Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29131 Brassica carinata HOM05D002733 ORTHO05D003856 2.7e-141 505.4 259 100.0
BcaC02g07356 Brassica carinata HOM05D002733 ORTHO05D003856 3.9e-100 368.6 263 77.6
A04p30010 Brassica napus HOM05D002733 ORTHO05D003856 8.6e-100 367.5 264 77.7
BraA04t18506Z Brassica rapa HOM05D002733 ORTHO05D003856 8.6e-100 367.5 264 77.7
BolC4t28286H Brassica oleracea HOM05D002733 ORTHO05D003856 7.8e-93 344.4 273 70.3
Sp4g22450 Schrenkiella parvula HOM05D002733 ORTHO05D003856 1.1e-57 227.6 270 51.5
Sp5g18240 Schrenkiella parvula HOM05D002733 ORTHO05D003856 1.0e-55 221.1 213 56.8
Thhalv10017517m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 4.6e-53 212.2 268 49.3
BcaB02g09048 Brassica carinata HOM05D002733 ORTHO05D003856 4.3e-51 205.7 255 47.5
A05p06330 Brassica napus HOM05D002733 ORTHO05D003856 8.5e-47 191.4 256 46.5
BcaC02g12127 Brassica carinata HOM05D002733 ORTHO05D003856 1.1e-46 191.0 256 46.1
BolC4t22351H Brassica oleracea HOM05D002733 ORTHO05D003856 1.9e-46 190.3 256 46.1
C04p07280 Brassica napus HOM05D002733 ORTHO05D003856 2.5e-46 189.9 256 46.1
BraA05t19601Z Brassica rapa HOM05D002733 ORTHO05D003856 3.6e-45 186.0 256 46.9
Sp4g22050 Schrenkiella parvula HOM05D002733 ORTHO05D003856 2.4e-41 173.3 180 55.6
AL8G24310 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 4.5e-40 169.1 252 45.2
C03p26370 Brassica napus HOM05D002733 ORTHO05D003856 4.2e-38 162.5 174 52.9
BraA03t11459Z Brassica rapa HOM05D002733 ORTHO05D003856 1.6e-37 160.6 170 54.7
BolC3t15022H Brassica oleracea HOM05D002733 ORTHO05D003856 4.7e-37 159.1 175 52.6
A03p22270 Brassica napus HOM05D002733 ORTHO05D003856 6.1e-37 158.7 170 54.1
AT4G03170 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 2.3e-36 156.8 257 43.6
Aa31LG3G6410 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.7e-36 155.2 176 51.1
AL7G49890 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 1.1e-35 154.5 185 48.1
BcaC01g05431 Brassica carinata HOM05D002733 ORTHO05D003856 1.5e-35 154.1 257 40.1
AL4G37790 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 2.6e-35 153.3 194 47.9
Aa31LG7G1520 Aethionema arabicum HOM05D002733 ORTHO05D003856 7.4e-35 151.8 173 50.9
C03p26740 Brassica napus HOM05D002733 ORTHO05D003856 2.2e-34 150.2 257 39.7
BolC3t15059H Brassica oleracea HOM05D002733 ORTHO05D003856 2.2e-34 150.2 257 39.7
Aa31LG8G17140 Aethionema arabicum HOM05D002733 ORTHO05D003856 7.0e-33 145.2 179 47.5
Thhalv10003384m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 9.1e-33 144.8 149 50.3
AT4G03160 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 1.2e-32 144.4 131 55.7
Aa31LG8G11380 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.3e-31 141.0 135 54.8
Aa31LG8G17220 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.9e-31 139.8 201 41.3
Aa31LG7G1530 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.2e-30 136.0 204 44.6
Aa31LG7G1600 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.2e-30 136.0 176 42.0
Aa31LG8G17170 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.5e-30 135.6 196 41.8
