Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28974 Brassica carinata HOM05D003265 ORTHO05D003819 9.6e-287 989.6 538 100.0
Sp4g19390 Schrenkiella parvula HOM05D003265 ORTHO05D003819 3.8e-174 615.5 607 65.2
Thhalv10016413m.g Eutrema salsugineum HOM05D003265 ORTHO05D003819 5.8e-167 591.7 604 65.2
BolC4t28061H Brassica oleracea HOM05D003265 ORTHO05D003819 4.2e-165 585.5 558 67.9
C04p65680 Brassica napus HOM05D003265 ORTHO05D003819 5.3e-160 568.5 570 66.3
A04p28340 Brassica napus HOM05D003265 ORTHO05D003819 7.7e-159 564.7 563 67.0
BcaC02g07549 Brassica carinata HOM05D003265 ORTHO05D003819 7.2e-157 558.1 554 66.2
BraA04t18315Z Brassica rapa HOM05D003265 ORTHO05D003819 6.3e-153 545.0 562 65.5
AL4G33420 Arabidopsis lyrata HOM05D003265 ORTHO05D003819 3.6e-132 476.1 583 58.1
Carub.0004s1895 Capsella rubella HOM05D003265 ORTHO05D003819 7.0e-128 461.8 581 56.6
AT2G37070 Arabidopsis thaliana HOM05D003265 ORTHO05D003819 4.6e-111 406.0 573 53.4
CARHR131570 Cardamine hirsuta HOM05D003265 ORTHO05D003819 2.9e-110 403.3 637 50.4
AL5G34230 Arabidopsis lyrata HOM05D003265 ORTHO05D003819 2.6e-90 337.0 587 46.7
Aa31LG5G22370 Aethionema arabicum HOM05D003265 ORTHO05D003819 6.4e-89 332.4 585 49.1
AT3G53320 Arabidopsis thaliana HOM05D003265 ORTHO05D003819 9.6e-85 318.5 579 44.9
Sp5g09010 Schrenkiella parvula HOM05D003265 ORTHO05D003819 1.7e-81 307.8 588 43.9
Thhalv10010259m.g Eutrema salsugineum HOM05D003265 ORTHO05D003819 1.1e-80 305.1 587 44.6
Carub.0005s1987 Capsella rubella HOM05D003265 ORTHO05D003819 2.7e-79 300.4 582 44.0
CARHR163240 Cardamine hirsuta HOM05D003265 ORTHO05D003819 2.5e-77 293.9 586 42.2
THA.LOC104806495 Tarenaya hassleriana HOM05D003265 ORTHO05D003819 1.6e-76 291.2 612 42.0
Aa31LG10G8510 Aethionema arabicum HOM05D003265 ORTHO05D003819 1.1e-75 288.5 601 42.1
BcaB01g00290 Brassica carinata HOM05D003265 ORTHO05D003819 3.3e-69 266.9 586 41.6
BraA09t40099Z Brassica rapa HOM05D003265 ORTHO05D003819 3.2e-64 250.4 580 41.6
A09p46340 Brassica napus HOM05D003265 ORTHO05D003819 1.2e-63 248.4 579 40.9
BcaC07g39697 Brassica carinata HOM05D003265 ORTHO05D003819 3.4e-58 230.3 561 40.6
BolC8t50462H Brassica oleracea HOM05D003265 ORTHO05D003819 3.4e-58 230.3 561 40.6
C08p28530 Brassica napus HOM05D003265 ORTHO05D003819 2.2e-57 227.6 574 39.4
Atru.chr8.2556 Acer truncatum HOM05D003265 ORTHO05D003819 3.3e-37 160.6 534 34.3
Cfa017508 Carpinus fangiana HOM05D003265 ORTHO05D003819 3.7e-36 157.1 531 33.7
TWI74G1096 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 2.6e-34 151.0 581 33.2
Haze_20650 Corylus avellana HOM05D003265 ORTHO05D003819 3.8e-33 147.1 530 32.6
Duzib128G1251 Durio zibethinus HOM05D003265 ORTHO05D003819 4.2e-32 143.7 604 31.5
Dinv37252 Davidia involucrata HOM05D003265 ORTHO05D003819 1.4e-30 138.7 446 33.6
MD12G1124300 Malus domestica HOM05D003265 ORTHO05D003819 3.9e-30 137.1 520 31.2
COL.COLO4_27082 Corchorus olitorius HOM05D003265 ORTHO05D003819 5.1e-30 136.7 593 29.5
