Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28812 Brassica carinata HOM05D003281 ORTHO05D004128 1.3e-48 196.1 98 100.0
AT2G35040 Arabidopsis thaliana HOM05D003281 ORTHO05D004128 1.1e-15 86.7 57 78.9
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 1.1e-15 86.7 79 62.0
Carub.0004s1674 Capsella rubella HOM05D003281 ORTHO05D004128 3.2e-15 85.1 57 77.2
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 4.2e-15 84.7 57 77.2
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 4.2e-15 84.7 57 77.2
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 4.2e-15 84.7 57 77.2
Thhalv10016407m.g Eutrema salsugineum HOM05D003281 ORTHO05D004128 9.4e-15 83.6 57 75.4
BcaB02g09485 Brassica carinata HOM05D003281 ORTHO05D004128 1.2e-14 83.2 57 75.4
AL4G31070 Arabidopsis lyrata HOM05D003281 ORTHO05D004128 2.1e-14 82.4 57 73.7
THA.LOC104798558 Tarenaya hassleriana HOM05D003281 ORTHO05D004128 4.7e-14 81.3 64 67.2
CARHR129210 Cardamine hirsuta HOM05D003281 ORTHO05D004128 1.0e-13 80.1 57 73.7
THA.LOC104814352 Tarenaya hassleriana HOM05D003281 ORTHO05D004128 1.0e-13 80.1 57 71.9
vmacro14667 Vaccinium macrocarpon HOM05D003281 ORTHO05D004128 1.0e-13 80.1 64 65.6
Cc01_g05380 Coffea canephora HOM05D003281 ORTHO05D004128 1.4e-13 79.7 70 61.4
Actinidia11434 Actinidia chinensis HOM05D003281 ORTHO05D004128 1.8e-13 79.3 64 65.6
Cc02_g09680 Coffea canephora HOM05D003281 ORTHO05D004128 3.0e-13 78.6 64 64.1
Rhsim04G0114800 Rhododendron simsii HOM05D003281 ORTHO05D004128 3.0e-13 78.6 57 70.2
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 4.0e-13 78.2 57 70.2
CAN.G514.6 Capsicum annuum HOM05D003281 ORTHO05D004128 4.0e-13 78.2 64 62.5
Cc02_g28610 Coffea canephora HOM05D003281 ORTHO05D004128 4.0e-13 78.2 64 64.1
TAR626G1141 Trochodendron aralioides HOM05D003281 ORTHO05D004128 6.8e-13 77.4 64 64.1
Os08g0206600 Oryza sativa ssp. japonica HOM05D003281 ORTHO05D004128 8.8e-13 77.0 64 62.5
Rhsim01G0054700 Rhododendron simsii HOM05D003281 ORTHO05D004128 8.8e-13 77.0 63 65.1
DCAR_001294 Daucus carota HOM05D003281 ORTHO05D004128 1.2e-12 76.6 64 62.5
MBI14_g44727_MAGBIO Magnolia biondii HOM05D003281 ORTHO05D004128 1.2e-12 76.6 63 65.1
Peaxi162Scf00199g00516 Petunia axillaris HOM05D003281 ORTHO05D004128 1.5e-12 76.3 64 60.9
Rhsim01G0111500 Rhododendron simsii HOM05D003281 ORTHO05D004128 1.5e-12 76.3 64 62.5
EL10Ac1g01734 Beta vulgaris HOM05D003281 ORTHO05D004128 2.0e-12 75.9 65 60.0
AUR62015011 Chenopodium quinoa HOM05D003281 ORTHO05D004128 2.0e-12 75.9 64 62.5
Duzib132G1085 Durio zibethinus HOM05D003281 ORTHO05D004128 2.0e-12 75.9 64 62.5
Eucgr.A00708 Eucalyptus grandis HOM05D003281 ORTHO05D004128 2.0e-12 75.9 65 61.5
SEGI_14905 Sequoiadendron giganteum HOM05D003281 ORTHO05D004128 2.0e-12 75.9 65 60.0
Solyc08g075160.3 Solanum lycopersicum HOM05D003281 ORTHO05D004128 2.0e-12 75.9 64 60.9
Nitab4.5_0000443g0070 Nicotiana tabacum HOM05D003281 ORTHO05D004128 2.6e-12 75.5 64 60.9
Nitab4.5_0006246g0040 Nicotiana tabacum HOM05D003281 ORTHO05D004128 2.6e-12 75.5 64 60.9
