Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28884 Brassica carinata HOM05D005113 ORTHO05D006045 4.7e-38 161.0 100 100.0
A04p27340 Brassica napus HOM05D005113 ORTHO05D006045 1.2e-28 129.8 100 74.0
BraA04t18232Z Brassica rapa HOM05D005113 ORTHO05D006045 9.9e-28 126.7 100 77.0
BolC4t27961H Brassica oleracea HOM05D005113 ORTHO05D006045 4.6e-25 117.9 89 83.1
BcaC02g07662 Brassica carinata HOM05D005113 ORTHO05D006045 1.0e-24 116.7 89 82.0
C04p64840 Brassica napus HOM05D005113 ORTHO05D006045 2.8e-22 108.6 92 76.1
BcaB01g03875 Brassica carinata HOM05D005113 ORTHO05D006045 1.8e-21 105.9 94 77.7
AL4G31960 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 9.9e-20 100.1 99 63.6
C03p23070 Brassica napus HOM05D005113 ORTHO05D006045 1.9e-18 95.9 100 73.0
A03p19780 Brassica napus HOM05D005113 ORTHO05D006045 2.4e-18 95.5 100 73.0
BraA03t11230Z Brassica rapa HOM05D005113 ORTHO05D006045 2.4e-18 95.5 100 73.0
BcaC01g05698 Brassica carinata HOM05D005113 ORTHO05D006045 5.4e-18 94.4 100 72.0
BolC3t14709H Brassica oleracea HOM05D005113 ORTHO05D006045 5.4e-18 94.4 100 72.0
Carub.0004s1761 Capsella rubella HOM05D005113 ORTHO05D006045 2.3e-16 89.0 81 67.9
AT2G35850 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 8.7e-16 87.0 86 69.8
CARHR130110 Cardamine hirsuta HOM05D005113 ORTHO05D006045 2.5e-15 85.5 98 60.2
Thhalv10010863m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 2.8e-14 82.0 85 58.8
AT3G52360 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 3.7e-14 81.6 77 61.0
Aa31LG10G7390 Aethionema arabicum HOM05D005113 ORTHO05D006045 4.8e-14 81.3 85 58.8
BcaB02g08576 Brassica carinata HOM05D005113 ORTHO05D006045 4.8e-14 81.3 85 58.8
BcaC02g09265 Brassica carinata HOM05D005113 ORTHO05D006045 4.8e-14 81.3 85 58.8
A04p07080 Brassica napus HOM05D005113 ORTHO05D006045 4.8e-14 81.3 85 58.8
C04p40660 Brassica napus HOM05D005113 ORTHO05D006045 4.8e-14 81.3 85 58.8
BolC4t25648H Brassica oleracea HOM05D005113 ORTHO05D006045 4.8e-14 81.3 85 58.8
BraA04t16405Z Brassica rapa HOM05D005113 ORTHO05D006045 4.8e-14 81.3 85 58.8
AL5G33010 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 8.1e-14 80.5 77 59.7
Sp5g09930 Schrenkiella parvula HOM05D005113 ORTHO05D006045 1.4e-13 79.7 85 58.8
BcaB01g00380 Brassica carinata HOM05D005113 ORTHO05D006045 2.4e-13 79.0 77 58.4
CARHR162120 Cardamine hirsuta HOM05D005113 ORTHO05D006045 2.4e-13 79.0 94 52.1
BcaC07g39601 Brassica carinata HOM05D005113 ORTHO05D006045 3.1e-13 78.6 77 58.4
A09p45370 Brassica napus HOM05D005113 ORTHO05D006045 3.1e-13 78.6 85 56.5
C08p27550 Brassica napus HOM05D005113 ORTHO05D006045 3.1e-13 78.6 77 58.4
BolC8t50376H Brassica oleracea HOM05D005113 ORTHO05D006045 3.1e-13 78.6 77 58.4
BraA09t40001Z Brassica rapa HOM05D005113 ORTHO05D006045 3.1e-13 78.6 85 56.5
Carub.0005s1871 Capsella rubella HOM05D005113 ORTHO05D006045 1.5e-12 76.3 83 57.8
PSO339G6075 Papaver somniferum HOM05D005113 ORTHO05D006045 2.0e-12 75.9 84 53.6
PSO384G2214 Papaver somniferum HOM05D005113 ORTHO05D006045 1.0e-11 73.6 84 52.4
Ciclev10013205m.g Citrus clementina HOM05D005113 ORTHO05D006045 1.7e-11 72.8 81 53.1
QL07p026499 Quercus lobata HOM05D005113 ORTHO05D006045 2.2e-11 72.4 79 53.2
THA.LOC104803378 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 2.2e-11 72.4 77 55.8
Cpa.g.sc222.18 Carica papaya HOM05D005113 ORTHO05D006045 2.9e-11 72.0 77 54.5
Haze_20118 Corylus avellana HOM05D005113 ORTHO05D006045 4.9e-11 71.2 80 53.8
Thhalv10017703m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 6.5e-11 70.9 45 84.4
Sp4g18110 Schrenkiella parvula HOM05D005113 ORTHO05D006045 8.4e-11 70.5 44 86.4
TWI74G1336 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 8.4e-11 70.5 88 52.3
Dinv11892 Davidia involucrata HOM05D005113 ORTHO05D006045 1.1e-10 70.1 79 55.7
TWI77G0719 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 1.1e-10 70.1 78 53.8
Aqoxy1G00593 Aquilegia oxysepala HOM05D005113 ORTHO05D006045 1.4e-10 69.7 79 57.0
CiPaw.10G020600 Carya illinoinensis HOM05D005113 ORTHO05D006045 1.4e-10 69.7 79 54.4
