Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28958 Brassica carinata HOM05D006298 ORTHO05D008167 8.6e-128 460.3 228 100.0
A04p28210 Brassica napus HOM05D006298 ORTHO05D008167 1.9e-114 416.0 228 91.2
C04p65570 Brassica napus HOM05D006298 ORTHO05D008167 1.9e-114 416.0 228 91.2
BraA04t18305Z Brassica rapa HOM05D006298 ORTHO05D008167 1.6e-113 412.9 228 90.8
BolC4t28046H Brassica oleracea HOM05D006298 ORTHO05D008167 4.6e-113 411.4 228 90.4
BcaC02g07571 Brassica carinata HOM05D006298 ORTHO05D008167 3.0e-112 408.7 228 89.9
Sp4g19190 Schrenkiella parvula HOM05D006298 ORTHO05D008167 8.1e-110 400.6 238 87.0
Thhalv10017183m.g Eutrema salsugineum HOM05D006298 ORTHO05D008167 1.6e-105 386.3 237 84.8
Aa31LG5G22130 Aethionema arabicum HOM05D006298 ORTHO05D008167 6.0e-97 357.8 240 79.2
Carub.0004s1875 Capsella rubella HOM05D006298 ORTHO05D008167 9.6e-95 350.5 238 78.6
AT2G36895 Arabidopsis thaliana HOM05D006298 ORTHO05D008167 9.3e-90 334.0 265 70.2
Manes.08G011200 Manihot esculenta HOM05D006298 ORTHO05D008167 3.1e-85 318.9 245 68.2
THA.LOC104807061 Tarenaya hassleriana HOM05D006298 ORTHO05D008167 1.5e-84 316.6 240 68.8
THA.LOC104805233 Tarenaya hassleriana HOM05D006298 ORTHO05D008167 4.5e-84 315.1 270 65.2
Cfa017623 Carpinus fangiana HOM05D006298 ORTHO05D008167 7.6e-84 314.3 240 70.0
Sabra16G0098900 Salix brachista HOM05D006298 ORTHO05D008167 1.7e-83 313.2 240 69.6
Thecc.05G068100 Theobroma cacao HOM05D006298 ORTHO05D008167 2.2e-83 312.8 235 71.5
Phvul.007G147500 Phaseolus vulgaris HOM05D006298 ORTHO05D008167 3.8e-83 312.0 236 71.6
TAR623G0635 Trochodendron aralioides HOM05D006298 ORTHO05D008167 1.1e-82 310.5 245 68.2
QL07p043135 Quercus lobata HOM05D006298 ORTHO05D008167 2.5e-82 309.3 237 68.4
VMungo0720G2332 Vigna mungo HOM05D006298 ORTHO05D008167 2.5e-82 309.3 237 70.5
Rhsim03G0091000 Rhododendron simsii HOM05D006298 ORTHO05D008167 9.3e-82 307.4 243 67.5
CiPaw.09G171800 Carya illinoinensis HOM05D006298 ORTHO05D008167 2.1e-81 306.2 240 67.9
COL.COLO4_26951 Corchorus olitorius HOM05D006298 ORTHO05D008167 4.6e-81 305.1 235 68.5
Potri.016G099300 Populus trichocarpa HOM05D006298 ORTHO05D008167 6.1e-81 304.7 240 67.9
ClCG10G020070 Citrullus lanatus HOM05D006298 ORTHO05D008167 1.3e-80 303.5 208 73.1
Cpa.g.sc102.32 Carica papaya HOM05D006298 ORTHO05D008167 2.3e-80 302.8 237 67.9
CSS0011355 Camellia sinensis var. sinensis HOM05D006298 ORTHO05D008167 6.7e-80 301.2 246 66.7
TWI53G1706 Tripterygium wilfordii HOM05D006298 ORTHO05D008167 8.7e-80 300.8 237 66.7
Gohir.D01G130400 Gossypium hirsutum HOM05D006298 ORTHO05D008167 1.1e-79 300.4 239 66.5
Gorai.002G161800 Gossypium raimondii HOM05D006298 ORTHO05D008167 1.1e-79 300.4 239 66.5
