Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28814 Brassica carinata HOM05D005754 ORTHO05D006843 6.9e-37 156.8 77 100.0
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 7.4e-15 83.6 121 43.0
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 9.7e-15 83.2 195 33.8
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 1.6e-14 82.4 195 33.8
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 2.2e-14 82.0 195 34.4
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 3.7e-14 81.3 195 33.3
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 1.4e-13 79.3 77 54.5
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 1.8e-13 79.0 195 33.3
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 1.8e-13 79.0 195 33.3
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 2.4e-13 78.6 194 33.0
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 4.1e-13 77.8 195 33.3
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 2.0e-12 75.5 196 32.1
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 2.0e-12 75.5 57 68.4
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 4.5e-12 74.3 57 68.4
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 1.0e-11 73.2 183 33.3
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 1.3e-11 72.8 57 64.9
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 2.9e-11 71.6 170 31.8
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 2.9e-11 71.6 194 30.9
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 2.9e-11 71.6 194 30.9
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 2.9e-11 71.6 57 64.9
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 2.9e-11 71.6 57 63.2
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 3.8e-11 71.2 57 66.7
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 3.8e-11 71.2 56 66.1
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 3.8e-11 71.2 195 30.8
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 3.8e-11 71.2 195 31.3
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 5.0e-11 70.9 56 66.1
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 6.5e-11 70.5 57 66.7
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 6.5e-11 70.5 57 64.9
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 6.5e-11 70.5 57 64.9
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 1.1e-10 69.7 57 64.9
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 1.4e-10 69.3 57 61.4
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 1.4e-10 69.3 57 64.9
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 1.9e-10 68.9 57 61.4
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 1.9e-10 68.9 195 30.8
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 2.5e-10 68.6 57 64.9
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 2.5e-10 68.6 56 64.3
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 3.2e-10 68.2 169 32.5
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 4.2e-10 67.8 195 30.3
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 5.5e-10 67.4 57 63.2
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 7.2e-10 67.0 57 63.2
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 7.2e-10 67.0 57 59.6
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 7.2e-10 67.0 57 61.4
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 9.4e-10 66.6 195 29.7
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 9.4e-10 66.6 195 29.7
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 1.2e-09 66.2 57 61.4
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 1.2e-09 66.2 57 61.4
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 1.2e-09 66.2 56 60.7
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 1.6e-09 65.9 57 63.2
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 1.6e-09 65.9 57 63.2
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 1.6e-09 65.9 57 59.6
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 1.6e-09 65.9 57 59.6
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 1.6e-09 65.9 57 64.9
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 2.1e-09 65.5 57 63.2
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 2.1e-09 65.5 57 63.2
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 3.6e-09 64.7 57 59.6
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 3.6e-09 64.7 57 57.9
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 4.6e-09 64.3 55 58.2
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 6.1e-09 63.9 57 56.1
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 6.1e-09 63.9 57 63.2
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 6.1e-09 63.9 57 63.2
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 6.1e-09 63.9 57 63.2
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 7.9e-09 63.5 56 55.4
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 1.0e-08 63.2 57 56.1
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 1.0e-08 63.2 57 56.1
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 1.0e-08 63.2 56 55.4
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 1.4e-08 62.8 57 56.1
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.4e-08 62.8 57 56.1
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 1.4e-08 62.8 57 56.1
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 1.4e-08 62.8 56 58.9
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 1.8e-08 62.4 65 53.8
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 1.8e-08 62.4 65 53.8
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.8e-08 62.4 57 57.9
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 1.8e-08 62.4 57 57.9
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 1.8e-08 62.4 57 57.9
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 2.3e-08 62.0 26 100.0
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 2.3e-08 62.0 57 54.4
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.3e-08 62.0 57 54.4
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 2.3e-08 62.0 55 56.4
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 2.3e-08 62.0 56 58.9
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 3.0e-08 61.6 57 56.1
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 3.0e-08 61.6 57 56.1
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 3.9e-08 61.2 57 56.1
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 3.9e-08 61.2 56 57.1
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 3.9e-08 61.2 56 57.1
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 5.1e-08 60.8 56 57.1
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 5.1e-08 60.8 57 56.1
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 6.7e-08 60.5 63 52.4
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 6.7e-08 60.5 57 56.1
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 6.7e-08 60.5 57 54.4
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 6.7e-08 60.5 56 55.4
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 6.7e-08 60.5 56 55.4
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 6.7e-08 60.5 26 96.2
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 8.8e-08 60.1 56 57.1
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 8.8e-08 60.1 56 57.1
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 1.1e-07 59.7 56 57.1
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.1e-07 59.7 57 52.6
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 1.1e-07 59.7 65 50.8
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 1.5e-07 59.3 56 53.6
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 2.0e-07 58.9 57 52.6
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 2.0e-07 58.9 57 54.4
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 2.6e-07 58.5 56 53.6
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 4.4e-07 57.8 57 52.6
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 4.4e-07 57.8 56 48.2
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 5.7e-07 57.4 26 88.5
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 9.7e-07 56.6 57 50.9
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 9.7e-07 56.6 56 53.6
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 1.3e-06 56.2 57 49.1
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 1.3e-06 56.2 50 54.0
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 2.2e-06 55.5 56 55.4
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 2.8e-06 55.1 23 91.3
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 3.7e-06 54.7 57 47.4
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 3.7e-06 54.7 57 47.4
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 3.7e-06 54.7 57 47.4
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 4.8e-06 54.3 23 95.7


User provided reference genes

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