Sp4g22040 Schrenkiella parvula HOM05D010480 ORTHO05D003856 2.7e-29 133.3 171 46.8
Aa31LG7G1540 Aethionema arabicum HOM05D002733 ORTHO05D003856 8.0e-29 131.7 188 47.3
Aa31LG8G17160 Aethionema arabicum HOM05D002733 ORTHO05D003856 8.0e-29 131.7 205 44.4
Aa31LG8G17210 Aethionema arabicum HOM05D002733 ORTHO05D003856 8.0e-29 131.7 133 50.4
AT1G20600 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 8.0e-29 131.7 228 43.4
Aa31LG7G1590 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.0e-28 131.3 195 44.1
CARHR135120 Cardamine hirsuta HOM05D002733 ORTHO05D003856 1.0e-28 131.3 186 44.6
Aa31LG8G17150 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.4e-28 131.0 146 52.1
Carub.0003s2754 Capsella rubella HOM05D002733 ORTHO05D003856 4.0e-28 129.4 133 51.1
Carub.0004s2232 Capsella rubella HOM05D002733 ORTHO05D003856 4.4e-27 125.9 226 39.4
BcaC01g05470 Brassica carinata HOM05D002733 ORTHO05D003856 1.7e-26 124.0 174 44.8
THA.LOC104810048 Tarenaya hassleriana HOM05D002733 ORTHO05D003856 4.8e-26 122.5 197 41.6
Aa31LG7G1550 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.1e-25 119.4 137 48.2
Aa31LG8G17200 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.1e-25 119.4 167 46.1
Aa31LG7G1510 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.0e-24 117.1 134 49.3
Aa31LG8G17190 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.0e-24 117.1 133 48.1
A05p06650 Brassica napus HOM05D010480 ORTHO05D003856 4.2e-22 109.4 174 40.8
BraA05t19631Z Brassica rapa HOM05D010480 ORTHO05D003856 4.2e-22 109.4 174 40.8
BcaC02g12109 Brassica carinata HOM05D010480 ORTHO05D003856 2.7e-21 106.7 179 39.1
BolC4t22394H Brassica oleracea HOM05D010480 ORTHO05D003856 2.7e-21 106.7 179 39.1
Aa31LG7G1580 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.7e-21 105.9 112 53.6
RcHm_v2.0_Chr7g0192641 Rosa chinensis HOM05D002733 ORTHO05D003856 4.7e-21 105.9 117 45.3
C04p07770 Brassica napus HOM05D010480 ORTHO05D003856 8.0e-21 105.1 181 38.1
Potri.001G397100 Populus trichocarpa HOM05D002733 ORTHO05D003856 1.8e-20 104.0 122 42.6
Aa31LG6G10180 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.0e-20 103.2 161 46.0
RcHm_v2.0_Chr2g0120751 Rosa chinensis HOM05D002733 ORTHO05D003856 6.8e-20 102.1 171 39.2
A05p06660 Brassica napus HOM05D010480 ORTHO05D003856 8.8e-20 101.7 189 38.6
Sabra16G0260100 Salix brachista HOM05D002733 ORTHO05D003856 8.8e-20 101.7 110 45.5
BolC4t22395H Brassica oleracea HOM05D010480 ORTHO05D003856 1.2e-19 101.3 172 39.5
BraA05t19632Z Brassica rapa HOM05D010480 ORTHO05D003856 1.5e-19 100.9 189 38.6
FvH4_1g24261 Fragaria vesca HOM05D002733 ORTHO05D003856 1.5e-19 100.9 111 46.8
FvH4_5g06160 Fragaria vesca HOM05D002733 ORTHO05D003856 1.5e-19 100.9 114 44.7
FAN13G0375 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.5e-19 100.9 114 44.7
FAN18G0094 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.5e-19 100.9 114 44.7
FAN23G1126 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.5e-19 100.9 110 47.3
FAN26G1179 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.5e-19 100.9 111 46.8