Cc06_g04290 Coffea canephora HOM05D006298 ORTHO05D008167 1.5e-79 300.1 237 67.1
CsaV3_3G036020 Cucumis sativus L. HOM05D006298 ORTHO05D008167 1.5e-79 300.1 209 72.7
Gohir.A01G141763 Gossypium hirsutum HOM05D006298 ORTHO05D008167 1.9e-79 299.7 239 66.5
Haze_20529 Corylus avellana HOM05D006298 ORTHO05D008167 2.5e-79 299.3 260 63.8
Lj2A120T46 Lonicera japonica HOM05D006298 ORTHO05D008167 5.7e-79 298.1 245 66.1
GSVIVG01033647001 Vitis vinifera HOM05D006298 ORTHO05D008167 7.4e-79 297.7 238 67.2
CSS0035285 Camellia sinensis var. sinensis HOM05D006298 ORTHO05D008167 3.7e-78 295.4 247 65.6
Duzib106G2039 Durio zibethinus HOM05D006298 ORTHO05D008167 1.4e-77 293.5 234 68.4
MD04G1092500 Malus domestica HOM05D006298 ORTHO05D008167 2.4e-77 292.7 243 67.5
Sed0010557 Sechium edule HOM05D006298 ORTHO05D008167 3.1e-77 292.4 239 67.4
PGR142G1273 Punica granatum HOM05D006298 ORTHO05D008167 5.3e-77 291.6 229 68.1
Ciclev10012651m.g Citrus clementina HOM05D006298 ORTHO05D008167 6.9e-77 291.2 238 66.4
TWI77G0409 Tripterygium wilfordii HOM05D006298 ORTHO05D008167 6.9e-77 291.2 238 66.0
Prupe.7G128900 Prunus persica HOM05D006298 ORTHO05D008167 1.2e-76 290.4 242 66.1
Hma1.2p1_0205F.1_g086920 Hydrangea macrophylla HOM05D006298 ORTHO05D008167 2.6e-76 289.3 238 65.1
Actinidia08768 Actinidia chinensis HOM05D006298 ORTHO05D008167 5.9e-76 288.1 248 64.1
Lj4g0025039 Lotus japonicus HOM05D006298 ORTHO05D008167 1.0e-75 287.3 243 65.0
PGSC0003DMG400028288 Solanum tuberosum HOM05D006298 ORTHO05D008167 1.7e-75 286.6 216 65.3
Sopen10g033440 Solanum pennellii HOM05D006298 ORTHO05D008167 3.8e-75 285.4 243 60.5
Solyc10g083990.2 Solanum lycopersicum HOM05D006298 ORTHO05D008167 6.5e-75 284.6 243 60.5
Ca_11509_v3 Cicer arietinum L. HOM05D006298 ORTHO05D008167 8.5e-75 284.3 236 63.1
FAN02G1782 Fragaria x ananassa HOM05D006298 ORTHO05D008167 1.1e-74 283.9 233 66.1
BcaC02g07569 Brassica carinata HOM05D006298 ORTHO05D008167 1.4e-74 283.5 181 82.9
DCAR_017674 Daucus carota HOM05D006298 ORTHO05D008167 1.4e-74 283.5 241 63.5
FAN05G1999 Fragaria x ananassa HOM05D006298 ORTHO05D008167 1.9e-74 283.1 233 66.1
FAN05G2800 Fragaria x ananassa HOM05D006298 ORTHO05D008167 1.9e-74 283.1 233 66.1
Oeu053684.1 Olea europaea HOM05D006298 ORTHO05D008167 3.2e-74 282.3 249 63.1
FvH4_6g16470 Fragaria vesca HOM05D006298 ORTHO05D008167 4.2e-74 282.0 231 66.2
FAN14G4061 Fragaria x ananassa HOM05D006298 ORTHO05D008167 4.2e-74 282.0 231 66.2
HanXRQChr11g0350481 Helianthus annuus HOM05D006298 ORTHO05D008167 4.2e-74 282.0 238 64.3
Eucgr.K02926 Eucalyptus grandis HOM05D006298 ORTHO05D008167 9.4e-74 280.8 244 61.9
