Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28816 Brassica carinata HOM05D004145 ORTHO05D004879 3.1e-119 431.8 218 100.0
BcaB02g09494 Brassica carinata HOM05D004145 ORTHO05D004879 3.5e-102 375.2 219 89.5
BolC4t22972H Brassica oleracea HOM05D004145 ORTHO05D004879 1.7e-101 372.9 219 88.6
BcaC02g11578 Brassica carinata HOM05D004145 ORTHO05D004879 3.9e-101 371.7 219 88.1
C04p13820 Brassica napus HOM05D004145 ORTHO05D004879 3.9e-101 371.7 219 88.1
Sp4g17260 Schrenkiella parvula HOM05D004145 ORTHO05D004879 5.0e-101 371.3 221 86.4
A05p10730 Brassica napus HOM05D004145 ORTHO05D004879 8.6e-101 370.5 219 87.7
BraA05t20017Z Brassica rapa HOM05D004145 ORTHO05D004879 1.1e-100 370.2 219 87.7
AL4G30980 Arabidopsis lyrata HOM05D004145 ORTHO05D004879 9.8e-97 357.1 220 84.5
Carub.0004s1666 Capsella rubella HOM05D004145 ORTHO05D004879 1.7e-96 356.3 222 83.8
Thhalv10016297m.g Eutrema salsugineum HOM05D004145 ORTHO05D004879 3.7e-96 355.1 214 84.6
AT2G34970 Arabidopsis thaliana HOM05D004145 ORTHO05D004879 1.1e-95 353.6 221 83.3
CARHR129130 Cardamine hirsuta HOM05D004145 ORTHO05D004879 2.0e-94 349.4 222 82.4
Aa31sc654G10 Aethionema arabicum HOM05D004145 ORTHO05D004879 8.6e-93 344.0 220 80.9
THA.LOC104805832 Tarenaya hassleriana HOM05D004145 ORTHO05D004879 3.3e-84 315.5 218 75.7
AL7G36090 Arabidopsis lyrata HOM05D004145 ORTHO05D004879 1.7e-80 303.1 224 74.6
AT4G18300 Arabidopsis thaliana HOM05D004145 ORTHO05D004879 4.9e-80 301.6 224 73.7
Ciclev10019027m.g Citrus clementina HOM05D004145 ORTHO05D004879 8.6e-77 290.8 224 67.4
Atru.chr2.638 Acer truncatum HOM05D004145 ORTHO05D004879 1.1e-76 290.4 218 66.5
Carub.0007s2297 Capsella rubella HOM05D004145 ORTHO05D004879 4.3e-76 288.5 216 71.8
Manes.09G159400 Manihot esculenta HOM05D004145 ORTHO05D004879 4.3e-76 288.5 218 67.9
Glyma.03G243100 Glycine max HOM05D004145 ORTHO05D004879 2.8e-75 285.8 218 67.9
VMungo0540G0740 Vigna mungo HOM05D004145 ORTHO05D004879 2.8e-75 285.8 218 68.3
Cpa.g.sc117.30 Carica papaya HOM05D004145 ORTHO05D004879 4.7e-75 285.0 218 66.5
Phvul.006G097200 Phaseolus vulgaris HOM05D004145 ORTHO05D004879 1.1e-74 283.9 218 67.4
Haze_04291 Corylus avellana HOM05D004145 ORTHO05D004879 1.4e-74 283.5 218 66.1
Thecc.05G254300 Theobroma cacao HOM05D004145 ORTHO05D004879 1.4e-74 283.5 219 68.0
QL03p001164 Quercus lobata HOM05D004145 ORTHO05D004879 1.8e-74 283.1 218 67.0
ClCG07G016490 Citrullus lanatus HOM05D004145 ORTHO05D004879 2.4e-74 282.7 218 66.5
MELO3C004345.2 Cucumis melo HOM05D004145 ORTHO05D004879 2.4e-74 282.7 218 66.5
BcaB02g09493 Brassica carinata HOM05D004145 ORTHO05D004879 3.1e-74 282.3 165 88.5
RcHm_v2.0_Chr6g0273391 Rosa chinensis HOM05D004145 ORTHO05D004879 3.1e-74 282.3 218 67.4
Gohir.A13G101100 Gossypium hirsutum HOM05D004145 ORTHO05D004879 4.0e-74 282.0 219 66.7
Gohir.D13G104600 Gossypium hirsutum HOM05D004145 ORTHO05D004879 4.0e-74 282.0 219 66.7
CsaV3_2G004470 Cucumis sativus L. HOM05D004145 ORTHO05D004879 5.2e-74 281.6 218 66.1
Prupe.6G335900 Prunus persica HOM05D004145 ORTHO05D004879 8.9e-74 280.8 218 66.1
