Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29138 Brassica carinata HOM05D000695 ORTHO05D010505 1.1e-40 169.5 81 100.0
BcaC02g07362 Brassica carinata HOM05D000695 ORTHO05D010505 1.1e-40 169.5 81 100.0
BcaC08g43828 Brassica carinata HOM05D000695 ORTHO05D010505 6.1e-36 153.7 81 91.4
BcaC05g25957 Brassica carinata HOM05D000695 ORTHO05D010505 4.4e-26 120.9 63 90.5
C05p19060 Brassica napus HOM05D000695 ORTHO05D010505 4.4e-26 120.9 63 90.5
BolC5t30607H Brassica oleracea HOM05D000695 ORTHO05D010505 4.4e-26 120.9 63 90.5
BraA06t24757Z Brassica rapa HOM05D000695 ORTHO05D010505 4.4e-26 120.9 63 90.5
A06p16510 Brassica napus HOM05D000695 ORTHO05D010505 1.3e-25 119.4 63 88.9
BcaB07g32049 Brassica carinata HOM05D000695 ORTHO05D010505 2.9e-25 118.2 63 88.9
BcaB03g14318 Brassica carinata HOM05D000695 ORTHO05D010505 2.4e-24 115.2 63 85.7
A07p15760 Brassica napus HOM05D000695 ORTHO05D010505 2.4e-24 115.2 63 85.7
BraA07t29303Z Brassica rapa HOM05D000695 ORTHO05D010505 2.4e-24 115.2 63 85.7
BcaNung03385 Brassica carinata HOM05D000695 ORTHO05D010505 1.6e-23 112.5 63 82.5
C07p22990 Brassica napus HOM05D000695 ORTHO05D010505 1.6e-23 112.5 63 82.5
BolC7t42839H Brassica oleracea HOM05D000695 ORTHO05D010505 1.6e-23 112.5 63 82.5
Thhalv10009034m.g Eutrema salsugineum HOM05D000695 ORTHO05D010505 2.7e-23 111.7 63 82.5
AL1G33400 Arabidopsis lyrata HOM05D000695 ORTHO05D010505 3.5e-23 111.3 63 81.0
AT1G20470 Arabidopsis thaliana HOM05D000695 ORTHO05D010505 3.5e-23 111.3 63 81.0
Carub.0001s1994 Capsella rubella HOM05D000695 ORTHO05D010505 3.5e-23 111.3 63 81.0
Sp1g18180 Schrenkiella parvula HOM05D000695 ORTHO05D010505 1.3e-22 109.4 63 81.0
CARHR020920 Cardamine hirsuta HOM05D000695 ORTHO05D010505 5.6e-21 104.0 63 77.8
Aa31LG7G4780 Aethionema arabicum HOM05D000695 ORTHO05D010505 9.5e-21 103.2 61 78.7
THA.LOC104809735 Tarenaya hassleriana HOM05D000695 ORTHO05D010505 4.4e-18 94.4 63 69.8
C06p50140 Brassica napus HOM05D000695 ORTHO05D010505 2.2e-17 92.0 64 65.6
BolC6t40054H Brassica oleracea HOM05D000695 ORTHO05D010505 2.2e-17 92.0 64 65.6
AT1G76190 Arabidopsis thaliana HOM05D000695 ORTHO05D010505 3.7e-17 91.3 64 64.1
A07p41760 Brassica napus HOM05D000695 ORTHO05D010505 4.9e-17 90.9 64 65.6
CARHR069750 Cardamine hirsuta HOM05D000695 ORTHO05D010505 6.4e-17 90.5 64 65.6
BcaC08g47114 Brassica carinata HOM05D000695 ORTHO05D010505 1.1e-16 89.7 64 64.1
BraA07t31706Z Brassica rapa HOM05D000695 ORTHO05D010505 1.1e-16 89.7 64 64.1
BcaC08g47282 Brassica carinata HOM05D000695 ORTHO05D010505 1.4e-16 89.4 56 69.6
Carub.0002s2309 Capsella rubella HOM05D000695 ORTHO05D010505 1.9e-16 89.0 64 64.1
Sp5g31340 Schrenkiella parvula HOM05D000695 ORTHO05D010505 9.2e-16 86.7 64 65.6
