Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 1.7e-179 632.5 311 100.0
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 3.6e-177 624.8 311 98.7
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 6.4e-158 560.8 298 91.3
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 8.6e-155 550.4 311 85.5
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.1e-152 542.0 307 85.3
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 9.9e-151 537.0 307 83.4
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 8.4e-150 533.9 307 83.7
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 3.2e-149 531.9 308 81.5
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 1.6e-148 529.6 308 81.5
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 4.6e-148 528.1 308 80.8
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.1e-146 523.5 311 79.4
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 9.9e-143 510.4 311 78.5
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 3.2e-141 505.4 311 77.8
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.3e-139 500.0 311 77.5
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.3e-139 499.2 308 77.3
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 3.3e-138 495.4 311 76.8
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 2.1e-137 492.7 309 76.4
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.1e-137 492.7 311 74.9
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 4.8e-137 491.5 311 74.3
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 8.1e-137 490.7 308 76.0
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 3.1e-136 488.8 311 75.6
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 6.9e-136 487.6 299 77.9
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 4.5e-135 485.0 310 76.8
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 3.8e-134 481.9 309 75.7
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 4.9e-134 481.5 309 75.7
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 4.9e-134 481.5 309 73.1
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 2.4e-133 479.2 313 74.1
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 6.0e-132 474.6 310 71.9
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 6.0e-132 474.6 311 72.0
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 3.9e-131 471.9 305 73.8
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 4.3e-130 468.4 305 73.4
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 2.8e-129 465.7 311 70.1
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 2.8e-129 465.7 311 70.1
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 4.8e-129 464.9 311 69.8
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 7.6e-127 457.6 304 70.4
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 3.2e-125 452.2 313 71.2
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 1.2e-124 450.3 311 68.5
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 2.7e-124 449.1 311 71.4
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 1.8e-123 446.4 309 72.5
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.5e-122 443.4 284 74.3
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 6.2e-121 438.0 304 70.1
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 2.0e-119 433.0 291 73.5
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 1.6e-116 423.3 284 73.2
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 1.7e-105 386.7 351 57.3
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 3.6e-100 369.0 205 84.4
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 3.6e-100 369.0 205 84.4
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 5.3e-96 355.1 220 80.0
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 5.0e-94 348.6 292 57.2
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 6.5e-94 348.2 298 54.4
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 1.5e-93 347.1 295 55.3
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 4.2e-93 345.5 301 54.8
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 7.2e-93 344.7 298 55.4
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.2e-92 344.0 306 53.6
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 4.7e-92 342.0 292 54.5
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 8.0e-92 341.3 302 53.6
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 1.0e-91 340.9 297 54.9
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 1.0e-91 340.9 300 54.0
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 1.4e-91 340.5 296 55.1
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 1.4e-91 340.5 299 54.2
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 2.3e-91 339.7 293 53.9
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 2.3e-91 339.7 292 54.1
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 6.7e-91 338.2 292 54.5
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 6.7e-91 338.2 306 53.6
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 1.5e-90 337.0 296 53.4
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 2.0e-90 336.7 306 52.3
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 2.6e-90 336.3 302 54.0
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 2.6e-90 336.3 297 53.9
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 2.6e-90 336.3 297 54.5
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 3.3e-90 335.9 292 54.1
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 4.4e-90 335.5 300 53.7
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 5.7e-90 335.1 292 54.5
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 7.4e-90 334.7 300 53.0
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 9.7e-90 334.3 311 53.4
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 9.7e-90 334.3 292 54.8
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 1.3e-89 334.0 300 54.3
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 1.3e-89 334.0 304 53.6
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 1.3e-89 334.0 297 53.5
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 1.7e-89 333.6 303 52.8
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 1.7e-89 333.6 292 54.8
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 1.7e-89 333.6 301 53.8
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 1.7e-89 333.6 303 53.5
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 1.7e-89 333.6 304 53.6
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 2.2e-89 333.2 291 54.3