Gorai.013G117100 Gossypium raimondii HOM05D004145 ORTHO05D004879 1.5e-73 280.0 219 66.2
MD00G1051200 Malus domestica HOM05D004145 ORTHO05D004879 1.5e-73 280.0 218 66.1
COL.COLO4_36032 Corchorus olitorius HOM05D004145 ORTHO05D004879 2.0e-73 279.6 219 67.1
Haze_14654 Corylus avellana HOM05D004145 ORTHO05D004879 2.6e-73 279.3 218 65.6
TWI56G0710 Tripterygium wilfordii HOM05D004145 ORTHO05D004879 2.6e-73 279.3 218 65.6
FAN20G3151 Fragaria x ananassa HOM05D004145 ORTHO05D004879 3.4e-73 278.9 218 66.1
FAN27G3237 Fragaria x ananassa HOM05D004145 ORTHO05D004879 4.4e-73 278.5 218 65.6
CANSAT54G2505 Cannabis sativa HOM05D004145 ORTHO05D004879 5.8e-73 278.1 218 65.6
MD12G1232500 Malus domestica HOM05D004145 ORTHO05D004879 9.9e-73 277.3 218 65.1
Peaxi162Scf00225g00424 Petunia axillaris HOM05D004145 ORTHO05D004879 1.7e-72 276.6 215 65.1
Medtr7g115610 Medicago truncatula HOM05D004145 ORTHO05D004879 2.2e-72 276.2 217 65.0
FAN15G1727 Fragaria x ananassa HOM05D004145 ORTHO05D004879 2.9e-72 275.8 218 65.1
Lalb_Chr15g0076981 Lupinus albus HOM05D004145 ORTHO05D004879 2.9e-72 275.8 218 64.7
Ca_12868_v3 Cicer arietinum L. HOM05D004145 ORTHO05D004879 4.9e-72 275.0 220 66.8
FvH4_2g12670 Fragaria vesca HOM05D004145 ORTHO05D004879 6.4e-72 274.6 218 64.2
Glyma.19G240600 Glycine max HOM05D004145 ORTHO05D004879 1.4e-71 273.5 218 66.5
TWI12G1275 Tripterygium wilfordii HOM05D004145 ORTHO05D004879 1.4e-71 273.5 218 64.2
EL10Ac4g09963 Beta vulgaris HOM05D004145 ORTHO05D004879 2.4e-71 272.7 214 64.5
Lj5g0001865 Lotus japonicus HOM05D004145 ORTHO05D004879 4.2e-71 271.9 218 65.1
GSVIVG01026774001 Vitis vinifera HOM05D004145 ORTHO05D004879 7.1e-71 271.2 215 64.7
PGR004G0092 Punica granatum HOM05D004145 ORTHO05D004879 9.3e-71 270.8 223 63.2
Dinv09830 Davidia involucrata HOM05D004145 ORTHO05D004879 1.2e-70 270.4 217 65.4
RcHm_v2.0_Chr2g0129391 Rosa chinensis HOM05D004145 ORTHO05D004879 1.2e-70 270.4 218 64.2
Potri.005G045200 Populus trichocarpa HOM05D004145 ORTHO05D004879 1.6e-70 270.0 215 65.6
CSS0045127 Camellia sinensis var. sinensis HOM05D004145 ORTHO05D004879 3.5e-70 268.9 216 62.5
Sed0004488 Sechium edule HOM05D004145 ORTHO05D004879 3.5e-70 268.9 217 64.1
Actinidia30923 Actinidia chinensis HOM05D004145 ORTHO05D004879 7.8e-70 267.7 218 62.8
CSS0025723 Camellia sinensis var. sinensis HOM05D004145 ORTHO05D004879 1.0e-69 267.3 216 62.0
Oeu028497.4 Olea europaea HOM05D004145 ORTHO05D004879 1.0e-69 267.3 214 63.6
Sopen01g041760 Solanum pennellii HOM05D004145 ORTHO05D004879 1.7e-69 266.5 218 62.8
CAN.G134.208 Capsicum annuum HOM05D004145 ORTHO05D004879 2.3e-69 266.2 223 62.8
Nitab4.5_0000245g0100 Nicotiana tabacum HOM05D004145 ORTHO05D004879 3.0e-69 265.8 218 62.8
Solyc01g098180.3 Solanum lycopersicum HOM05D004145 ORTHO05D004879 3.0e-69 265.8 218 62.4
Nn2g12613 Nelumbo nucifera HOM05D004145 ORTHO05D004879 3.9e-69 265.4 214 62.1
Nitab4.5_0010351g0020 Nicotiana tabacum HOM05D004145 ORTHO05D004879 5.1e-69 265.0 218 62.8
MSTRG.2685 Avicennia marina HOM05D004145 ORTHO05D004879 8.7e-69 264.2 219 63.0
SGA_v2.0_scaffold80G25752 Striga asiatica HOM05D004145 ORTHO05D004879 8.7e-69 264.2 213 63.8