FAN28G1642 Fragaria x ananassa HOM05D000949 ORTHO05D001276 1.5e-19 100.9 111 46.8
MD15G1316300 Malus domestica HOM05D002733 ORTHO05D003856 3.4e-19 99.8 128 39.1
BcaB02g09089 Brassica carinata HOM05D010480 ORTHO05D003856 4.4e-19 99.4 182 37.9
BcaC02g12108 Brassica carinata HOM05D010480 ORTHO05D003856 5.7e-19 99.0 175 40.0
C04p07780 Brassica napus HOM05D010480 ORTHO05D003856 5.7e-19 99.0 175 40.0
CARHR135110 Cardamine hirsuta HOM05D002733 ORTHO05D003856 5.7e-19 99.0 152 46.1
CiPaw.03G015000 Carya illinoinensis HOM05D002733 ORTHO05D003856 7.5e-19 98.6 114 43.9
Actinidia20408 Actinidia chinensis HOM05D002733 ORTHO05D003856 1.3e-18 97.8 117 41.9
Rhsim05G0042200 Rhododendron simsii HOM05D002733 ORTHO05D003856 1.3e-18 97.8 124 39.5
C04p07760 Brassica napus HOM05D010480 ORTHO05D003856 1.7e-18 97.4 217 36.9
BolC4t22393H Brassica oleracea HOM05D010480 ORTHO05D003856 1.7e-18 97.4 217 36.9
CiPaw.03G015300 Carya illinoinensis HOM05D002733 ORTHO05D003856 2.2e-18 97.1 114 43.9
MD00G1107900 Malus domestica HOM05D002733 ORTHO05D003856 2.2e-18 97.1 131 38.9
Cfa009897 Carpinus fangiana HOM05D002733 ORTHO05D003856 2.8e-18 96.7 125 41.6
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 2.8e-18 96.7 125 41.6
Manes.03G176200 Manihot esculenta HOM05D002733 ORTHO05D003856 2.8e-18 96.7 125 41.6
BcaC02g12110 Brassica carinata HOM05D010480 ORTHO05D003856 6.3e-18 95.5 230 34.3
Manes.03G176000 Manihot esculenta HOM05D002733 ORTHO05D003856 6.3e-18 95.5 125 41.6
VMungo1080G0152 Vigna mungo HOM05D002733 ORTHO05D003856 6.3e-18 95.5 111 41.4
Actinidia09441 Actinidia chinensis HOM05D002733 ORTHO05D003856 8.3e-18 95.1 118 41.5
CiPaw.03G014700 Carya illinoinensis HOM05D002733 ORTHO05D003856 8.3e-18 95.1 114 41.2
BolC3t19780H Brassica oleracea HOM05D010480 ORTHO05D003856 1.1e-17 94.7 145 42.1
Hma1.2p1_1080F.1_g255020 Hydrangea macrophylla HOM05D002733 ORTHO05D003856 1.1e-17 94.7 110 42.7
VMungo1080G0686 Vigna mungo HOM05D002733 ORTHO05D003856 1.1e-17 94.7 116 39.7
Gorai.010G075000 Gossypium raimondii HOM05D002733 ORTHO05D003856 1.4e-17 94.4 129 38.0
BraA05t19630Z Brassica rapa HOM05D010480 ORTHO05D003856 1.8e-17 94.0 251 32.3
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 2.4e-17 93.6 137 36.5
TPR.G8024 Trifolium pratense HOM05D002733 ORTHO05D003856 2.4e-17 93.6 109 41.3
Gohir.D06G064250 Gossypium hirsutum HOM05D002733 ORTHO05D003856 4.1e-17 92.8 129 38.0
TPR.G1412 Trifolium pratense HOM05D002733 ORTHO05D003856 5.4e-17 92.4 113 41.6
A05p06630 Brassica napus HOM05D010480 ORTHO05D003856 7.0e-17 92.0 249 32.9
CSS0001293 Camellia sinensis var. sinensis HOM05D002733 ORTHO05D003856 7.0e-17 92.0 111 41.4
DCAR_028226 Daucus carota HOM05D002733 ORTHO05D003856 7.0e-17 92.0 130 38.5
DCAR_003268 Daucus carota HOM05D002733 ORTHO05D003856 9.1e-17 91.7 117 41.9
Duzib168G2229 Durio zibethinus HOM05D002733 ORTHO05D003856 9.1e-17 91.7 114 41.2
Duzib213G0038 Durio zibethinus HOM05D002733 ORTHO05D003856 9.1e-17 91.7 115 42.6
TPR.G12039 Trifolium pratense HOM05D002733 ORTHO05D003856 1.2e-16 91.3 110 40.0
Prupe.7G224000 Prunus persica HOM05D002733 ORTHO05D003856 1.6e-16 90.9 122 42.6