COL.COLO4_21604 Corchorus olitorius HOM05D000695 ORTHO05D010505 1.0e-14 83.2 59 67.8
Duzib093G0706 Durio zibethinus HOM05D000695 ORTHO05D010505 1.0e-14 83.2 61 65.6
Thecc.08G055900 Theobroma cacao HOM05D000695 ORTHO05D010505 1.7e-14 82.4 59 64.4
Cfa014049 Carpinus fangiana HOM05D000695 ORTHO05D010505 3.0e-14 81.6 54 68.5
Solyc04g082230.1 Solanum lycopersicum HOM05D000695 ORTHO05D010505 3.0e-14 81.6 66 59.1
Haze_22747 Corylus avellana HOM05D000695 ORTHO05D010505 3.9e-14 81.3 54 66.7
AL2G36260 Arabidopsis lyrata HOM05D000695 ORTHO05D010505 5.0e-14 80.9 64 60.9
PGSC0003DMG400009897 Solanum tuberosum HOM05D000243 ORTHO05D010505 6.6e-14 80.5 66 57.6
Cfa014046 Carpinus fangiana HOM05D000695 ORTHO05D010505 8.6e-14 80.1 54 66.7
PSO541G0512 Papaver somniferum HOM05D000695 ORTHO05D010505 8.6e-14 80.1 55 63.6
Nn5g30905 Nelumbo nucifera HOM05D000695 ORTHO05D010505 2.5e-13 78.6 57 64.9
Peaxi162Scf01481g00011 Petunia axillaris HOM05D000695 ORTHO05D010505 2.5e-13 78.6 57 61.4
Atru.chr13.165 Acer truncatum HOM05D000695 ORTHO05D010505 4.3e-13 77.8 65 60.0
Aqoxy6G01825 Aquilegia oxysepala HOM05D000695 ORTHO05D010505 4.3e-13 77.8 57 61.4
TWI56G0454 Tripterygium wilfordii HOM05D000695 ORTHO05D010505 7.3e-13 77.0 56 60.7
Manes.05G136200 Manihot esculenta HOM05D000695 ORTHO05D010505 2.1e-12 75.5 52 63.5
PSO675G6403 Papaver somniferum HOM05D000695 ORTHO05D010505 2.8e-12 75.1 55 58.2
Cpa.g.sc26.221 Carica papaya HOM05D000695 ORTHO05D010505 3.6e-12 74.7 56 62.5
Manes.18G006885 Manihot esculenta HOM05D000695 ORTHO05D010505 6.2e-12 73.9 52 61.5
TAR628G1019 Trochodendron aralioides HOM05D000695 ORTHO05D010505 6.2e-12 73.9 53 62.3
MBI08_g37911_MAGBIO Magnolia biondii HOM05D000695 ORTHO05D000615 8.1e-12 73.6 59 59.3
Migut.C00927 Erythranthe guttata HOM05D000695 ORTHO05D010505 5.2e-11 70.9 68 51.5
HanXRQChr17g0544351 Helianthus annuus HOM05D000057 ORTHO05D000021 2.4e-08 62.0 39 71.8
Phvul.011G025000 Phaseolus vulgaris HOM05D000695 ORTHO05D000615 1.2e-07 59.7 57 49.1
HanXRQChr10g0298291 Helianthus annuus HOM05D000695 ORTHO05D000615 1.6e-07 59.3 64 46.9
HanXRQChr17g0543431 Helianthus annuus HOM05D000057 ORTHO05D000021 1.6e-07 59.3 42 64.3
HPP92_026894 Vanilla planifolia HOM05D000695 ORTHO05D010505 2.1e-07 58.9 53 54.7
A07p15650 Brassica napus HOM05D000695 ORTHO05D010505 3.5e-07 58.2 63 52.4
Gohir.A03G207901 Gossypium hirsutum HOM05D000695 ORTHO05D000615 6.0e-07 57.4 59 47.5
HanXRQChr17g0544371 Helianthus annuus HOM05D000057 ORTHO05D000021 6.0e-07 57.4 42 64.3
Duzib052G0557 Durio zibethinus HOM05D000057 ORTHO05D000021 1.0e-06 56.6 58 50.0
Lsat_1_v5_gn_4_70460 Lactuca sativa HOM05D000695 ORTHO05D000615 1.0e-06 56.6 64 45.3
Aqoxy6G01828 Aquilegia oxysepala HOM05D000695 ORTHO05D000615 1.3e-06 56.2 54 50.0
