Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 1.4e-131 473.0 242 100.0
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 3.2e-112 408.7 254 86.6
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 3.2e-112 408.7 250 87.2
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 1.6e-111 406.4 253 87.0
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 6.0e-111 404.4 246 88.2
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 4.3e-109 398.3 246 87.0
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 7.3e-109 397.5 247 86.2
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 2.8e-108 395.6 246 86.2
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 3.4e-106 388.7 246 85.0
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 4.4e-106 388.3 246 85.0
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 1.3e-105 386.7 247 84.6
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 1.3e-105 386.7 247 84.6
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 1.4e-104 383.3 251 82.9
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 9.2e-104 380.6 250 82.0
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 4.7e-100 368.2 249 80.3
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 1.8e-99 366.3 225 87.6
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 1.5e-98 363.2 250 80.0
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 3.4e-82 308.9 253 67.6
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 2.9e-81 305.8 251 66.1
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 6.0e-79 298.1 251 66.1
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 1.3e-78 297.0 249 64.3
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 2.5e-77 292.7 248 64.1
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 3.3e-77 292.4 248 63.7
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 4.3e-77 292.0 251 62.9
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 4.3e-77 292.0 247 63.6
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 7.3e-77 291.2 247 63.2
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 1.6e-76 290.0 247 63.2
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 2.8e-76 289.3 247 62.8
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 3.6e-76 288.9 259 61.4
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 4.8e-76 288.5 250 64.4
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 4.8e-76 288.5 254 63.8
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 8.1e-76 287.7 249 63.9
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 8.1e-76 287.7 248 63.3
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 8.1e-76 287.7 246 63.8
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 1.1e-75 287.3 251 64.1
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 1.1e-75 287.3 248 63.7
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 1.1e-75 287.3 251 63.3
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 1.4e-75 287.0 245 64.9
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 1.8e-75 286.6 247 62.3
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 1.8e-75 286.6 250 61.2
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 2.4e-75 286.2 252 62.3
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 2.4e-75 286.2 252 62.3
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 2.4e-75 286.2 252 62.3
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 3.1e-75 285.8 252 62.3
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 5.3e-75 285.0 252 63.1
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 6.9e-75 284.6 246 61.8
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 9.0e-75 284.3 252 62.7
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 9.0e-75 284.3 249 60.2
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 9.0e-75 284.3 251 61.8
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 1.2e-74 283.9 253 60.5
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 1.2e-74 283.9 254 61.0
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 1.2e-74 283.9 249 61.0
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 1.5e-74 283.5 252 61.9
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 1.5e-74 283.5 258 61.6
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 2.0e-74 283.1 248 62.5
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 2.0e-74 283.1 251 60.6
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 2.6e-74 282.7 251 63.7
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 5.8e-74 281.6 252 63.5
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 9.9e-74 280.8 196 73.0
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 9.9e-74 280.8 256 62.1
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 1.3e-73 280.4 195 72.8
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.3e-73 280.4 251 60.2
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 2.2e-73 279.6 252 58.7
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 2.9e-73 279.3 194 71.6
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 2.9e-73 279.3 207 68.1
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 2.9e-73 279.3 256 61.3
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 3.8e-73 278.9 251 61.4
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 3.8e-73 278.9 250 60.8
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 4.9e-73 278.5 196 73.0
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 4.9e-73 278.5 198 71.7
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 4.9e-73 278.5 196 70.4
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 6.4e-73 278.1 207 68.6
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 6.4e-73 278.1 247 60.7
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 6.4e-73 278.1 249 61.8
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 1.1e-72 277.3 195 72.8
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 1.4e-72 276.9 251 63.7
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 1.9e-72 276.6 246 61.4
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.9e-72 276.6 251 61.4
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 1.9e-72 276.6 198 70.7
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 2.4e-72 276.2 247 60.7
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 4.2e-72 275.4 246 60.6
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 4.2e-72 275.4 176 74.4
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 7.1e-72 274.6 251 60.2
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 1.6e-71 273.5 251 63.3
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 2.1e-71 273.1 216 66.2
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 2.1e-71 273.1 249 60.6
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 7.9e-71 271.2 248 60.9
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 1.0e-70 270.8 247 63.2
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 1.0e-70 270.8 192 70.3
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 1.8e-70 270.0 248 61.7
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 2.3e-70 269.6 249 59.0
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 3.0e-70 269.2 247 62.3
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 5.1e-70 268.5 251 61.0
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 5.1e-70 268.5 250 60.4
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 5.1e-70 268.5 190 70.0
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 5.1e-70 268.5 244 61.9
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 1.1e-69 267.3 197 67.0
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 1.5e-69 266.9 254 59.1
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 1.5e-69 266.9 238 59.2
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 4.3e-69 265.4 193 68.4
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 2.1e-68 263.1 247 59.5
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 3.7e-68 262.3 190 70.0
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 8.1e-68 261.2 195 67.7
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 2.4e-67 259.6 236 61.4
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 3.1e-67 259.2 247 57.1
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 1.2e-66 257.3 248 58.1
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 3.4e-66 255.8 237 58.2
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 4.9e-65 251.9 229 60.3
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 1.1e-64 250.8 216 62.0
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 3.5e-63 245.7 164 73.2
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 1.1e-61 240.7 254 54.3
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 1.9e-61 240.0 218 61.0
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 4.3e-61 238.8 233 55.4
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 2.5e-56 223.0 233 52.8
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 3.2e-56 222.6 111 94.6
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 6.3e-52 208.4 211 57.8
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 3.2e-48 196.1 121 73.6
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 9.4e-48 194.5 120 74.2
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 1.2e-47 194.1 121 75.2
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 1.8e-43 180.3 141 58.9
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 5.0e-41 172.2 192 53.1
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 6.5e-41 171.8 225 42.2
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 1.4e-40 170.6 165 54.5
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 1.5e-37 160.6 202 40.6
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 4.8e-36 155.6 154 47.4
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 8.2e-36 154.8 186 45.2
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 1.6e-31 140.6 173 43.9
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 6.5e-25 118.6 176 36.4
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 3.0e-22 109.8 68 72.1
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 2.7e-15 86.7 162 29.6
Lalb_Chr01g0010151 Lupinus albus HOM05D005690 ORTHO05D007075 1.7e-12 77.4 120 46.7
MCO03G451 Micromonas commoda HOM05D005690 ORTHO05D007075 9.2e-11 71.6 192 31.2
CDE07G0610 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 1.0e-09 68.2 115 40.9
Nn2g10688 Nelumbo nucifera HOM05D005690 ORTHO05D007075 5.2e-06 55.8 108 39.8


User provided reference genes

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