Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28837 Brassica carinata HOM05D006772 ORTHO05D008367 1.8e-63 245.7 123 100.0
C04p64260 Brassica napus HOM05D006772 ORTHO05D008367 7.6e-54 213.8 124 87.9
A04p26870 Brassica napus HOM05D006772 ORTHO05D008367 9.9e-54 213.4 124 87.9
BraA04t18187Z Brassica rapa HOM05D006772 ORTHO05D008367 9.9e-54 213.4 124 87.9
Sp4g17500 Schrenkiella parvula HOM05D006772 ORTHO05D008367 9.9e-54 213.4 124 87.1
A05p10490 Brassica napus HOM05D006772 ORTHO05D008367 2.9e-53 211.8 124 86.3
BraA05t19987Z Brassica rapa HOM05D006772 ORTHO05D008367 2.9e-53 211.8 124 86.3
BolC4t22934H Brassica oleracea HOM05D006772 ORTHO05D008367 3.8e-53 211.5 124 86.3
BcaB02g09453 Brassica carinata HOM05D006772 ORTHO05D008367 3.2e-52 208.4 124 84.7
BcaB02g09458 Brassica carinata HOM05D006772 ORTHO05D008367 3.2e-52 208.4 124 84.7
BcaB02g09462 Brassica carinata HOM05D006772 ORTHO05D008367 3.2e-52 208.4 124 84.7
BcaC02g11632 Brassica carinata HOM05D006772 ORTHO05D008367 3.2e-52 208.4 124 84.7
C04p12890 Brassica napus HOM05D006772 ORTHO05D008367 3.2e-52 208.4 124 84.7
Thhalv10017432m.g Eutrema salsugineum HOM05D006772 ORTHO05D008367 7.1e-52 207.2 124 86.3
BcaC02g07718 Brassica carinata HOM05D006772 ORTHO05D008367 4.6e-51 204.5 124 84.7
BolC4t27910H Brassica oleracea HOM05D006772 ORTHO05D008367 4.6e-51 204.5 124 84.7
BcaB02g09448 Brassica carinata HOM05D006772 ORTHO05D008367 7.8e-51 203.8 124 83.1
AT2G35290 Arabidopsis thaliana HOM05D006772 ORTHO05D008367 6.6e-50 200.7 124 83.9
CARHR129440 Cardamine hirsuta HOM05D006772 ORTHO05D008367 2.8e-48 195.3 124 80.6
Carub.0004s1698 Capsella rubella HOM05D006772 ORTHO05D008367 6.9e-47 190.7 120 82.5
AL4G31320 Arabidopsis lyrata HOM05D006772 ORTHO05D008367 2.2e-45 185.7 116 83.6
Aa31LG9G15310 Aethionema arabicum HOM05D006772 ORTHO05D008367 9.6e-41 170.2 124 72.6
THA.LOC104807956 Tarenaya hassleriana HOM05D006772 ORTHO05D008367 8.7e-34 147.1 122 62.3
Ciclev10033079m.g Citrus clementina HOM05D006772 ORTHO05D008367 6.3e-24 114.4 125 50.4
Aqoxy3G02398 Aquilegia oxysepala HOM05D006772 ORTHO05D008367 8.2e-24 114.0 125 52.0
Potri.003G091400 Populus trichocarpa HOM05D006772 ORTHO05D008367 8.2e-24 114.0 129 50.4
Eucgr.D02187 Eucalyptus grandis HOM05D006772 ORTHO05D008367 4.1e-23 111.7 121 49.6
Gorai.003G181100 Gossypium raimondii HOM05D006772 ORTHO05D008367 1.5e-22 109.8 123 48.0
Sabra03G0061100 Salix brachista HOM05D006772 ORTHO05D008367 1.5e-22 109.8 129 48.1
Gohir.A03G001600 Gossypium hirsutum HOM05D006772 ORTHO05D008367 2.0e-22 109.4 123 47.2