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 2.2e-89 333.2 299 53.5
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 2.2e-89 333.2 302 52.0
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 2.8e-89 332.8 292 53.1
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 3.7e-89 332.4 278 55.8
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 8.2e-89 331.3 292 54.5
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 8.2e-89 331.3 299 52.8
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 8.2e-89 331.3 299 52.2
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 1.1e-88 330.9 250 64.0
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 1.4e-88 330.5 292 54.8
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.8e-88 330.1 291 53.6
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 1.8e-88 330.1 303 52.1
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 1.8e-88 330.1 297 53.9
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.4e-88 329.7 291 53.6
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 2.4e-88 329.7 298 52.7
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 3.1e-88 329.3 286 54.2
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 3.1e-88 329.3 301 52.8
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 3.1e-88 329.3 297 53.5
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 5.3e-88 328.6 297 53.9
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 7.0e-88 328.2 292 53.4
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 7.0e-88 328.2 297 52.2
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 7.0e-88 328.2 301 53.8
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 7.0e-88 328.2 297 52.9
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 9.1e-88 327.8 301 53.2
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 1.2e-87 327.4 293 54.3
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 1.2e-87 327.4 301 52.5
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 2.0e-87 326.6 310 51.9
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 2.6e-87 326.2 302 52.3
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 3.5e-87 325.9 306 52.3
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 3.5e-87 325.9 306 52.3
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 3.5e-87 325.9 292 53.8
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 5.9e-87 325.1 300 53.0
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 1.3e-86 323.9 298 51.3
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 2.2e-86 323.2 299 52.8
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 6.5e-86 321.6 292 51.0
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.5e-85 320.5 292 52.7
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 1.9e-85 320.1 302 51.3
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 4.2e-85 318.9 276 54.7
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 4.2e-85 318.9 312 50.0
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 5.5e-85 318.5 300 52.3
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 5.5e-85 318.5 292 52.4
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 3.6e-84 315.8 292 51.4
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 4.7e-84 315.5 306 51.6
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 8.0e-84 314.7 303 51.8
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 3.0e-83 312.8 299 51.5
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 4.0e-83 312.4 295 51.5
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 6.8e-83 311.6 292 51.0
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 8.8e-83 311.2 308 50.0
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 1.2e-82 310.8 300 50.3
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 2.0e-82 310.1 299 51.2
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 9.7e-82 307.8 290 48.6
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 4.8e-81 305.4 365 43.3
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 1.8e-80 303.5 291 47.4
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 4.1e-80 302.4 304 48.7
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 1.6e-79 300.4 272 52.6
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 8.0e-76 288.1 278 50.7
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 8.0e-76 288.1 278 50.7
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 2.3e-75 286.6 288 49.7
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 2.3e-75 286.6 297 49.2
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 1.5e-74 283.9 288 48.6
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 7.0e-72 275.0 276 47.5
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.6e-71 273.9 242 53.7
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 3.5e-71 272.7 288 48.3
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.1e-69 267.7 311 49.2
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 9.5e-69 264.6 297 46.1
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 2.8e-65 253.1 150 78.7
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 6.6e-62 241.9 218 52.3
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.2e-60 237.7 225 50.7
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 5.2e-59 232.3 162 71.6
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 2.0e-58 230.3 225 50.2
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 4.4e-58 229.2 218 49.5
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 6.4e-57 225.3 136 77.9
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 2.5e-53 213.4 136 74.3
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 2.5e-53 213.4 136 74.3
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 2.8e-44 183.3 111 78.4
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 4.7e-44 182.6 171 52.0
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 9.2e-40 168.3 331 33.2
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 2.7e-39 166.8 293 34.5
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 7.8e-39 165.2 265 36.2
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 2.8e-36 156.8 235 38.3
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 5.1e-30 136.0 192 40.6
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 4.0e-19 99.8 74 60.8
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 8.1e-12 75.5 72 45.8
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 8.4e-09 65.5 57 52.6


User provided reference genes

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