SalBow1G2706 Salvia bowleyana HOM05D003281 ORTHO05D004128 2.6e-12 75.5 65 61.5
SalBow3G0238 Salvia bowleyana HOM05D003281 ORTHO05D004128 2.6e-12 75.5 65 61.5
Nn7g38195 Nelumbo nucifera HOM05D003281 ORTHO05D004128 3.4e-12 75.1 64 62.5
PGR004G1969 Punica granatum HOM05D003281 ORTHO05D004128 3.4e-12 75.1 64 60.9
RcHm_v2.0_Chr1g0326741 Rosa chinensis HOM05D003281 ORTHO05D004128 3.4e-12 75.1 64 62.5
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 3.4e-12 75.1 64 62.5
PGSC0003DMG400020817 Solanum tuberosum HOM05D003281 ORTHO05D004128 3.4e-12 75.1 64 60.9
Ah.01g022040 Amaranthus hybridus HOM05D003281 ORTHO05D004128 4.4e-12 74.7 58 65.5
Gohir.D01G111800 Gossypium hirsutum HOM05D003281 ORTHO05D004128 4.4e-12 74.7 64 60.9
Gorai.002G136700 Gossypium raimondii HOM05D003281 ORTHO05D004128 4.4e-12 74.7 64 60.9
MD12G1033700 Malus domestica HOM05D003281 ORTHO05D004128 4.4e-12 74.7 64 60.9
MD14G1035300 Malus domestica HOM05D003281 ORTHO05D004128 4.4e-12 74.7 64 60.9
Psat5g186600 Pisum sativum HOM05D003281 ORTHO05D004128 4.4e-12 74.7 57 64.9
Hund10057 Selenicereus undatus HOM05D003281 ORTHO05D004128 4.4e-12 74.7 65 60.0
TPR.G1398 Trifolium pratense HOM05D003281 ORTHO05D004128 4.4e-12 74.7 57 66.7
TPR.G6549 Trifolium pratense HOM05D003281 ORTHO05D004128 4.4e-12 74.7 57 66.7
Migut.B00724 Erythranthe guttata HOM05D003281 ORTHO05D004128 5.7e-12 74.3 64 60.9
Psat5g222920 Pisum sativum HOM05D003281 ORTHO05D004128 5.7e-12 74.3 57 64.9
Potri.010G114400 Populus trichocarpa HOM05D003281 ORTHO05D004128 5.7e-12 74.3 64 60.9
EL10Ac5g10906 Beta vulgaris HOM05D003281 ORTHO05D004128 7.5e-12 73.9 65 60.0
Duzib248G1352 Durio zibethinus HOM05D003281 ORTHO05D004128 7.5e-12 73.9 64 60.9
QL11p013631 Quercus lobata HOM05D003281 ORTHO05D004128 7.5e-12 73.9 64 60.9
RcHm_v2.0_Chr2g0124681 Rosa chinensis HOM05D003281 ORTHO05D004128 7.5e-12 73.9 64 60.9
Thecc.02G006200 Theobroma cacao HOM05D003281 ORTHO05D004128 7.5e-12 73.9 64 59.4
GSVIVG01012120001 Vitis vinifera HOM05D003281 ORTHO05D004128 7.5e-12 73.9 64 62.5
Ciclev10014669m.g Citrus clementina HOM05D003281 ORTHO05D004128 9.8e-12 73.6 64 62.5
COL.COLO4_17637 Corchorus olitorius HOM05D003281 ORTHO05D004128 9.8e-12 73.6 64 60.9
Gohir.A01G124000 Gossypium hirsutum HOM05D003281 ORTHO05D004128 9.8e-12 73.6 64 60.9
Hma1.2p1_0181F.1_g079910 Hydrangea macrophylla HOM05D003281 ORTHO05D004128 9.8e-12 73.6 64 60.9
Medtr5g095820 Medicago truncatula HOM05D003281 ORTHO05D004128 9.8e-12 73.6 57 64.9
PSO017G0093 Papaver somniferum HOM05D003281 ORTHO05D004128 9.8e-12 73.6 64 60.9
Rhsim05G0149200 Rhododendron simsii HOM05D003281 ORTHO05D004128 9.8e-12 73.6 64 60.9
CiPaw.10G062800 Carya illinoinensis HOM05D003281 ORTHO05D004128 1.3e-11 73.2 64 60.9
FvH4_1g24580 Fragaria vesca HOM05D003281 ORTHO05D004128 1.3e-11 73.2 64 59.4
FAN01G0101 Fragaria x ananassa HOM05D003281 ORTHO05D004128 1.3e-11 73.2 64 59.4
FAN19G0112 Fragaria x ananassa HOM05D003281 ORTHO05D004128 1.3e-11 73.2 64 59.4
FAN20G2649 Fragaria x ananassa HOM05D003281 ORTHO05D004128 1.3e-11 73.2 64 59.4