Potri.001G142700 Populus trichocarpa HOM05D006772 ORTHO05D008367 2.0e-22 109.4 130 46.9
Gohir.D03G170700 Gossypium hirsutum HOM05D006772 ORTHO05D008367 2.6e-22 109.0 123 48.0
Peaxi162Scf00460g00052 Petunia axillaris HOM05D006772 ORTHO05D008367 4.5e-22 108.2 125 49.6
Rhsim07G0126400 Rhododendron simsii HOM05D006772 ORTHO05D008367 4.5e-22 108.2 123 51.2
Sabra01G0111500 Salix brachista HOM05D006772 ORTHO05D008367 4.5e-22 108.2 130 47.7
Cc08_g02570 Coffea canephora HOM05D006772 ORTHO05D008367 5.9e-22 107.8 130 48.5
Nn1g00537 Nelumbo nucifera HOM05D006772 ORTHO05D008367 7.6e-22 107.5 127 47.2
Atru.chr6.1734 Acer truncatum HOM05D006772 ORTHO05D008367 1.3e-21 106.7 121 52.1
COL.COLO4_17058 Corchorus olitorius HOM05D006772 ORTHO05D008367 1.3e-21 106.7 126 48.4
Solyc08g077020.1 Solanum lycopersicum HOM05D006772 ORTHO05D008367 1.3e-21 106.7 125 48.0
Nitab4.5_0001666g0010 Nicotiana tabacum HOM05D006772 ORTHO05D008367 1.7e-21 106.3 125 47.2
Nitab4.5_0000804g0080 Nicotiana tabacum HOM05D006772 ORTHO05D008367 2.2e-21 105.9 130 46.9
PGSC0003DMG400043394 Solanum tuberosum HOM05D006772 ORTHO05D008367 2.2e-21 105.9 125 48.8
TWI15G0236 Tripterygium wilfordii HOM05D006772 ORTHO05D008367 2.2e-21 105.9 121 47.9
CANSAT21G2446 Cannabis sativa HOM05D006772 ORTHO05D008367 2.9e-21 105.5 137 41.6
Sopen08g025600 Solanum pennellii HOM05D006772 ORTHO05D008367 2.9e-21 105.5 125 47.2
Haze_08246 Corylus avellana HOM05D006772 ORTHO05D008367 5.0e-21 104.8 128 43.8
Hma1.2p1_0991F.1_g245070 Hydrangea macrophylla HOM05D006772 ORTHO05D008367 5.0e-21 104.8 125 47.2
Duzib205G2036 Durio zibethinus HOM05D006772 ORTHO05D008367 1.1e-20 103.6 127 45.7
CSS0016213 Camellia sinensis var. sinensis HOM05D006772 ORTHO05D008367 1.4e-20 103.2 123 45.5
CSS0038918 Camellia sinensis var. sinensis HOM05D006772 ORTHO05D008367 1.4e-20 103.2 123 45.5
Eucgr.E00285 Eucalyptus grandis HOM05D006772 ORTHO05D008367 1.4e-20 103.2 130 43.8
MD16G1275100 Malus domestica HOM05D006772 ORTHO05D008367 1.4e-20 103.2 130 44.6
Medtr5g014370 Medicago truncatula HOM05D006772 ORTHO05D008367 1.9e-20 102.8 133 45.9
Sc01g0007510 Simmondsia chinensis HOM05D006772 ORTHO05D008367 4.2e-20 101.7 127 44.9
Manes.17G012000 Manihot esculenta HOM05D006772 ORTHO05D008367 5.5e-20 101.3 132 45.5
PGR042G0478 Punica granatum HOM05D006772 ORTHO05D008367 5.5e-20 101.3 131 46.6
Sed0022952 Sechium edule HOM05D006772 ORTHO05D008367 5.5e-20 101.3 129 47.3
Thecc.03G229400 Theobroma cacao HOM05D006772 ORTHO05D008367 5.5e-20 101.3 126 46.0