FAN19G2118 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.0e-16 90.5 118 39.0
Gohir.A06G065650 Gossypium hirsutum HOM05D002733 ORTHO05D003856 2.7e-16 90.1 116 39.7
Phvul.005G031300 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 2.7e-16 90.1 110 40.9
Sed0022151 Sechium edule HOM05D002733 ORTHO05D003856 2.7e-16 90.1 120 38.3
Thecc.09G104200 Theobroma cacao HOM05D002733 ORTHO05D003856 2.7e-16 90.1 114 41.2
COL.COLO4_34789 Corchorus olitorius HOM05D002733 ORTHO05D003856 3.5e-16 89.7 116 42.2
Thecc.07G171000 Theobroma cacao HOM05D002733 ORTHO05D003856 3.5e-16 89.7 181 38.1
FAN23G1485 Fragaria x ananassa HOM05D002733 ORTHO05D003856 4.5e-16 89.4 131 36.6
Nitab4.5_0000316g0140 Nicotiana tabacum HOM05D002733 ORTHO05D003856 4.5e-16 89.4 124 39.5
DCAR_003269 Daucus carota HOM05D002733 ORTHO05D003856 5.9e-16 89.0 118 42.4
Glyma.04G133200 Glycine max HOM05D002733 ORTHO05D003856 5.9e-16 89.0 111 38.7
FvH4_1g16231 Fragaria vesca HOM05D002733 ORTHO05D003856 1.0e-15 88.2 120 38.3
CAN.G1774.3 Capsicum annuum HOM05D002733 ORTHO05D003856 2.3e-15 87.0 111 40.5
Nitab4.5_0001888g0040 Nicotiana tabacum HOM05D002733 ORTHO05D003856 2.3e-15 87.0 112 40.2
CiPaw.03G014800 Carya illinoinensis HOM05D002733 ORTHO05D003856 2.9e-15 86.7 116 42.2
CsaV3_3G004840 Cucumis sativus L. HOM05D002733 ORTHO05D003856 3.8e-15 86.3 116 39.7
DCAR_014131 Daucus carota HOM05D002733 ORTHO05D003856 3.8e-15 86.3 123 40.7
Cpa.g.sc81.85 Carica papaya HOM05D002733 ORTHO05D003856 1.1e-14 84.7 143 35.7
MELO3C004101.2 Cucumis melo HOM05D002733 ORTHO05D003856 1.1e-14 84.7 116 38.8
Lj1g0000886 Lotus japonicus HOM05D002733 ORTHO05D003856 1.1e-14 84.7 118 38.1
MD02G1059300 Malus domestica HOM05D002733 ORTHO05D003856 1.1e-14 84.7 216 28.7
TPR.G1447 Trifolium pratense HOM05D002733 ORTHO05D003856 1.1e-14 84.7 108 41.7
Eucgr.L02178 Eucalyptus grandis HOM05D002733 ORTHO05D003856 1.9e-14 84.0 111 37.8
Medtr3g013810 Medicago truncatula HOM05D002733 ORTHO05D003856 1.9e-14 84.0 198 34.3
Lj3g0006952 Lotus japonicus HOM05D002733 ORTHO05D003856 3.3e-14 83.2 110 40.9
Solyc12g007300.1 Solanum lycopersicum HOM05D002733 ORTHO05D003856 3.3e-14 83.2 112 44.6
Sopen12g003260 Solanum pennellii HOM05D002733 ORTHO05D003856 3.3e-14 83.2 112 44.6
Ciclev10010395m.g Citrus clementina HOM05D002733 ORTHO05D003856 4.2e-14 82.8 111 39.6
Haze_00197 Corylus avellana HOM05D002733 ORTHO05D003856 4.2e-14 82.8 111 40.5
Medtr3g013820 Medicago truncatula HOM05D002733 ORTHO05D003856 4.2e-14 82.8 190 34.2
Prupe.7G223800 Prunus persica HOM05D002733 ORTHO05D003856 4.2e-14 82.8 240 29.6
Sed0027145 Sechium edule HOM05D002733 ORTHO05D003856 5.5e-14 82.4 117 40.2
Haze_00185 Corylus avellana HOM05D002733 ORTHO05D003856 7.2e-14 82.0 110 40.0
TPR.G1395 Trifolium pratense HOM05D002733 ORTHO05D003856 7.2e-14 82.0 129 34.1
Medtr3g013920 Medicago truncatula HOM05D002733 ORTHO05D003856 9.5e-14 81.6 198 33.8
Peaxi162Scf00023g00136 Petunia axillaris HOM05D002733 ORTHO05D003856 1.6e-13 80.9 174 32.2
Ciclev10007038m.g Citrus clementina HOM05D002733 ORTHO05D003856 2.1e-13 80.5 111 38.7