FAN09G1272 Fragaria x ananassa HOM05D006298 ORTHO05D008167 9.4e-74 280.8 233 64.4
RcHm_v2.0_Chr3g0470361 Rosa chinensis HOM05D006298 ORTHO05D008167 9.4e-74 280.8 236 65.7
Glyma.13G142000 Glycine max HOM05D006298 ORTHO05D008167 2.7e-73 279.3 166 80.1
arahy.Tifrunner.gnm1.ann1.GSM08A Arachis hypogaea HOM05D006298 ORTHO05D008167 6.1e-73 278.1 241 61.8
arahy.Tifrunner.gnm1.ann1.UZM884 Arachis hypogaea HOM05D006298 ORTHO05D008167 6.1e-73 278.1 241 61.8
AL4G33120 Arabidopsis lyrata HOM05D006298 ORTHO05D008167 7.9e-73 277.7 233 67.8
Sc20g0005540 Simmondsia chinensis HOM05D006298 ORTHO05D008167 7.9e-73 277.7 204 67.2
Lsat_1_v5_gn_1_51681 Lactuca sativa HOM05D006298 ORTHO05D008167 1.4e-72 276.9 240 63.8
Nitab4.5_0000063g0130 Nicotiana tabacum HOM05D006298 ORTHO05D008167 1.4e-72 276.9 198 70.2
CANSAT80G2892 Cannabis sativa HOM05D006298 ORTHO05D008167 2.3e-72 276.2 210 68.1
Peaxi162Scf00311g01110 Petunia axillaris HOM05D006298 ORTHO05D008167 2.3e-72 276.2 235 63.4
Lalb_Chr21g0315031 Lupinus albus HOM05D006298 ORTHO05D008167 3.0e-72 275.8 235 63.8
TPR.G11270 Trifolium pratense HOM05D006298 ORTHO05D008167 3.0e-72 275.8 242 62.0
Migut.J00651 Erythranthe guttata HOM05D006298 ORTHO05D008167 3.9e-72 275.4 243 63.4
Nitab4.5_0000814g0050 Nicotiana tabacum HOM05D006298 ORTHO05D008167 3.9e-72 275.4 244 61.1
Glyma.10G054900 Glycine max HOM05D006298 ORTHO05D008167 6.7e-72 274.6 169 76.9
Atru.BG.206.p Acer truncatum HOM05D006298 ORTHO05D008167 2.0e-71 273.1 160 79.4
Psat6g073640 Pisum sativum HOM05D006298 ORTHO05D008167 3.3e-71 272.3 188 70.2
Actinidia28907 Actinidia chinensis HOM05D006298 ORTHO05D008167 4.3e-71 271.9 289 56.1
HPP92_022584 Vanilla planifolia HOM05D006298 ORTHO05D008167 7.4e-71 271.2 246 60.2
Aqoxy1G01145 Aquilegia oxysepala HOM05D006298 ORTHO05D008167 9.7e-71 270.8 251 60.2
PSO339G0145 Papaver somniferum HOM05D006298 ORTHO05D008167 9.7e-71 270.8 223 63.7
SGA_v2.0_scaffold40G15525 Striga asiatica HOM05D006298 ORTHO05D008167 3.7e-70 268.9 245 62.4
vmacro07297 Vaccinium macrocarpon HOM05D006298 ORTHO05D008167 4.8e-70 268.5 163 79.8
PSO063G5537 Papaver somniferum HOM05D006298 ORTHO05D008167 1.4e-69 266.9 223 63.2
AUR62042070 Chenopodium quinoa HOM05D006298 ORTHO05D008167 3.1e-69 265.8 241 60.2
AUR62044331 Chenopodium quinoa HOM05D006298 ORTHO05D008167 3.1e-69 265.8 241 60.2
AUR62040336 Chenopodium quinoa HOM05D006298 ORTHO05D008167 6.9e-69 264.6 244 60.2
EL10Ac7g16640 Beta vulgaris HOM05D006298 ORTHO05D008167 9.1e-69 264.2 256 58.6
ATR0219G012 Amborella trichopoda HOM05D006298 ORTHO05D008167 5.9e-68 261.5 244 58.2
MBI18_g02636_MAGBIO Magnolia biondii HOM05D006298 ORTHO05D008167 1.3e-67 260.4 228 59.6
