500 Glycine max HOM05D002277 ORTHO05D001770 5.0e-09 65.5 95 41.1
Hma1.2p1_1052F.1_g252370 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 5.0e-09 65.5 187 32.1
FAN10G1465 Fragaria x ananassa HOM05D002277 ORTHO05D001770 6.6e-09 65.1 202 36.6
Prupe.2G261100 Prunus persica HOM05D002277 ORTHO05D001770 6.6e-09 65.1 207 37.2
VMungo0647G0912 Vigna mungo HOM05D002277 ORTHO05D001770 6.6e-09 65.1 97 39.2
Atru.chr12.148 Acer truncatum HOM05D002277 ORTHO05D001770 8.6e-09 64.7 83 42.2
Ah.16g104180 Amaranthus hybridus HOM05D002277 ORTHO05D001770 8.6e-09 64.7 203 33.0
AL5G37580 Arabidopsis lyrata HOM05D010959 ORTHO05D001770 8.6e-09 64.7 61 49.2
CSS0043215 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 8.6e-09 64.7 168 43.5
Lalb_Chr08g0231311 Lupinus albus HOM05D002277 ORTHO05D001770 1.5e-08 63.9 168 33.3
Phvul.008G218400 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 1.5e-08 63.9 54 57.4
VMungo1383G0121 Vigna mungo HOM05D002277 ORTHO05D001770 1.5e-08 63.9 97 41.2
BcaB02g07660 Brassica carinata HOM05D010959 ORTHO05D001770 1.9e-08 63.5 98 40.8
Actinidia29050 Actinidia chinensis HOM05D002277 ORTHO05D001770 2.5e-08 63.2 157 33.1
Lalb_Chr04g0250281 Lupinus albus HOM05D002277 ORTHO05D001770 2.5e-08 63.2 54 55.6
Manes.10G005600 Manihot esculenta HOM05D002277 ORTHO05D001770 2.5e-08 63.2 179 41.3
AT3G56260 Arabidopsis thaliana HOM05D010959 ORTHO05D001770 3.3e-08 62.8 148 42.6
CiPaw.09G218200 Carya illinoinensis HOM05D002277 ORTHO05D001770 3.3e-08 62.8 143 32.9
FvH4_7g25590 Fragaria vesca HOM05D002277 ORTHO05D001770 4.3e-08 62.4 204 37.7
Medtr3g072360 Medicago truncatula HOM05D002277 ORTHO05D001770 4.3e-08 62.4 55 58.2
Oeu003223.1 Olea europaea HOM05D002277 ORTHO05D001770 4.3e-08 62.4 183 30.1
TPR.G20193 Trifolium pratense HOM05D002277 ORTHO05D001770 4.3e-08 62.4 54 57.4
PGR004G0074 Punica granatum HOM05D002277 ORTHO05D001770 5.6e-08 62.0 99 39.4
VMungo1383G3736 Vigna mungo HOM05D002277 ORTHO05D001770 5.6e-08 62.0 170 33.5
FAN06G1120 Fragaria x ananassa HOM05D002277 ORTHO05D001770 7.3e-08 61.6 204 38.2
Gohir.D10G187900 Gossypium hirsutum HOM05D002277 ORTHO05D001770 7.3e-08 61.6 193 31.6
Gorai.011G210700 Gossypium raimondii HOM05D002277 ORTHO05D001770 7.3e-08 61.6 193 31.6
CSS0000970 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 9.5e-08 61.2 160 43.1
Cfa001229 Carpinus fangiana HOM05D002277 ORTHO05D001770 9.5e-08 61.2 57 54.4
Nn2g13334 Nelumbo nucifera HOM05D002277 ORTHO05D001770 9.5e-08 61.2 154 40.3
CDE07G2070 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 1.2e-07 60.8 53 56.6
Gohir.A10G181050 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.2e-07 60.8 193 30.6
Sed0016478 Sechium edule HOM05D002277 ORTHO05D001770 1.6e-07 60.5 57 59.6