Thecc.05G053900 Theobroma cacao HOM05D003265 ORTHO05D003819 8.8e-30 136.0 597 30.5
MD04G1104400 Malus domestica HOM05D003265 ORTHO05D003819 2.6e-29 134.4 610 30.0
Eucgr.A01175 Eucalyptus grandis HOM05D003265 ORTHO05D003819 6.3e-28 129.8 451 33.7
Ciclev10011133m.g Citrus clementina HOM05D003265 ORTHO05D003819 8.2e-28 129.4 597 29.1
TWI77G0315 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 8.2e-28 129.4 522 31.4
CiPaw.10G137500 Carya illinoinensis HOM05D003265 ORTHO05D003819 2.4e-27 127.9 600 31.3
Manes.08G003400 Manihot esculenta HOM05D003265 ORTHO05D003819 2.6e-26 124.4 530 31.5
Prupe.6G241300 Prunus persica HOM05D003265 ORTHO05D003819 2.6e-26 124.4 607 30.8
Gohir.A01G217200 Gossypium hirsutum HOM05D003265 ORTHO05D003819 3.5e-26 124.0 600 29.8
RcHm_v2.0_Chr3g0468801 Rosa chinensis HOM05D003265 ORTHO05D003819 3.5e-26 124.0 593 31.0
Gorai.002G250300 Gossypium raimondii HOM05D003265 ORTHO05D003819 1.7e-25 121.7 599 29.0
QL07p045275 Quercus lobata HOM05D003265 ORTHO05D003819 1.7e-25 121.7 535 31.8
FvH4_6g15330 Fragaria vesca HOM05D003265 ORTHO05D003819 2.9e-25 120.9 581 30.5
Gohir.D01G205900 Gossypium hirsutum HOM05D003265 ORTHO05D003819 5.0e-25 120.2 601 29.3
Potri.016G085600 Populus trichocarpa HOM05D003265 ORTHO05D003819 6.5e-25 119.8 452 33.0
Migut.L01659 Erythranthe guttata HOM05D003265 ORTHO05D003819 1.1e-24 119.0 586 29.0
Sopen09g002240 Solanum pennellii HOM05D003265 ORTHO05D003819 1.1e-24 119.0 541 29.9
Glyma.03G177900 Glycine max HOM05D003265 ORTHO05D003819 3.2e-24 117.5 442 31.7
PGR004G1993 Punica granatum HOM05D000855 ORTHO05D002321 3.2e-24 117.5 543 31.3
MELO3C009314.2 Cucumis melo HOM05D003265 ORTHO05D003819 4.2e-24 117.1 529 30.6
RhsimUnG0118100 Rhododendron simsii HOM05D003265 ORTHO05D003819 4.2e-24 117.1 488 28.7
Ah.15g092100 Amaranthus hybridus HOM05D003265 ORTHO05D003819 5.5e-24 116.7 508 30.5
Lalb_Chr20g0112961 Lupinus albus HOM05D003265 ORTHO05D003819 5.5e-24 116.7 553 30.2
Solyc09g007340.4 Solanum lycopersicum HOM05D000855 ORTHO05D002321 5.5e-24 116.7 528 29.7
CSS0020316 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 9.4e-24 115.9 521 30.9
FAN05G5644 Fragaria x ananassa HOM05D003265 ORTHO05D003819 9.4e-24 115.9 608 30.6
Nn2g10657 Nelumbo nucifera HOM05D003265 ORTHO05D003819 1.2e-23 115.5 571 29.6
PGSC0003DMG400001737 Solanum tuberosum HOM05D003265 ORTHO05D003819 1.2e-23 115.5 557 29.4
Sc20g0004060 Simmondsia chinensis HOM05D003265 ORTHO05D003819 6.1e-23 113.2 516 30.6
EL10Ac7g17351 Beta vulgaris HOM05D003265 ORTHO05D003819 1.8e-22 111.7 511 28.8
Ca_08825_v3 Cicer arietinum L. HOM05D003265 ORTHO05D003819 2.3e-22 111.3 511 30.7
Cc06_g03550 Coffea canephora HOM05D003265 ORTHO05D003819 4.0e-22 110.5 551 28.9
CsaV3_3G035550 Cucumis sativus L. HOM05D003265 ORTHO05D003819 6.7e-22 109.8 484 31.6
ClCG10G020560 Citrullus lanatus HOM05D003265 ORTHO05D003819 1.1e-21 109.0 495 32.1