Hma1.2p1_1636F.1_g294830 Hydrangea macrophylla HOM05D004145 ORTHO05D004879 1.5e-68 263.5 216 61.6
Eucgr.H04421 Eucalyptus grandis HOM05D004145 ORTHO05D004879 1.9e-68 263.1 219 62.6
Aqoxy2G04020 Aquilegia oxysepala HOM05D004145 ORTHO05D004879 3.3e-68 262.3 216 63.0
MBI12_g33070_MAGBIO Magnolia biondii HOM05D004145 ORTHO05D004879 4.3e-68 261.9 216 63.4
Sc16g0010400 Simmondsia chinensis HOM05D004145 ORTHO05D004879 7.3e-68 261.2 218 60.6
Ah.06g195470 Amaranthus hybridus HOM05D004145 ORTHO05D004879 1.3e-67 260.4 214 60.7
arahy.Tifrunner.gnm1.ann1.N9EJ2X Arachis hypogaea HOM05D004145 ORTHO05D004879 1.6e-67 260.0 224 62.1
vmacro06192 Vaccinium macrocarpon HOM05D004145 ORTHO05D004879 2.1e-67 259.6 231 59.7
AUR62006653 Chenopodium quinoa HOM05D004145 ORTHO05D004879 6.2e-67 258.1 207 62.8
ECA246G2136 Erigeron canadensis HOM05D004145 ORTHO05D004879 1.1e-66 257.3 218 61.5
PSO675G1731 Papaver somniferum HOM05D004145 ORTHO05D004879 1.4e-66 256.9 216 62.0
AUR62000308 Chenopodium quinoa HOM05D004145 ORTHO05D004879 1.8e-66 256.5 207 62.3
FAN24G1676 Fragaria x ananassa HOM05D004145 ORTHO05D004879 1.8e-66 256.5 267 52.4
Migut.H01121 Erythranthe guttata HOM05D004145 ORTHO05D004879 2.4e-66 256.1 213 62.4
unitig_748.g8566 Utricularia gibba HOM05D004145 ORTHO05D004879 2.4e-66 256.1 213 62.4
PSO017G5505 Papaver somniferum HOM05D004145 ORTHO05D004879 6.9e-66 254.6 216 61.6
CDE05G0178 Ceratophyllum demersum HOM05D004145 ORTHO05D004879 9.0e-66 254.2 212 62.3
Cc02_g32210 Coffea canephora HOM05D004145 ORTHO05D004879 1.5e-65 253.4 201 65.7
AT3G02270 Arabidopsis thaliana HOM05D004145 ORTHO05D004879 2.0e-65 253.1 218 66.1
Lsat_1_v5_gn_6_96941 Lactuca sativa HOM05D004145 ORTHO05D004879 2.0e-65 253.1 213 62.4
SHI18260 Sapria himalayana HOM05D004145 ORTHO05D004879 4.5e-65 251.9 205 63.4
TPR.G33341 Trifolium pratense HOM05D004145 ORTHO05D004879 7.6e-65 251.1 226 60.2
GSVIVG01032341001 Vitis vinifera HOM05D004145 ORTHO05D004879 1.3e-64 250.4 198 65.7
HanXRQChr15g0469811 Helianthus annuus HOM05D004145 ORTHO05D004879 3.8e-64 248.8 218 59.6
ATR0564G152 Amborella trichopoda HOM05D004145 ORTHO05D004879 1.4e-63 246.9 218 59.2
DCAR_006415 Daucus carota HOM05D004145 ORTHO05D004879 1.2e-62 243.8 235 56.2
SMO356G0330 Selaginella moellendorffii HOM05D004145 ORTHO05D004879 1.1e-60 237.3 217 55.3
arahy.Tifrunner.gnm1.ann1.Q65QWU Arachis hypogaea HOM05D004145 ORTHO05D004879 2.5e-60 236.1 222 59.5
Zm00001eb258570 Zea mays HOM05D004145 ORTHO05D004879 3.6e-59 232.3 199 59.8
Os02g0812400 Oryza sativa ssp. japonica HOM05D004145 ORTHO05D004879 1.8e-58 229.9 211 55.5
AagrBONN_evm.TU.Sc2ySwM_228.295 Anthoceros agrestis HOM05D004145 ORTHO05D004879 2.4e-58 229.6 195 57.9
RcHm_v2.0_Chr4g0430791 Rosa chinensis HOM05D004145 ORTHO05D004879 1.2e-57 227.3 228 57.5
Pp3c1_20030 Physcomitrium patens HOM05D004145 ORTHO05D004879 8.4e-56 221.1 204 54.9
Mapoly0056s0115 Marchantia polymorpha HOM05D004145 ORTHO05D004879 1.4e-55 220.3 195 54.9
GSVIVG01032295001 Vitis vinifera HOM05D004145 ORTHO05D004879 1.4e-55 220.3 174 64.9
AL3G11540 Arabidopsis lyrata HOM05D004145 ORTHO05D004879 2.4e-55 219.5 199 65.8