FAN23G2047 Fragaria x ananassa HOM05D003281 ORTHO05D004128 1.3e-11 73.2 64 59.4
FAN26G3221 Fragaria x ananassa HOM05D003281 ORTHO05D004128 1.3e-11 73.2 64 59.4
Gohir.A12G048600 Gossypium hirsutum HOM05D003281 ORTHO05D004128 1.3e-11 73.2 64 59.4
Gohir.D12G047400 Gossypium hirsutum HOM05D003281 ORTHO05D004128 1.3e-11 73.2 64 59.4
Gorai.008G050100 Gossypium raimondii HOM05D003281 ORTHO05D004128 1.3e-11 73.2 64 59.4
Medtr3g013710 Medicago truncatula HOM05D003281 ORTHO05D004128 1.3e-11 73.2 57 64.9
Rhsim01G0111700 Rhododendron simsii HOM05D003281 ORTHO05D004128 1.3e-11 73.2 73 54.8
Zm00001eb070920 Zea mays HOM05D003281 ORTHO05D004128 1.3e-11 73.2 64 59.4
Cfa000680 Carpinus fangiana HOM05D003281 ORTHO05D004128 1.7e-11 72.8 64 60.9
AUR62034379 Chenopodium quinoa HOM05D003281 ORTHO05D004128 1.7e-11 72.8 62 62.9
ClCG03G004230 Citrullus lanatus HOM05D003281 ORTHO05D004128 1.7e-11 72.8 64 60.9
MELO3C002406.2 Cucumis melo HOM05D003281 ORTHO05D004128 1.7e-11 72.8 64 60.9
Dinv18011 Davidia involucrata HOM05D003281 ORTHO05D004128 1.7e-11 72.8 64 59.4
PSO675G6428 Papaver somniferum HOM05D003281 ORTHO05D004128 1.7e-11 72.8 64 60.9
Sed0004438 Sechium edule HOM05D003281 ORTHO05D004128 1.7e-11 72.8 64 60.9
FvH4_7g04800 Fragaria vesca HOM05D003281 ORTHO05D004128 2.2e-11 72.4 64 59.4
Lsat_1_v5_gn_4_97540 Lactuca sativa HOM05D003281 ORTHO05D004128 2.2e-11 72.4 57 66.7
Manes.08G044300 Manihot esculenta HOM05D003281 ORTHO05D004128 2.2e-11 72.4 57 63.2
SalBow1G7114 Salvia bowleyana HOM05D003281 ORTHO05D004128 2.2e-11 72.4 57 64.9
Sc26g0004530 Simmondsia chinensis HOM05D003281 ORTHO05D004128 2.2e-11 72.4 64 57.8
Sopen08g023790 Solanum pennellii HOM05D003281 ORTHO05D004128 2.2e-11 72.4 64 59.4
Atru.chr10.431 Acer truncatum HOM05D003281 ORTHO05D004128 2.8e-11 72.0 57 64.9
Aqoxy5G04041 Aquilegia oxysepala HOM05D003281 ORTHO05D004128 2.8e-11 72.0 64 57.8
Cpa.g.sc30.140 Carica papaya HOM05D003281 ORTHO05D004128 2.8e-11 72.0 56 66.1
Eucgr.A00733 Eucalyptus grandis HOM05D003281 ORTHO05D004128 2.8e-11 72.0 65 58.5
TWI34G0807 Tripterygium wilfordii HOM05D003281 ORTHO05D004128 2.8e-11 72.0 64 59.4
CANSAT56G2301 Cannabis sativa HOM05D003281 ORTHO05D004128 3.7e-11 71.6 64 59.4
CANSAT56G3182 Cannabis sativa HOM05D003281 ORTHO05D004128 3.7e-11 71.6 64 59.4
Ca_18076_v3 Cicer arietinum L. HOM05D003281 ORTHO05D004128 3.7e-11 71.6 57 63.2
CsaV3_1G010170 Cucumis sativus L. HOM05D003281 ORTHO05D004128 3.7e-11 71.6 64 59.4
HanXRQChr13g0406911 Helianthus annuus HOM05D003281 ORTHO05D004128 3.7e-11 71.6 64 59.4
Lj2A344T44 Lonicera japonica HOM05D003281 ORTHO05D004128 3.7e-11 71.6 64 59.4
Prupe.5G007600 Prunus persica HOM05D003281 ORTHO05D004128 3.7e-11 71.6 64 59.4
ATR0150G008 Amborella trichopoda HOM05D003281 ORTHO05D004128 4.8e-11 71.2 64 59.4
Cfa000681 Carpinus fangiana HOM05D003281 ORTHO05D004128 4.8e-11 71.2 64 59.4
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 4.8e-11 71.2 57 64.9
unitig_46.g18376 Utricularia gibba HOM05D003281 ORTHO05D004128 4.8e-11 71.2 57 64.9