Psat3g044800 Pisum sativum HOM05D003265 ORTHO05D003819 1.5e-21 108.6 565 31.5
Rhsim04G0151400 Rhododendron simsii HOM05D003265 ORTHO05D003819 1.5e-21 108.6 519 29.1
FAN05G5023 Fragaria x ananassa HOM05D003265 ORTHO05D003819 2.6e-21 107.8 616 29.2
MSTRG.26726 Avicennia marina HOM05D003265 ORTHO05D003819 3.3e-21 107.5 502 29.5
Lsat_1_v5_gn_1_53881 Lactuca sativa HOM05D003265 ORTHO05D003819 5.7e-21 106.7 406 30.8
Lalb_Chr01g0019031 Lupinus albus HOM05D003265 ORTHO05D003819 1.3e-20 105.5 584 28.6
Nitab4.5_0001142g0090 Nicotiana tabacum HOM05D000855 ORTHO05D002321 1.3e-20 105.5 536 28.5
Phvul.001G174800 Phaseolus vulgaris HOM05D003265 ORTHO05D003819 1.3e-20 105.5 445 33.5
Nitab4.5_0003895g0030 Nicotiana tabacum HOM05D000855 ORTHO05D002321 1.7e-20 105.1 509 30.1
Sabra16G0092200 Salix brachista HOM05D003265 ORTHO05D003819 1.7e-20 105.1 496 31.5
Nn2g12994 Nelumbo nucifera HOM05D003265 ORTHO05D003819 6.3e-20 103.2 545 26.6
MSTRG.10296 Avicennia marina HOM05D003265 ORTHO05D003819 8.2e-20 102.8 534 29.4
SalBow4G0859 Salvia bowleyana HOM05D003265 ORTHO05D003819 8.2e-20 102.8 507 31.0
AUR62040021 Chenopodium quinoa HOM05D003265 ORTHO05D003819 1.1e-19 102.4 510 30.8
HanXRQChr11g0350071 Helianthus annuus HOM05D003265 ORTHO05D003819 1.1e-19 102.4 470 29.8
GSVIVG01025624001 Vitis vinifera HOM05D000855 ORTHO05D002321 2.4e-19 101.3 183 42.1
Dinv35709 Davidia involucrata HOM05D003265 ORTHO05D003819 3.1e-19 100.9 587 27.8
VMungo1383G3553 Vigna mungo HOM05D003265 ORTHO05D003819 3.1e-19 100.9 501 29.7
GSVIVG01016342001 Vitis vinifera HOM05D003265 ORTHO05D003819 7.0e-19 99.8 508 28.7
Lj1g0023124 Lotus japonicus HOM05D003265 ORTHO05D003819 1.6e-18 98.6 438 31.3
Medtr7g100700 Medicago truncatula HOM05D003265 ORTHO05D003819 1.6e-18 98.6 551 29.6
PSO339G3745 Papaver somniferum HOM05D003265 ORTHO05D003819 1.6e-18 98.6 530 29.2
AUR62042920 Chenopodium quinoa HOM05D003265 ORTHO05D003819 4.5e-18 97.1 485 30.5
Duzib106G1383 Durio zibethinus HOM05D003265 ORTHO05D003819 7.7e-18 96.3 600 28.8
vmacro20061 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 7.7e-18 96.3 144 43.8
Dinv04678 Davidia involucrata HOM05D003265 ORTHO05D003819 1.0e-17 95.9 462 30.7
ECA248G3421 Erigeron canadensis HOM05D002706 ORTHO05D003253 1.0e-17 95.9 497 30.4
Actinidia13106 Actinidia chinensis HOM05D003265 ORTHO05D003819 1.3e-17 95.5 229 33.2
PSO384G1633 Papaver somniferum HOM05D003265 ORTHO05D003819 2.2e-17 94.7 528 29.4
TAR623G0684 Trochodendron aralioides HOM05D003265 ORTHO05D003819 5.0e-17 93.6 619 27.5
HanXRQChr01g0027471 Helianthus annuus HOM05D003265 ORTHO05D003819 1.1e-16 92.4 563 27.5
Gohir.D09G147700 Gossypium hirsutum HOM05D003265 ORTHO05D003819 1.5e-16 92.0 479 28.8
FAN14G0893 Fragaria x ananassa HOM05D000009 ORTHO05D003819 1.9e-16 91.7 610 28.7
Oeu026844.1 Olea europaea HOM05D003265 ORTHO05D003819 2.5e-16 91.3 522 27.8
SGA_v2.0_scaffold35G14161 Striga asiatica HOM05D003265 ORTHO05D003819 2.5e-16 91.3 560 26.1