CARHR243080 Cardamine hirsuta HOM05D000057 ORTHO05D000021 1.3e-06 56.2 63 46.0
HanXRQChr17g0544381 Helianthus annuus HOM05D000057 ORTHO05D000021 1.3e-06 56.2 42 61.9
HanXRQChr17g0544391 Helianthus annuus HOM05D000057 ORTHO05D000021 1.3e-06 56.2 42 61.9
Lsat_1_v5_gn_8_122241 Lactuca sativa HOM05D000695 ORTHO05D000615 1.3e-06 56.2 42 59.5
Potri.009G127400 Populus trichocarpa HOM05D000057 ORTHO05D000021 1.3e-06 56.2 50 54.0
VMungo1127G1582 Vigna mungo HOM05D000695 ORTHO05D000615 1.3e-06 56.2 47 53.2
Lsat_1_v5_gn_8_122340 Lactuca sativa HOM05D000695 ORTHO05D000615 1.7e-06 55.8 39 64.1
SalBow5G2826 Salvia bowleyana HOM05D000695 ORTHO05D000615 1.7e-06 55.8 42 52.4
Gohir.A03G207101 Gossypium hirsutum HOM05D000695 ORTHO05D000615 2.3e-06 55.5 59 44.1
Gohir.D02G229400 Gossypium hirsutum HOM05D000695 ORTHO05D000615 2.3e-06 55.5 59 45.8
Gorai.005G257100 Gossypium raimondii HOM05D000695 ORTHO05D000615 2.3e-06 55.5 59 45.8
Gorai.N012200 Gossypium raimondii HOM05D000695 ORTHO05D000615 2.3e-06 55.5 59 44.1
HanXRQChr15g0478381 Helianthus annuus HOM05D000057 ORTHO05D000021 2.3e-06 55.5 40 65.0
HanXRQChr15g0478401 Helianthus annuus HOM05D000057 ORTHO05D000021 2.3e-06 55.5 40 65.0
HanXRQChr15g0478421 Helianthus annuus HOM05D000057 ORTHO05D000021 2.3e-06 55.5 40 65.0
HanXRQChr15g0478431 Helianthus annuus HOM05D000057 ORTHO05D000021 2.3e-06 55.5 40 65.0
HanXRQChr15g0478451 Helianthus annuus HOM05D000057 ORTHO05D000021 2.3e-06 55.5 40 65.0
HanXRQChr17g0544361 Helianthus annuus HOM05D000057 ORTHO05D000021 2.3e-06 55.5 42 61.9
Potri.009G141150 Populus trichocarpa HOM05D000695 ORTHO05D000615 2.3e-06 55.5 43 58.1
EL10Ac9g21291 Beta vulgaris HOM05D000695 ORTHO05D000615 3.0e-06 55.1 76 40.8
AUR62009964 Chenopodium quinoa HOM05D000695 ORTHO05D000615 3.0e-06 55.1 68 42.6
Ciclev10030035m.g Citrus clementina HOM05D000057 ORTHO05D000021 3.0e-06 55.1 48 50.0
ECA233G5803 Erigeron canadensis HOM05D000695 ORTHO05D000615 3.0e-06 55.1 42 57.1
HanXRQChr15g0478391 Helianthus annuus HOM05D000057 ORTHO05D000021 3.0e-06 55.1 40 67.5
HanXRQChr15g0478411 Helianthus annuus HOM05D000057 ORTHO05D000021 3.0e-06 55.1 40 67.5
TWI79G0873 Tripterygium wilfordii HOM05D000057 ORTHO05D000021 3.0e-06 55.1 48 56.2
TWI79G1117 Tripterygium wilfordii HOM05D000057 ORTHO05D000021 3.0e-06 55.1 48 56.2
Actinidia27837 Actinidia chinensis HOM05D000057 ORTHO05D000021 3.9e-06 54.7 44 59.1
Gohir.D02G228400 Gossypium hirsutum HOM05D000695 ORTHO05D000615 3.9e-06 54.7 53 45.3
Manes.18G006940 Manihot esculenta HOM05D000695 ORTHO05D000615 3.9e-06 54.7 44 54.5
TWI31G0391 Tripterygium wilfordii HOM05D000695 ORTHO05D000615 3.9e-06 54.7 76 38.2