Haze_21138 Corylus avellana HOM05D002277 ORTHO05D001770 2.1e-07 60.1 102 37.3
Haze_21144 Corylus avellana HOM05D002277 ORTHO05D001770 2.1e-07 60.1 102 37.3
Haze_21148 Corylus avellana HOM05D002277 ORTHO05D001770 2.1e-07 60.1 102 37.3
Eucgr.J00136 Eucalyptus grandis HOM05D002277 ORTHO05D001770 2.1e-07 60.1 84 41.7
PSO339G6062 Papaver somniferum HOM05D002277 ORTHO05D001770 2.1e-07 60.1 157 39.5
Potri.013G083101 Populus trichocarpa HOM05D002277 ORTHO05D001770 2.1e-07 60.1 163 39.3
Gohir.D13G005350 Gossypium hirsutum HOM05D002277 ORTHO05D001770 2.8e-07 59.7 54 61.1
Medtr5g083970 Medicago truncatula HOM05D002277 ORTHO05D001770 2.8e-07 59.7 49 59.2
Phvul.008G086700 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 2.8e-07 59.7 178 30.3
TPR.G649 Trifolium pratense HOM05D002277 ORTHO05D001770 2.8e-07 59.7 55 58.2
Manes.07G138400 Manihot esculenta HOM05D002277 ORTHO05D001770 4.7e-07 58.9 158 31.6
Peaxi162Scf00167g00134 Petunia axillaris HOM05D002277 ORTHO05D001770 4.7e-07 58.9 160 31.9
RcHm_v2.0_Chr1g0371651 Rosa chinensis HOM05D002277 ORTHO05D001770 4.7e-07 58.9 183 37.7
TWI73G0449 Tripterygium wilfordii HOM05D002277 ORTHO05D001770 4.7e-07 58.9 47 63.8
Duzib268G1048 Durio zibethinus HOM05D002277 ORTHO05D001770 6.2e-07 58.5 175 32.6
Gorai.013G006000 Gossypium raimondii HOM05D002277 ORTHO05D001770 6.2e-07 58.5 54 59.3
RcHm_v2.0_Chr3g0460991 Rosa chinensis HOM05D002277 ORTHO05D001770 6.2e-07 58.5 156 32.1
Sed0026001 Sechium edule HOM05D002277 ORTHO05D001770 6.2e-07 58.5 184 32.6
MSTRG.18959 Avicennia marina HOM05D002277 ORTHO05D001770 8.0e-07 58.2 53 50.9
CDE12G0812 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 8.0e-07 58.2 53 50.9
COL.COLO4_30002 Corchorus olitorius HOM05D002277 ORTHO05D001770 8.0e-07 58.2 53 56.6
Duzib212G0079 Durio zibethinus HOM05D002277 ORTHO05D001770 8.0e-07 58.2 161 32.3
Potri.006G107200 Populus trichocarpa HOM05D002277 ORTHO05D001770 8.0e-07 58.2 155 32.3
Nitab4.5_0007794g0020 Nicotiana tabacum HOM05D002277 ORTHO05D001770 1.1e-06 57.8 57 49.1
Thecc.04G155300 Theobroma cacao HOM05D002277 ORTHO05D001770 1.1e-06 57.8 159 35.2
Gohir.A13G005650 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.4e-06 57.4 54 57.4
Oeu003236.1 Olea europaea HOM05D002277 ORTHO05D001770 1.4e-06 57.4 175 30.3
Oeu033238.1 Olea europaea HOM05D002277 ORTHO05D001770 1.4e-06 57.4 162 29.6
QL08p064469 Quercus lobata HOM05D002277 ORTHO05D001770 1.4e-06 57.4 99 38.4
Sc11g0005700 Simmondsia chinensis HOM05D002277 ORTHO05D001770 1.4e-06 57.4 56 51.8
MSTRG.5517 Avicennia marina HOM05D002277 ORTHO05D001770 1.8e-06 57.0 53 50.9
Haze_02921 Corylus avellana HOM05D002277 ORTHO05D001770 1.8e-06 57.0 48 60.4