Nn2g14410 Nelumbo nucifera HOM05D005113 ORTHO05D006045 1.4e-10 69.7 75 57.3
Dinv25078 Davidia involucrata HOM05D005113 ORTHO05D006045 2.5e-10 68.9 79 55.7
TWI53G1462 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 2.5e-10 68.9 79 53.2
TAR623G1290 Trochodendron aralioides HOM05D005113 ORTHO05D006045 2.5e-10 68.9 75 53.3
Haze_07788 Corylus avellana HOM05D005113 ORTHO05D006045 4.2e-10 68.2 79 50.6
Sabra16G0067600 Salix brachista HOM05D005113 ORTHO05D006045 4.2e-10 68.2 73 53.4
Potri.006G200000 Populus trichocarpa HOM05D005113 ORTHO05D006045 7.1e-10 67.4 73 53.4
THA.LOC104803375 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 7.1e-10 67.4 93 48.4
Nn1g06541 Nelumbo nucifera HOM05D005113 ORTHO05D006045 1.2e-09 66.6 75 52.0
Thecc.05G109700 Theobroma cacao HOM05D005113 ORTHO05D006045 1.2e-09 66.6 83 49.4
TAR369G1050 Trochodendron aralioides HOM05D005113 ORTHO05D006045 2.1e-09 65.9 70 54.3
Duzib093G2033 Durio zibethinus HOM05D005113 ORTHO05D006045 2.7e-09 65.5 72 51.4
Gorai.007G363100 Gossypium raimondii HOM05D005113 ORTHO05D006045 2.7e-09 65.5 74 50.0
Sabra06G0153800 Salix brachista HOM05D005113 ORTHO05D006045 2.7e-09 65.5 73 50.7
Potri.016G066200 Populus trichocarpa HOM05D005113 ORTHO05D006045 3.5e-09 65.1 73 50.7
Atru.chr8.1293 Acer truncatum HOM05D005113 ORTHO05D006045 4.6e-09 64.7 84 50.0
Actinidia07952 Actinidia chinensis HOM05D005113 ORTHO05D006045 4.6e-09 64.7 72 55.6
CSS0024187 Camellia sinensis var. sinensis HOM05D005113 ORTHO05D006045 4.6e-09 64.7 72 52.8
GSVIVG01022551001 Vitis vinifera HOM05D005113 ORTHO05D006045 4.6e-09 64.7 83 50.6
CANSAT64G1258 Cannabis sativa HOM05D005113 ORTHO05D006045 6.0e-09 64.3 89 46.1
CiPaw.09G023700 Carya illinoinensis HOM05D005113 ORTHO05D006045 1.0e-08 63.5 91 45.1
Duzib106G0847 Durio zibethinus HOM05D005113 ORTHO05D006045 1.3e-08 63.2 97 42.3
FAN05G0955 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.3e-08 63.2 98 46.9
FAN05G3212 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.3e-08 63.2 98 46.9
RcHm_v2.0_Chr3g0477281 Rosa chinensis HOM05D005113 ORTHO05D006045 1.8e-08 62.8 98 44.9
Actinidia06192 Actinidia chinensis HOM05D005113 ORTHO05D006045 2.3e-08 62.4 80 51.2
FAN09G1514 Fragaria x ananassa HOM05D005113 ORTHO05D006045 2.3e-08 62.4 98 46.9
MD14G1044100 Malus domestica HOM05D005113 ORTHO05D006045 2.3e-08 62.4 99 47.5
TAR633G2365 Trochodendron aralioides HOM05D005113 ORTHO05D006045 2.3e-08 62.4 79 51.9
Gohir.A11G315200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 3.9e-08 61.6 74 48.6
PSO384G1750 Papaver somniferum HOM05D005113 ORTHO05D006045 3.9e-08 61.6 99 43.4
Cfa019390 Carpinus fangiana HOM05D005113 ORTHO05D006045 5.1e-08 61.2 79 50.6
Gohir.D11G332200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 5.1e-08 61.2 74 47.3
BraA09t40003Z Brassica rapa HOM05D005113 ORTHO05D006045 6.7e-08 60.8 77 49.4
FvH4_6g20940 Fragaria vesca HOM05D005113 ORTHO05D006045 6.7e-08 60.8 92 43.5
FAN14G1795 Fragaria x ananassa HOM05D005113 ORTHO05D006045 6.7e-08 60.8 92 43.5
MBI05_g03323_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 1.5e-07 59.7 79 44.3
MD12G1045200 Malus domestica HOM05D005113 ORTHO05D006045 1.5e-07 59.7 95 46.3
Prupe.7G090200 Prunus persica HOM05D005113 ORTHO05D006045 1.5e-07 59.7 92 46.7
FAN02G2823 Fragaria x ananassa HOM05D005113 ORTHO05D006045 3.3e-07 58.5 99 43.4
Manes.08G036800 Manihot esculenta HOM05D005113 ORTHO05D006045 3.3e-07 58.5 71 47.9
MSTRG.26588 Avicennia marina HOM05D005113 ORTHO05D006045 5.7e-07 57.8 95 44.2
Gohir.D04G093000 Gossypium hirsutum HOM05D005113 ORTHO05D006045 9.6e-07 57.0 79 40.5
Migut.L01845 Erythranthe guttata HOM05D005113 ORTHO05D006045 2.1e-06 55.8 71 46.5
MBI11_g26202_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 2.1e-06 55.8 86 43.0
MBI11_g46321_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 2.1e-06 55.8 86 43.0
HPP92_013935 Vanilla planifolia HOM05D005113 ORTHO05D006045 3.7e-06 55.1 86 46.5
Oeu020160.1 Olea europaea HOM05D005113 ORTHO05D006045 8.2e-06 53.9 89 43.8


User provided reference genes

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