Os03g0152600 Oryza sativa ssp. japonica HOM05D006298 ORTHO05D008167 1.7e-67 260.0 210 62.4
CDE03G0133 Ceratophyllum demersum HOM05D006298 ORTHO05D008167 8.8e-64 247.7 246 54.9
CDE04G2630 Ceratophyllum demersum HOM05D006298 ORTHO05D008167 1.5e-63 246.9 246 55.3
Ah.08g211590 Amaranthus hybridus HOM05D006298 ORTHO05D008167 5.7e-63 245.0 205 60.5
ECA248G3050 Erigeron canadensis HOM05D006298 ORTHO05D008167 6.3e-62 241.5 167 71.9
Duzib093G1320 Durio zibethinus HOM05D006298 ORTHO05D008167 2.3e-56 223.0 236 55.9
Nn6g35281 Nelumbo nucifera HOM05D006298 ORTHO05D008167 3.9e-56 222.2 163 69.3
Mapoly0063s0087 Marchantia polymorpha HOM05D006298 ORTHO05D008167 5.2e-56 221.9 205 54.1
SMO119G0246 Selaginella moellendorffii HOM05D006298 ORTHO05D008167 2.2e-54 216.5 193 56.5
AUR62042510 Chenopodium quinoa HOM05D006298 ORTHO05D008167 9.1e-53 211.1 240 54.2
Atru.chr8.1795 Acer truncatum HOM05D006298 ORTHO05D008167 2.6e-52 209.5 110 88.2
Pp3c6_17550 Physcomitrium patens HOM05D006298 ORTHO05D008167 3.2e-50 202.6 242 46.3
unitig_26.g9235 Utricularia gibba HOM05D006298 ORTHO05D008167 7.2e-50 201.4 132 74.2
SEGI_37587 Sequoiadendron giganteum HOM05D006298 ORTHO05D008167 2.7e-49 199.5 131 74.0
Dinv35789 Davidia involucrata HOM05D006298 ORTHO05D008167 6.1e-49 198.4 189 62.4
Medtr1g063100 Medicago truncatula HOM05D006298 ORTHO05D008167 2.0e-47 193.4 182 61.5
CARHR131360 Cardamine hirsuta HOM05D006298 ORTHO05D008167 6.5e-43 178.3 90 92.2
Zm00001eb403160 Zea mays HOM05D006298 ORTHO05D008167 4.7e-41 172.2 158 58.9
AagrBONN_evm.TU.Sc2ySwM_228.4347 Anthoceros agrestis HOM05D006298 ORTHO05D008167 1.0e-32 144.4 108 61.1
Hma1.2p1_0205F.1_g086930 Hydrangea macrophylla HOM05D006298 ORTHO05D008167 1.5e-31 140.6 150 56.7
Thhalv10000465m.g Eutrema salsugineum HOM05D006298 ORTHO05D008167 1.1e-29 134.4 114 65.8
CBR_g45378 Chara braunii HOM05D006298 ORTHO05D008167 1.8e-29 133.7 88 71.6
BcaB01g03809 Brassica carinata HOM05D006298 ORTHO05D008167 2.4e-29 133.3 96 71.9
Cre11.g469100 Chlamydomonas reinhardtii HOM05D006298 ORTHO05D008167 1.6e-28 130.6 174 44.3
BcaC04g19302 Brassica carinata HOM05D006298 ORTHO05D008167 2.6e-23 113.2 86 70.9
Medtr6g035275 Medicago truncatula HOM05D006298 ORTHO05D008167 4.1e-21 105.9 56 89.3
MD12G1110600 Malus domestica HOM05D006298 ORTHO05D008167 6.2e-17 92.0 49 83.7
BcaC02g07570 Brassica carinata HOM05D006298 ORTHO05D008167 1.3e-14 84.3 38 92.1
Ca_27221_v3 Cicer arietinum L. HOM05D006298 ORTHO05D008167 4.1e-13 79.3 65 56.9
Prupe.4G234300 Prunus persica HOM05D006298 ORTHO05D007008 2.6e-07 60.1 31 80.6
arahy.Tifrunner.gnm1.ann1.31G0Q2 Arachis hypogaea HOM05D006298 ORTHO05D082484 2.2e-06 57.0 33 69.7


User provided reference genes

Program Settings