QL12p005804 Quercus lobata HOM05D006772 ORTHO05D008367 7.2e-20 100.9 128 43.8
arahy.Tifrunner.gnm1.ann1.6N9PAN Arachis hypogaea HOM05D006772 ORTHO05D008367 9.3e-20 100.5 128 45.3
arahy.Tifrunner.gnm1.ann1.WNGN5W Arachis hypogaea HOM05D006772 ORTHO05D008367 9.3e-20 100.5 128 45.3
FvH4_5g21990 Fragaria vesca HOM05D006772 ORTHO05D008367 9.3e-20 100.5 129 44.2
FAN18G1611 Fragaria x ananassa HOM05D006772 ORTHO05D008367 9.3e-20 100.5 129 44.2
FAN08G3182 Fragaria x ananassa HOM05D006772 ORTHO05D008367 1.2e-19 100.1 129 43.4
Psat2g173920 Pisum sativum HOM05D006772 ORTHO05D008367 1.2e-19 100.1 135 42.2
Prupe.5G037100 Prunus persica HOM05D006772 ORTHO05D008367 1.2e-19 100.1 128 43.8
QL12p005837 Quercus lobata HOM05D006772 ORTHO05D008367 1.6e-19 99.8 128 43.8
RcHm_v2.0_Chr7g0209491 Rosa chinensis HOM05D006772 ORTHO05D008367 1.6e-19 99.8 131 43.5
Nn6g33607 Nelumbo nucifera HOM05D006772 ORTHO05D008367 2.1e-19 99.4 123 43.9
ECA240G4560 Erigeron canadensis HOM05D000236 ORTHO05D000192 2.7e-19 99.0 117 43.6
HanXRQChr03g0084031 Helianthus annuus HOM05D006772 ORTHO05D008367 2.7e-19 99.0 133 39.8
Lj2g0019736 Lotus japonicus HOM05D006772 ORTHO05D008367 2.7e-19 99.0 136 44.1
TWI60G0285 Tripterygium wilfordii HOM05D006772 ORTHO05D008367 2.7e-19 99.0 124 46.0
FAN04G3098 Fragaria x ananassa HOM05D006772 ORTHO05D008367 3.6e-19 98.6 129 43.4
Gohir.A12G208800 Gossypium hirsutum HOM05D006772 ORTHO05D008367 3.6e-19 98.6 124 45.2
Gorai.008G227000 Gossypium raimondii HOM05D006772 ORTHO05D008367 3.6e-19 98.6 124 45.2
CiPaw.12G062700 Carya illinoinensis HOM05D006772 ORTHO05D008367 4.6e-19 98.2 134 43.3
Glyma.05G111700 Glycine max HOM05D006772 ORTHO05D008367 4.6e-19 98.2 130 42.3
Gohir.D12G211500 Gossypium hirsutum HOM05D006772 ORTHO05D008367 4.6e-19 98.2 124 45.2
MD06G1033600 Malus domestica HOM05D006772 ORTHO05D008367 6.1e-19 97.8 128 42.2
Cfa012424 Carpinus fangiana HOM05D006772 ORTHO05D008367 7.9e-19 97.4 128 40.6
VMungo0251G2965 Vigna mungo HOM05D006772 ORTHO05D008367 7.9e-19 97.4 131 41.2
FAN13G1934 Fragaria x ananassa HOM05D006772 ORTHO05D008367 1.4e-18 96.7 111 47.7
CsaV3_3G049240 Cucumis sativus L. HOM05D006772 ORTHO05D008367 3.0e-18 95.5 135 43.7
Lalb_Chr05g0213971 Lupinus albus HOM05D006772 ORTHO05D008367 3.0e-18 95.5 130 41.5
Ah.12g054950 Amaranthus hybridus HOM05D006772 ORTHO05D008367 5.1e-18 94.7 114 48.2
Lsat_1_v5_gn_6_78680 Lactuca sativa HOM05D006772 ORTHO05D008367 8.8e-18 94.0 137 40.9
MBI02_g14426_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 8.8e-18 94.0 122 43.4