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 4.8e-11 71.2 57 64.9
MSTRG.16470 Avicennia marina HOM05D003281 ORTHO05D004128 6.3e-11 70.9 57 63.2
CSS0018694 Camellia sinensis var. sinensis HOM05D003281 ORTHO05D004128 6.3e-11 70.9 46 76.1
Dinv01965 Davidia involucrata HOM05D003281 ORTHO05D004128 6.3e-11 70.9 64 59.4
SGA_v2.0_scaffold254G45247 Striga asiatica HOM05D003281 ORTHO05D004128 6.3e-11 70.9 64 57.8
unitig_46.g18256 Utricularia gibba HOM05D003281 ORTHO05D004128 6.3e-11 70.9 76 52.6
arahy.Tifrunner.gnm1.ann1.D0LQY1 Arachis hypogaea HOM05D003281 ORTHO05D004128 1.1e-10 70.1 58 58.6
Glyma.11G158400 Glycine max HOM05D003281 ORTHO05D004128 1.1e-10 70.1 57 61.4
Lj3g0002589 Lotus japonicus HOM05D003281 ORTHO05D004128 1.1e-10 70.1 57 61.4
Rhsim04G0089900 Rhododendron simsii HOM05D003281 ORTHO05D004128 1.1e-10 70.1 56 64.3
SMO228G0099 Selaginella moellendorffii HOM05D003281 ORTHO05D004128 1.1e-10 70.1 64 54.7
Glyma.04G133100 Glycine max HOM05D003281 ORTHO05D004128 1.4e-10 69.7 57 61.4
SGA_v2.0_scaffold202G41492 Striga asiatica HOM05D003281 ORTHO05D004128 1.8e-10 69.3 63 57.1
SGA_v2.0_scaffold6G03254 Striga asiatica HOM05D003281 ORTHO05D004128 1.8e-10 69.3 63 57.1
Lalb_Chr07g0189731 Lupinus albus HOM05D003281 ORTHO05D004128 2.4e-10 68.9 57 61.4
VMungo1080G1879 Vigna mungo HOM05D003281 ORTHO05D004128 3.1e-10 68.6 57 61.4
arahy.Tifrunner.gnm1.ann1.F6IBWZ Arachis hypogaea HOM05D003281 ORTHO05D004128 5.4e-10 67.8 58 56.9
ECA232G1899 Erigeron canadensis HOM05D003281 ORTHO05D004128 5.4e-10 67.8 64 56.2
HPP92_009499 Vanilla planifolia HOM05D003281 ORTHO05D004128 5.4e-10 67.8 63 57.1
Zm00001eb413740 Zea mays HOM05D003281 ORTHO05D004128 5.4e-10 67.8 65 58.5
Phvul.005G018700 Phaseolus vulgaris HOM05D003281 ORTHO05D004128 7.0e-10 67.4 57 61.4
CDE06G0368 Ceratophyllum demersum HOM05D003281 ORTHO05D004128 1.6e-09 66.2 46 69.6
CBR_g50928 Chara braunii HOM05D003281 ORTHO05D004128 2.0e-09 65.9 63 55.6
Mapoly0032s0021 Marchantia polymorpha HOM05D003281 ORTHO05D004128 3.5e-09 65.1 57 57.9
CDE02G3604 Ceratophyllum demersum HOM05D003281 ORTHO05D004128 7.7e-09 63.9 63 54.0
AagrBONN_evm.TU.Sc2ySwM_368.3406 Anthoceros agrestis HOM05D003281 ORTHO05D004128 1.7e-08 62.8 65 50.8
HPP92_009464 Vanilla planifolia HOM05D003281 ORTHO05D004128 2.9e-08 62.0 56 58.9
Pp3c12_24590 Physcomitrium patens HOM05D003281 ORTHO05D004128 5.0e-08 61.2 64 50.0
Pp3c4_1350 Physcomitrium patens HOM05D003281 ORTHO05D004128 5.0e-08 61.2 64 50.0
FAN15G0156 Fragaria x ananassa HOM05D003281 ORTHO05D004128 1.9e-07 59.3 45 64.4
AUR62022320 Chenopodium quinoa HOM05D003281 ORTHO05D004128 3.2e-07 58.5 53 56.6
Cre12.g537581 Chlamydomonas reinhardtii HOM05D003281 ORTHO05D004128 4.2e-07 58.2 57 54.4
PRCOL_00001991 Prasinoderma coloniale HOM05D003281 ORTHO05D004128 1.6e-06 56.2 64 45.3
Eucgr.A00699 Eucalyptus grandis HOM05D003281 ORTHO05D004128 6.1e-06 54.3 48 54.2


User provided reference genes

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