Psat6g070560 Pisum sativum HOM05D003265 ORTHO05D003819 4.2e-16 90.5 526 28.9
Lj5g0012648 Lotus japonicus HOM05D003265 ORTHO05D003819 1.2e-15 89.0 551 28.9
DCAR_017729 Daucus carota HOM05D003265 ORTHO05D003819 1.6e-15 88.6 481 28.3
Hma1.2p1_0111F.1_g053890 Hydrangea macrophylla HOM05D003265 ORTHO05D003819 2.7e-15 87.8 161 39.8
Gorai.006G168800 Gossypium raimondii HOM05D003265 ORTHO05D003819 3.6e-15 87.4 569 27.8
TPR.G36939 Trifolium pratense HOM05D003265 ORTHO05D003819 6.1e-15 86.7 504 26.8
unitig_746.g26760 Utricularia gibba HOM05D003265 ORTHO05D003819 8.0e-15 86.3 116 51.7
Hund20166 Selenicereus undatus HOM05D003265 ORTHO05D003819 1.0e-14 85.9 478 26.8
TAR633G0548 Trochodendron aralioides HOM05D003265 ORTHO05D003819 2.3e-14 84.7 583 26.9
MD07G1179700 Malus domestica HOM05D003265 ORTHO05D003819 3.0e-14 84.3 445 28.3
arahy.Tifrunner.gnm1.ann1.1ZS95I Arachis hypogaea HOM05D003265 ORTHO05D003819 4.0e-14 84.0 542 30.1
Glyma.19G178700 Glycine max HOM05D003265 ORTHO05D003819 5.2e-14 83.6 402 31.1
Oeu035141.2 Olea europaea HOM05D003265 ORTHO05D003819 1.2e-13 82.4 583 25.6
Sed0024874 Sechium edule HOM05D003265 ORTHO05D003819 1.2e-13 82.4 541 29.0
Sabra06G0103300 Salix brachista HOM05D003265 ORTHO05D003819 2.0e-13 81.6 462 28.8
FAN09G0144 Fragaria x ananassa HOM05D003265 ORTHO05D003819 2.6e-13 81.3 615 27.6
Medtr1g066870 Medicago truncatula HOM05D003265 ORTHO05D003819 3.4e-13 80.9 556 28.4
Gohir.A13G021500 Gossypium hirsutum HOM05D003265 ORTHO05D003819 4.4e-13 80.5 447 27.5
Os05g0121800 Oryza sativa ssp. japonica HOM05D003265 ORTHO05D003819 7.5e-13 79.7 493 28.0
TPR.G30247 Trifolium pratense HOM05D003265 ORTHO05D003819 7.5e-13 79.7 430 29.5
Duzib106G1563 Durio zibethinus HOM05D003265 ORTHO05D003819 9.8e-13 79.3 452 27.0
Potri.006G131650 Populus trichocarpa HOM05D003265 ORTHO05D003819 9.8e-13 79.3 556 29.1
Prupe.2G219100 Prunus persica HOM05D003265 ORTHO05D003819 1.7e-12 78.6 498 29.3
Aqoxy3G02606 Aquilegia oxysepala HOM05D003265 ORTHO05D003819 2.2e-12 78.2 578 27.0
SHI12573 Sapria himalayana HOM05D003265 ORTHO05D003819 2.8e-12 77.8 556 27.3
Thecc.10G067600 Theobroma cacao HOM05D003265 ORTHO05D003819 4.8e-12 77.0 468 27.6
Gohir.D11G344100 Gossypium hirsutum HOM05D003265 ORTHO05D003819 6.3e-12 76.6 453 28.5
Gohir.D13G022100 Gossypium hirsutum HOM05D003265 ORTHO05D003819 6.3e-12 76.6 446 27.1
Gorai.007G374500 Gossypium raimondii HOM05D003265 ORTHO05D003819 6.3e-12 76.6 453 28.5
Manes.10G042100 Manihot esculenta HOM05D003265 ORTHO05D003819 6.3e-12 76.6 430 28.1
Gorai.013G024900 Gossypium raimondii HOM05D003265 ORTHO05D003819 8.3e-12 76.3 450 26.7
arahy.Tifrunner.gnm1.ann1.H355B7 Arachis hypogaea HOM05D003265 ORTHO05D003819 1.1e-11 75.9 543 29.7
CiPaw.01G276700 Carya illinoinensis HOM05D003265 ORTHO05D003819 1.4e-11 75.5 444 28.2
COL.COLO4_23753 Corchorus olitorius HOM05D003265 ORTHO05D003819 1.4e-11 75.5 481 26.6
Sed0003387 Sechium edule HOM05D003265 ORTHO05D003819 1.4e-11 75.5 572 27.3