TPR.G7824 Trifolium pratense HOM05D006772 ORTHO05D008367 8.8e-18 94.0 126 42.9
VMungo1215G2403 Vigna mungo HOM05D006772 ORTHO05D008367 8.8e-18 94.0 131 42.7
Phvul.002G006800 Phaseolus vulgaris HOM05D006772 ORTHO05D008367 1.1e-17 93.6 131 42.0
Sed0027084 Sechium edule HOM05D006772 ORTHO05D008367 1.1e-17 93.6 129 42.6
MELO3C003403.2 Cucumis melo HOM05D006772 ORTHO05D008367 1.5e-17 93.2 135 43.0
Glyma.17G155300 Glycine max HOM05D006772 ORTHO05D008367 1.5e-17 93.2 135 40.7
PGR031G2239 Punica granatum HOM05D006772 ORTHO05D008367 1.9e-17 92.8 92 51.1
TAR375G0733 Trochodendron aralioides HOM05D006772 ORTHO05D008367 1.9e-17 92.8 126 44.4
Ca_24649_v3 Cicer arietinum L. HOM05D006772 ORTHO05D008367 3.3e-17 92.0 128 43.0
DCAR_024967 Daucus carota HOM05D006772 ORTHO05D008367 4.3e-17 91.7 129 42.6
Glyma.11G043000 Glycine max HOM05D006772 ORTHO05D008367 4.3e-17 91.7 128 44.5
Lalb_Chr16g0379141 Lupinus albus HOM05D006772 ORTHO05D008367 5.7e-17 91.3 130 40.8
CDE02G2078 Ceratophyllum demersum HOM05D004438 ORTHO05D005256 4.8e-16 88.2 119 42.9
PGSC0003DMG400036785 Solanum tuberosum HOM05D006772 ORTHO05D008367 8.2e-16 87.4 88 46.6
Lj4g0015139 Lotus japonicus HOM05D006772 ORTHO05D008367 1.1e-15 87.0 133 39.8
CDE08G0662 Ceratophyllum demersum HOM05D006772 ORTHO05D008367 1.8e-15 86.3 118 43.2
MBI05_g46462_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 2.0e-14 82.8 108 42.6
Gohir.A11G030300 Gossypium hirsutum HOM05D006772 ORTHO05D008367 5.9e-14 81.3 129 38.8
Lj4g0019114 Lotus japonicus HOM05D006772 ORTHO05D008367 2.2e-13 79.3 137 35.0
ATR0564G457 Amborella trichopoda HOM05D006772 ORTHO05D008367 8.5e-13 77.4 137 37.2
SEGI_37864 Sequoiadendron giganteum HOM05D006772 ORTHO05D008367 5.5e-12 74.7 95 40.0
Zm00001eb402290 Zea mays HOM05D006772 ORTHO05D008367 1.6e-11 73.2 116 38.8
HPP92_011259 Vanilla planifolia HOM05D006772 ORTHO05D008367 2.1e-11 72.8 130 37.7
Gohir.D11G028900 Gossypium hirsutum HOM05D006772 ORTHO05D008367 2.7e-11 72.4 102 43.1
Dinv28946 Davidia involucrata HOM05D006772 ORTHO05D008367 3.3e-09 65.5 97 44.3
EL10Ac5g12135 Beta vulgaris HOM05D003523 ORTHO05D008367 5.7e-09 64.7 98 39.8
Os03g0170100 Oryza sativa ssp. japonica HOM05D006772 ORTHO05D008367 7.4e-09 64.3 117 35.9
Gorai.007G031500 Gossypium raimondii HOM05D006772 ORTHO05D008367 9.7e-09 63.9 71 46.5
CiPaw.11G092300 Carya illinoinensis HOM05D006772 ORTHO05D008367 1.7e-08 63.2 122 35.2
Peaxi162Scf00102g00514 Petunia axillaris HOM05D006772 ORTHO05D008367 4.8e-08 61.6 125 38.4


User provided reference genes

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