FvH4_4g24061 Fragaria vesca HOM05D004145 ORTHO05D004879 2.4e-55 219.5 221 54.3
Haze_00048 Corylus avellana HOM05D000222 ORTHO05D004879 2.1e-54 216.5 173 63.6
FAN17G0778 Fragaria x ananassa HOM05D004145 ORTHO05D004879 4.6e-54 215.3 221 53.4
Hund07348 Selenicereus undatus HOM05D004145 ORTHO05D004879 1.0e-53 214.2 333 39.3
Lj9A674T60 Lonicera japonica HOM05D004145 ORTHO05D004879 3.3e-52 209.1 199 54.3
Dinv04277 Davidia involucrata HOM05D004145 ORTHO05D004879 4.3e-52 208.8 164 64.6
Rhsim03G0245100 Rhododendron simsii HOM05D004145 ORTHO05D004879 9.0e-50 201.1 183 56.8
Psat0s1551g0280 Pisum sativum HOM05D004145 ORTHO05D004879 5.5e-47 191.8 147 70.7
PSO541G4045 Papaver somniferum HOM05D004145 ORTHO05D004879 7.1e-47 191.4 202 52.5
PRCOL_00001177 Prasinoderma coloniale HOM05D004145 ORTHO05D004879 9.3e-47 191.0 203 49.3
Lsat_1_v5_gn_3_33301 Lactuca sativa HOM05D004145 ORTHO05D004879 6.0e-46 188.3 209 51.2
PSO675G6749 Papaver somniferum HOM05D004145 ORTHO05D004879 6.3e-43 178.3 210 49.5
MCO16G505 Micromonas commoda HOM05D004145 ORTHO05D004879 6.9e-42 174.9 189 49.7
Cre12.g502200 Chlamydomonas reinhardtii HOM05D004145 ORTHO05D004879 1.6e-38 163.7 188 47.3
PSO339G4752 Papaver somniferum HOM05D004145 ORTHO05D004879 3.6e-38 162.5 228 45.6
TPR.G28883 Trifolium pratense HOM05D004145 ORTHO05D004879 7.9e-38 161.4 117 71.8
FAN07G1263 Fragaria x ananassa HOM05D000016 ORTHO05D004879 1.9e-36 156.8 197 47.2
HPP92_016926 Vanilla planifolia HOM05D004145 ORTHO05D004879 5.7e-36 155.2 202 44.1
Dinv01337 Davidia involucrata HOM05D004145 ORTHO05D004879 7.4e-36 154.8 119 68.9
HPP92_016860 Vanilla planifolia HOM05D004145 ORTHO05D004879 5.3e-34 148.7 125 63.2
CBR_g23483 Chara braunii HOM05D004145 ORTHO05D004879 4.5e-33 145.6 230 37.8
ECA246G4181 Erigeron canadensis HOM05D004145 ORTHO05D004879 9.7e-28 127.9 145 51.0
SEGI_02297 Sequoiadendron giganteum HOM05D004145 ORTHO05D004879 2.7e-22 109.8 79 60.8
Sabra16G0314500 Salix brachista HOM05D004145 ORTHO05D004879 3.0e-21 106.3 119 52.9
FvH4_4g24260 Fragaria vesca HOM05D004145 ORTHO05D004879 8.8e-21 104.8 111 49.5
Sabra16G0314400 Salix brachista HOM05D004145 ORTHO05D004879 1.5e-20 104.0 80 67.5
TPR.G33351 Trifolium pratense HOM05D004145 ORTHO05D004879 1.5e-20 104.0 73 69.9
CARHR177970 Cardamine hirsuta HOM05D004145 ORTHO05D004879 3.5e-17 92.8 103 55.3
TPR.G20882 Trifolium pratense HOM05D004145 ORTHO05D004879 2.2e-16 90.1 63 71.4
BolC4t27888H Brassica oleracea HOM05D004145 ORTHO05D004879 8.2e-11 71.6 167 35.3
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 1.3e-08 64.3 136 29.4
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 1.7e-08 63.9 180 26.1
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 1.5e-07 60.8 186 29.6
MSTRG.23977 Avicennia marina HOM05D002643 ORTHO05D002984 5.5e-07 58.9 194 26.8
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 7.2e-07 58.5 206 27.2
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 7.2e-07 58.5 206 27.2
Nitab4.5_0000002g0580 Nicotiana tabacum HOM05D002643 ORTHO05D002984 7.2e-07 58.5 202 25.2