DCAR_017972 Daucus carota HOM05D007262 ORTHO05D008524 1.8e-06 57.0 55 49.1
FAN02G0282 Fragaria x ananassa HOM05D002277 ORTHO05D001770 1.8e-06 57.0 53 49.1
Gohir.D10G117600 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.8e-06 57.0 160 36.2
Gorai.005G006100 Gossypium raimondii HOM05D002277 ORTHO05D001770 1.8e-06 57.0 58 50.0
Psat7g229920 Pisum sativum HOM05D002277 ORTHO05D001770 1.8e-06 57.0 155 30.3
CANSAT56G3800 Cannabis sativa HOM05D002277 ORTHO05D001770 2.3e-06 56.6 53 50.9
Gohir.A10G149200 Gossypium hirsutum HOM05D002277 ORTHO05D001770 2.3e-06 56.6 159 31.4
Lj2C62G11 Lonicera japonica HOM05D002277 ORTHO05D001770 2.3e-06 56.6 53 52.8
Rhsim03G0150300 Rhododendron simsii HOM05D002277 ORTHO05D001770 2.3e-06 56.6 104 36.5
MSTRG.27280 Avicennia marina HOM05D002277 ORTHO05D001770 3.1e-06 56.2 152 32.2
Lj3g0001226 Lotus japonicus HOM05D002277 ORTHO05D001770 3.1e-06 56.2 163 30.1
Sabra13G0072000 Salix brachista HOM05D002277 ORTHO05D001770 3.1e-06 56.2 166 36.7
unitig_46.g18741 Utricularia gibba HOM05D002277 ORTHO05D001770 3.1e-06 56.2 110 38.2
Ah.08g209750 Amaranthus hybridus HOM05D002277 ORTHO05D001770 4.0e-06 55.8 185 26.5
CDE04G2321 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 4.0e-06 55.8 156 40.4
ClCG04G006490 Citrullus lanatus HOM05D002277 ORTHO05D001770 4.0e-06 55.8 53 56.6
Gohir.A02G005000 Gossypium hirsutum HOM05D002277 ORTHO05D001770 4.0e-06 55.8 90 42.2
Manes.09G115500 Manihot esculenta HOM05D002277 ORTHO05D001770 4.0e-06 55.8 53 52.8
Nitab4.5_0000263g0230 Nicotiana tabacum HOM05D002277 ORTHO05D001770 4.0e-06 55.8 161 32.9
Nitab4.5_0004650g0010 Nicotiana tabacum HOM05D002277 ORTHO05D001770 4.0e-06 55.8 165 31.5
Sabra06G0083400 Salix brachista HOM05D002277 ORTHO05D001770 4.0e-06 55.8 155 31.6
ATR0681G220 Amborella trichopoda HOM05D002277 ORTHO05D001770 5.2e-06 55.5 53 50.9
EL10Ac2g04267 Beta vulgaris HOM05D002277 ORTHO05D001770 5.2e-06 55.5 177 28.8
Lsat_1_v5_gn_2_125460 Lactuca sativa HOM05D002277 ORTHO05D001770 5.2e-06 55.5 181 26.5
AT5G01790 Arabidopsis thaliana HOM05D010646 ORTHO05D001770 6.8e-06 55.1 108 38.9
FAN03G3432 Fragaria x ananassa HOM05D002277 ORTHO05D001770 6.8e-06 55.1 47 59.6
AL6G10240 Arabidopsis lyrata HOM05D010646 ORTHO05D001770 8.9e-06 54.7 41 70.7
Carub.0006s0004 Capsella rubella HOM05D010646 ORTHO05D001770 8.9e-06 54.7 41 70.7
CDE04G2385 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 8.9e-06 54.7 185 35.1
ECA248G3625 Erigeron canadensis HOM05D002277 ORTHO05D001770 8.9e-06 54.7 53 50.9
Sabra13G0071200 Salix brachista HOM05D002277 ORTHO05D001770 8.9e-06 54.7 166 36.7


User provided reference genes

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