AT4G34780 Arabidopsis thaliana HOM05D000057 ORTHO05D018461 5.1e-06 54.3 44 54.5
COL.COLO4_17227 Corchorus olitorius HOM05D000057 ORTHO05D000021 5.1e-06 54.3 41 58.5
Duzib248G1080 Durio zibethinus HOM05D000057 ORTHO05D000021 5.1e-06 54.3 41 58.5
FAN14G1407 Fragaria x ananassa HOM05D000695 ORTHO05D000615 5.1e-06 54.3 58 43.1
FAN14G3198 Fragaria x ananassa HOM05D000695 ORTHO05D000615 5.1e-06 54.3 58 43.1
Gohir.A04G123150 Gossypium hirsutum HOM05D000057 ORTHO05D000021 5.1e-06 54.3 41 58.5
Gohir.D04G165201 Gossypium hirsutum HOM05D000057 ORTHO05D000021 5.1e-06 54.3 41 58.5
Gorai.005G257000 Gossypium raimondii HOM05D000695 ORTHO05D000615 5.1e-06 54.3 59 44.1
Gorai.012G153700 Gossypium raimondii HOM05D000057 ORTHO05D000021 5.1e-06 54.3 41 58.5
MD05G1113600 Malus domestica HOM05D000057 ORTHO05D000021 5.1e-06 54.3 40 62.5
Potri.009G141201 Populus trichocarpa HOM05D000695 ORTHO05D000615 5.1e-06 54.3 43 58.1
Sabra09G0109700 Salix brachista HOM05D000695 ORTHO05D000615 5.1e-06 54.3 43 55.8
AUR62009980 Chenopodium quinoa HOM05D000695 ORTHO05D000615 6.6e-06 53.9 68 42.6
AUR62012960 Chenopodium quinoa HOM05D000695 ORTHO05D000615 6.6e-06 53.9 39 61.5
Cc02_g16700 Coffea canephora HOM05D000057 ORTHO05D000021 6.6e-06 53.9 55 52.7
Eucgr.I01361 Eucalyptus grandis HOM05D000057 ORTHO05D000021 6.6e-06 53.9 39 64.1
Gohir.D01G163650 Gossypium hirsutum HOM05D000695 ORTHO05D000615 6.6e-06 53.9 38 60.5
Nn6g32343 Nelumbo nucifera HOM05D000057 ORTHO05D000021 6.6e-06 53.9 39 61.5
Sabra09G0097800 Salix brachista HOM05D000057 ORTHO05D000021 6.6e-06 53.9 50 52.0
SEGI_31963 Sequoiadendron giganteum HOM05D000057 ORTHO05D001373 6.6e-06 53.9 42 61.9
Thecc.02G070100 Theobroma cacao HOM05D000057 ORTHO05D000021 6.6e-06 53.9 41 58.5
TWI75G1057 Tripterygium wilfordii HOM05D000695 ORTHO05D000615 6.6e-06 53.9 49 49.0
CSS0021458 Camellia sinensis var. sinensis HOM05D000695 ORTHO05D000615 8.6e-06 53.5 41 53.7
AUR62009968 Chenopodium quinoa HOM05D000695 ORTHO05D000615 8.6e-06 53.5 68 41.2
Duzib132G0307 Durio zibethinus HOM05D000057 ORTHO05D000021 8.6e-06 53.5 55 49.1
FvH4_6g27350 Fragaria vesca HOM05D000695 ORTHO05D000615 8.6e-06 53.5 48 50.0
Gohir.A03G207500 Gossypium hirsutum HOM05D000695 ORTHO05D000615 8.6e-06 53.5 60 46.7
Gohir.D02G228533 Gossypium hirsutum HOM05D000695 ORTHO05D000615 8.6e-06 53.5 59 42.4
Gohir.D02G228800 Gossypium hirsutum HOM05D000695 ORTHO05D000615 8.6e-06 53.5 60 46.7
Gorai.N011900 Gossypium raimondii HOM05D000695 ORTHO05D000615 8.6e-06 53.5 60 46.7
HanXRQChr16g0527791 Helianthus annuus HOM05D000695 ORTHO05D000615 8.6e-06 53.5 43 53.5
Nn5g29289 Nelumbo nucifera HOM05D000057 ORTHO05D000021 8.6e-06 53.5 40 62.5


User provided reference genes

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