unitig_27.g25069 Utricularia gibba HOM05D002357 ORTHO05D002676 7.2e-07 58.5 165 24.8
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 9.4e-07 58.2 183 28.4
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 9.4e-07 58.2 183 28.4
QL02p078587 Quercus lobata HOM05D002643 ORTHO05D002984 9.4e-07 58.2 194 26.8
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 1.2e-06 57.8 206 27.2
Haze_14618 Corylus avellana HOM05D002643 ORTHO05D002984 1.6e-06 57.4 194 27.3
DCAR_013965 Daucus carota HOM05D002643 ORTHO05D002984 1.6e-06 57.4 194 26.8
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.6e-06 57.4 206 26.7
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 2.1e-06 57.0 206 27.2
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 2.1e-06 57.0 185 26.5
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 2.7e-06 56.6 201 24.4
CiPaw.01G292000 Carya illinoinensis HOM05D002357 ORTHO05D002676 3.6e-06 56.2 165 24.8
HanXRQChr09g0265791 Helianthus annuus HOM05D002643 ORTHO05D002984 3.6e-06 56.2 194 27.3
SHI35815 Sapria himalayana HOM05D002643 ORTHO05D002984 3.6e-06 56.2 175 28.0
Thhalv10027808m.g Eutrema salsugineum HOM05D002643 ORTHO05D002984 4.7e-06 55.8 192 25.5
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 4.7e-06 55.8 185 27.6
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 4.7e-06 55.8 111 34.2
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 4.7e-06 55.8 117 32.5
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 4.7e-06 55.8 183 26.8
AagrBONN_evm.TU.Sc2ySwM_117.1509 Anthoceros agrestis HOM05D002357 ORTHO05D002676 6.1e-06 55.5 165 24.8
AagrBONN_evm.TU.Sc2ySwM_228.909 Anthoceros agrestis HOM05D002357 ORTHO05D002676 6.1e-06 55.5 165 25.5
BcaB06g27744 Brassica carinata HOM05D002643 ORTHO05D002984 6.1e-06 55.5 192 25.5
C03p26380 Brassica napus HOM05D002357 ORTHO05D002676 6.1e-06 55.5 171 24.6
BraA03t11460Z Brassica rapa HOM05D002357 ORTHO05D002676 6.1e-06 55.5 173 23.7
Mapoly0034s0043 Marchantia polymorpha HOM05D002357 ORTHO05D002676 6.1e-06 55.5 166 27.7
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 6.1e-06 55.5 186 27.4
SMO143G0026 Selaginella moellendorffii HOM05D002357 ORTHO05D002676 6.1e-06 55.5 165 25.5
CSS0004387 Camellia sinensis var. sinensis HOM05D002643 ORTHO05D002984 8.0e-06 55.1 193 27.5
CSS0023021 Camellia sinensis var. sinensis HOM05D002643 ORTHO05D002984 8.0e-06 55.1 193 27.5
Cpa.g.sc33.165 Carica papaya HOM05D002357 ORTHO05D002676 8.0e-06 55.1 150 27.3
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 8.0e-06 55.1 188 26.1
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 8.0e-06 55.1 183 28.4
Lalb_Chr04g0250981 Lupinus albus HOM05D002357 ORTHO05D002676 8.0e-06 55.1 165 24.8
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 8.0e-06 55.1 183 25.7
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 8.0e-06 55.1 191 27.7
Sed0006207 Sechium edule HOM05D002357 ORTHO05D002676 8.0e-06 55.1 165 24.8
TAR633G2071 Trochodendron aralioides HOM05D002357 ORTHO05D002676 8.0e-06 55.1 165 24.8


User provided reference genes

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