Medtr3g013900 Medicago truncatula HOM05D002733 ORTHO05D003856 2.1e-13 80.5 198 33.8
Prupe.7G223900 Prunus persica HOM05D002733 ORTHO05D003856 2.1e-13 80.5 245 29.4
COL.COLO4_32232 Corchorus olitorius HOM05D002733 ORTHO05D003856 2.8e-13 80.1 117 41.9
Medtr0267s0030 Medicago truncatula HOM05D002733 ORTHO05D003856 2.8e-13 80.1 183 35.0
Eucgr.C01014 Eucalyptus grandis HOM05D002733 ORTHO05D003856 6.1e-13 79.0 122 37.7
QL01p018928 Quercus lobata HOM05D002733 ORTHO05D003856 8.0e-13 78.6 115 39.1
Duzib213G1035 Durio zibethinus HOM05D002733 ORTHO05D003856 1.4e-12 77.8 212 32.5
Sed0017653 Sechium edule HOM05D002733 ORTHO05D003856 1.4e-12 77.8 117 35.9
Aa31LG6G9550 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.0e-12 76.3 73 50.7
MD02G1060300 Malus domestica HOM05D002733 ORTHO05D003856 8.9e-12 75.1 113 37.2
Aa31LG8G17180 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.6e-11 73.6 53 62.3
QL01p018935 Quercus lobata HOM05D002733 ORTHO05D003856 3.4e-11 73.2 219 28.3
PGSC0003DMG400000368 Solanum tuberosum HOM05D002733 ORTHO05D003856 3.4e-11 73.2 235 32.8
Phvul.005G028900 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 4.4e-11 72.8 111 35.1
Nitab4.5_0005564g0030 Nicotiana tabacum HOM05D002733 ORTHO05D003856 1.3e-10 71.2 111 34.2
Peaxi162Scf00665g00126 Petunia axillaris HOM05D002733 ORTHO05D003856 1.7e-10 70.9 90 41.1
QL01p018939 Quercus lobata HOM05D002733 ORTHO05D003856 1.7e-10 70.9 221 29.0
CDE02G0413 Ceratophyllum demersum HOM05D040791 ORTHO05D013425 2.2e-10 70.5 115 33.9
Peaxi162Scf00665g00148 Petunia axillaris HOM05D002733 ORTHO05D003856 2.8e-10 70.1 118 33.9
ATR1159G057 Amborella trichopoda HOM05D020218 ORTHO05D013427 1.8e-09 67.4 108 36.1
Aqoxy1G01499 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 1.8e-09 67.4 106 38.7
Peaxi162Scf00665g00139 Petunia axillaris HOM05D002733 ORTHO05D003856 4.1e-09 66.2 113 36.3
Prupe.7G224100 Prunus persica HOM05D002733 ORTHO05D003856 4.1e-09 66.2 110 33.6
PGSC0003DMG400000371 Solanum tuberosum HOM05D002733 ORTHO05D003856 9.2e-09 65.1 112 33.9
PSO566G0305 Papaver somniferum HOM05D002733 ORTHO05D003856 1.6e-08 64.3 107 38.3
Dinv41650 Davidia involucrata HOM05D002733 ORTHO05D003856 2.0e-08 63.9 86 43.0
CiPaw.03G015100 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.0e-07 61.6 160 32.5
BcaC01g00056 Brassica carinata HOM05D010480 ORTHO05D003856 2.3e-07 60.5 118 39.0
BcaB02g09091 Brassica carinata HOM05D010480 ORTHO05D003856 5.0e-07 59.3 60 48.3
Dinv07992 Davidia involucrata HOM05D002733 ORTHO05D003856 5.0e-07 59.3 82 45.1
Aqoxy2G03580 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 1.1e-06 58.2 208 29.3
PSO782G1409 Papaver somniferum HOM05D002733 ORTHO05D003856 1.9e-06 57.4 106 38.7
ATR0594G191 Amborella trichopoda HOM05D020218 ORTHO05D013427 4.3e-06 56.2 119 31.9
TPR.G22027 Trifolium pratense HOM05D002733 ORTHO05D003856 4.3e-06 56.2 75 38.7
COL.COLO4_10852 Corchorus olitorius HOM05D001713 ORTHO05D001669 5.6e-06 55.8 95 35.8


User provided reference genes

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