Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 2.6e-92 342.0 172 100.0
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 6.0e-73 277.7 174 82.2
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 6.6e-72 274.2 174 81.6
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 8.6e-72 273.9 169 82.8
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 1.9e-71 272.7 174 80.5
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 4.3e-71 271.6 172 83.7
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 4.3e-71 271.6 172 83.7
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 5.6e-71 271.2 175 82.3
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 9.5e-71 270.4 168 82.7
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 2.1e-70 269.2 172 83.1
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 2.8e-70 268.9 175 81.7
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 1.1e-69 266.9 175 81.7
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 2.0e-68 262.7 174 80.5
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 2.6e-68 262.3 171 78.9
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 9.9e-68 260.4 176 77.8
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 1.4e-66 256.5 171 78.9
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 1.4e-66 256.5 171 78.9
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.3e-64 250.0 170 75.9
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 5.1e-64 248.1 174 74.7
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 4.4e-60 235.0 160 78.8
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 1.2e-52 210.3 174 69.5
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 4.6e-49 198.4 166 62.0
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 1.8e-48 196.4 167 61.1
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 3.0e-48 195.7 169 58.6
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 5.1e-48 194.9 169 59.2
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 5.1e-48 194.9 165 61.2
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 6.7e-48 194.5 167 60.5
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 8.7e-48 194.1 169 59.2
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.1e-47 193.7 167 59.9
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.1e-47 193.7 172 59.3
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 1.5e-47 193.4 167 59.9
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 7.4e-47 191.0 168 57.7
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 7.4e-47 191.0 167 59.9
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 9.6e-47 190.7 129 78.3
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 1.3e-46 190.3 167 59.3
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 1.6e-46 189.9 169 58.6
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 2.1e-46 189.5 167 59.3
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 3.7e-46 188.7 167 58.7
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 3.7e-46 188.7 167 58.7
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 3.7e-46 188.7 172 58.1
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 6.2e-46 188.0 167 58.7
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 1.1e-45 187.2 167 58.1
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 2.4e-45 186.0 170 57.1
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 2.4e-45 186.0 173 57.8
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 4.0e-45 185.3 167 58.7
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 4.0e-45 185.3 166 57.2
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 4.0e-45 185.3 166 57.2
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 1.2e-44 183.7 166 56.6
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 1.5e-44 183.3 118 79.7
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 1.5e-44 183.3 170 57.1
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 1.5e-44 183.3 167 56.9
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 7.6e-44 181.0 166 57.2
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 9.9e-44 180.6 167 56.9
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.7e-43 179.9 167 57.5
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 2.9e-43 179.1 166 56.6
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 2.9e-43 179.1 167 56.9
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 4.9e-43 178.3 167 55.1
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 6.4e-43 177.9 169 53.8
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 3.2e-42 175.6 166 56.0
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 3.2e-42 175.6 169 54.4
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 3.2e-42 175.6 175 52.6
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 4.2e-42 175.3 176 56.2
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 4.2e-42 175.3 167 54.5
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 4.2e-42 175.3 167 55.7
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 5.5e-42 174.9 176 56.2
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 5.5e-42 174.9 176 55.7
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 7.1e-42 174.5 166 56.6
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 2.7e-41 172.6 165 54.5
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 3.5e-41 172.2 170 54.7
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 4.6e-41 171.8 134 67.2
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 6.0e-41 171.4 174 56.9
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 6.0e-41 171.4 169 51.5
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 6.0e-41 171.4 165 55.2
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 7.9e-41 171.0 166 54.2
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.0e-40 170.6 161 55.3
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 6.7e-40 167.9 166 53.6
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 6.7e-40 167.9 167 50.9
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 1.1e-39 167.2 166 53.0
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.1e-39 167.2 166 53.6
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 1.5e-39 166.8 166 53.6
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 2.5e-39 166.0 166 53.6
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 2.5e-39 166.0 165 51.5
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 2.5e-39 166.0 166 53.0
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 2.5e-39 166.0 166 52.4
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 2.5e-39 166.0 158 54.4
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 3.3e-39 165.6 161 54.0
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 3.3e-39 165.6 166 53.0
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 5.6e-39 164.9 166 53.0
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 7.4e-39 164.5 165 53.9
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 9.6e-39 164.1 166 53.6
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 9.6e-39 164.1 127 67.7
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 9.6e-39 164.1 166 53.6
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 2.1e-38 162.9 165 50.9
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 2.1e-38 162.9 165 52.7
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 2.8e-38 162.5 166 51.8
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 2.8e-38 162.5 166 51.8
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 2.8e-38 162.5 166 50.6
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 6.2e-38 161.4 154 53.9
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 1.4e-37 160.2 165 50.9
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.8e-37 159.8 166 51.2
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 3.1e-37 159.1 166 50.6
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 3.1e-37 159.1 173 49.1
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 4.0e-37 158.7 168 51.8
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 4.0e-37 158.7 167 51.5
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 5.3e-37 158.3 166 52.4
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 1.2e-36 157.1 160 53.1
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 1.5e-36 156.8 170 48.2
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 2.0e-36 156.4 166 51.2
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 4.5e-36 155.2 166 51.2
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 4.5e-36 155.2 170 47.6
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 5.8e-36 154.8 163 49.7
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 7.6e-36 154.5 166 50.6
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.7e-35 153.3 175 54.9
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 2.2e-35 152.9 166 50.6
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 4.9e-35 151.8 167 49.7
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 6.5e-35 151.4 177 53.7
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 8.4e-35 151.0 173 52.6
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 4.2e-34 148.7 159 48.4
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 9.3e-34 147.5 129 59.7
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 1.2e-33 147.1 133 59.4
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 2.3e-32 142.9 112 60.7
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 4.3e-31 138.7 170 50.0
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 5.0e-27 125.2 130 52.3
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 5.0e-27 125.2 128 54.7
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 2.5e-26 122.9 131 52.7
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 7.2e-26 121.3 166 42.2
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.8e-24 116.7 168 44.0
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 5.1e-24 115.2 159 43.4
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.1e-23 114.0 168 43.5
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.9e-23 113.2 168 44.0
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 1.9e-23 113.2 175 40.6
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 3.3e-23 112.5 98 53.1
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 7.4e-23 111.3 166 44.6
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.1e-21 107.5 139 42.4
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 1.8e-21 106.7 160 39.4
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 2.6e-20 102.8 159 40.9
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 3.8e-19 99.0 83 61.4
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 6.5e-19 98.2 145 40.0
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 6.5e-19 98.2 151 34.4
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 1.4e-18 97.1 150 34.0
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 2.5e-18 96.3 66 63.6
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 1.0e-16 90.9 116 37.9
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 5.1e-16 88.6 92 51.1
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 4.8e-14 82.0 63 57.1
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 1.7e-11 73.6 103 37.9
Sp4g08150 Schrenkiella parvula HOM05D000096 ORTHO05D000045 1.4e-10 70.5 45 75.6
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 2.5e-10 69.7 92 43.5
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 4.2e-10 68.9 63 46.0
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 2.7e-09 66.2 70 54.3
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 3.6e-09 65.9 82 43.9
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 2.0e-07 60.1 109 36.7
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 2.0e-07 60.1 166 34.3
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 5.7e-07 58.5 80 37.5
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.7e-06 57.0 64 57.8
TAR371G0914 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.7e-06 57.0 42 61.9
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 3.7e-06 55.8 65 52.3
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 4.8e-06 55.5 69 53.6


User provided reference genes

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