QL08p056892 Quercus lobata HOM05D003265 ORTHO05D003819 1.8e-11 75.1 551 27.0
MELO3C025500.2 Cucumis melo HOM05D003265 ORTHO05D003819 3.1e-11 74.3 473 27.3
CSS0006813 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 4.1e-11 73.9 149 39.6
Lj1A924T53 Lonicera japonica HOM05D003265 ORTHO05D003819 4.1e-11 73.9 395 26.8
Haze_16937 Corylus avellana HOM05D003265 ORTHO05D003819 5.4e-11 73.6 555 26.3
Sabra19G0043100 Salix brachista HOM05D003265 ORTHO05D010313 9.1e-11 72.8 105 44.8
Sabra19G0046300 Salix brachista HOM05D003265 ORTHO05D010313 9.1e-11 72.8 105 44.8
Gohir.A11G325100 Gossypium hirsutum HOM05D003265 ORTHO05D003819 4.5e-10 70.5 452 28.1
Sed0014651 Sechium edule HOM05D003265 ORTHO05D003819 1.0e-09 69.3 520 27.1
DCAR_014962 Daucus carota HOM05D003265 ORTHO05D003819 3.8e-09 67.4 466 26.6
FAN06G2521 Fragaria x ananassa HOM05D003265 ORTHO05D003819 5.0e-09 67.0 149 34.9
CSS0028328 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 6.5e-09 66.6 184 33.7
CSS0013290 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 1.1e-08 65.9 456 29.2
ClCG09G020420 Citrullus lanatus HOM05D003265 ORTHO05D003819 1.5e-08 65.5 513 25.1
Actinidia05272 Actinidia chinensis HOM05D003265 ORTHO05D003819 1.9e-08 65.1 52 57.7
CSS0011554 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 3.2e-08 64.3 133 37.6
FAN06G4411 Fragaria x ananassa HOM05D000122 ORTHO05D003819 3.2e-08 64.3 149 33.6
CSS0047156 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 4.2e-08 63.9 91 45.1
Cpa.g.sc53.18 Carica papaya HOM05D003265 ORTHO05D003819 4.2e-08 63.9 490 23.9
ATR1159G095 Amborella trichopoda HOM05D003265 ORTHO05D003819 5.5e-08 63.5 579 25.6
Rhsim03G0122700 Rhododendron simsii HOM05D003265 ORTHO05D003819 9.5e-08 62.8 564 25.7
FvH4_7g20180 Fragaria vesca HOM05D003265 ORTHO05D003819 2.1e-07 61.6 287 27.5
HPP92_013898 Vanilla planifolia HOM05D003265 ORTHO05D003819 2.1e-07 61.6 112 36.6
CSS0047270 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 3.6e-07 60.8 179 33.0
FAN03G0618 Fragaria x ananassa HOM05D003265 ORTHO05D003819 3.6e-07 60.8 396 27.5
Zm00001eb105840 Zea mays HOM05D003265 ORTHO05D003819 4.7e-07 60.5 412 27.2
CsaV3_5G026000 Cucumis sativus L. HOM05D003265 ORTHO05D003819 6.1e-07 60.1 472 26.5
Oeu026065.2 Olea europaea HOM05D003265 ORTHO05D003819 6.1e-07 60.1 461 26.0
Actinidia38248 Actinidia chinensis HOM05D003265 ORTHO05D003819 1.4e-06 58.9 551 25.4
Zm00001eb322540 Zea mays HOM05D003265 ORTHO05D003819 2.3e-06 58.2 470 25.3
Potri.008G044500 Populus trichocarpa HOM05D003265 ORTHO05D003819 3.0e-06 57.8 463 27.2
TWI63G0250 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 3.0e-06 57.8 398 26.9
Peaxi162Scf00005g04612 Petunia axillaris HOM05D003265 ORTHO05D003819 4.0e-06 57.4 531 26.0
CDE04G0439 Ceratophyllum demersum HOM05D000106 ORTHO05D003819 6.8e-06 56.6 476 23.5


User provided reference genes

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