Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28784 Brassica carinata HOM05D007598 ORTHO05D009632 6.2e-39 163.7 85 100.0
A04p26490 Brassica napus HOM05D007598 ORTHO05D009632 9.9e-37 156.4 86 96.5
C04p63910 Brassica napus HOM05D007598 ORTHO05D009632 9.9e-37 156.4 86 96.5
BolC4t27858H Brassica oleracea HOM05D007598 ORTHO05D009632 9.9e-37 156.4 86 96.5
BraA04t18153Z Brassica rapa HOM05D007598 ORTHO05D009632 9.9e-37 156.4 86 96.5
Sp4g16850 Schrenkiella parvula HOM05D007598 ORTHO05D009632 1.7e-36 155.6 85 94.1
AT2G34585 Arabidopsis thaliana HOM05D007598 ORTHO05D009632 5.8e-29 130.6 85 81.2
AL4G30560 Arabidopsis lyrata HOM05D007598 ORTHO05D009632 2.9e-28 128.3 85 81.2
Thhalv10017600m.g Eutrema salsugineum HOM05D007598 ORTHO05D009632 2.9e-28 128.3 85 78.8
Carub.0004s1626 Capsella rubella HOM05D007598 ORTHO05D009632 1.1e-27 126.3 87 80.5
CARHR128680 Cardamine hirsuta HOM05D007598 ORTHO05D009632 2.1e-26 122.1 87 78.2
Aa31LG10G6810 Aethionema arabicum HOM05D007598 ORTHO05D009632 7.9e-26 120.2 87 74.7
THA.LOC104820651 Tarenaya hassleriana HOM05D007598 ORTHO05D009632 3.9e-25 117.9 92 71.7
Cpa.g.sc170.27 Carica papaya HOM05D007598 ORTHO05D009632 1.5e-21 105.9 89 69.7
Manes.17G070801 Manihot esculenta HOM05D007598 ORTHO05D009632 1.3e-20 102.8 88 65.9
PGSC0003DMG400021093 Solanum tuberosum HOM05D007598 ORTHO05D009632 1.3e-20 102.8 85 67.1
Lj6g0001552 Lotus japonicus HOM05D007598 ORTHO05D009632 1.1e-19 99.8 85 62.4
arahy.Tifrunner.gnm1.ann1.A3G0A3 Arachis hypogaea HOM05D007598 ORTHO05D009632 1.4e-19 99.4 85 62.4
CSS0006536 Camellia sinensis var. sinensis HOM05D007598 ORTHO05D009632 1.4e-19 99.4 85 63.5
CANSAT35G0825 Cannabis sativa HOM05D007598 ORTHO05D009632 1.4e-19 99.4 83 62.7
Thecc.06G149600 Theobroma cacao HOM05D007598 ORTHO05D009632 1.4e-19 99.4 87 66.7
arahy.Tifrunner.gnm1.ann1.KTXA2U Arachis hypogaea HOM05D007598 ORTHO05D009632 1.9e-19 99.0 85 62.4
PGR042G1521 Punica granatum HOM05D007598 ORTHO05D009632 1.9e-19 99.0 80 66.2
CSS0035986 Camellia sinensis var. sinensis HOM05D007598 ORTHO05D009632 2.5e-19 98.6 85 61.2
Sopen02g019560 Solanum pennellii HOM05D007598 ORTHO05D009632 2.5e-19 98.6 85 64.7
Ciclev10017916m.g Citrus clementina HOM05D007598 ORTHO05D009632 7.1e-19 97.1 78 65.4
MELO3C007128.2 Cucumis melo HOM05D007598 ORTHO05D009632 7.1e-19 97.1 86 62.8
QL05p057697 Quercus lobata HOM05D007598 ORTHO05D009632 9.3e-19 96.7 68 72.1
ClCG01G024670 Citrullus lanatus HOM05D007598 ORTHO05D009632 2.1e-18 95.5 86 62.8
Prupe.4G081500 Prunus persica HOM05D007598 ORTHO05D009632 2.1e-18 95.5 91 61.5
Rhsim02G0159000 Rhododendron simsii HOM05D007598 ORTHO05D009632 2.1e-18 95.5 87 58.6
Solyc02g070470.1 Solanum lycopersicum HOM05D007598 ORTHO05D009632 2.1e-18 95.5 85 63.5
Dinv32243 Davidia involucrata HOM05D007598 ORTHO05D009632 2.7e-18 95.1 78 66.7
Nitab4.5_0000420g0040 Nicotiana tabacum HOM05D007598 ORTHO05D009632 2.7e-18 95.1 84 65.5
TWI53G0871 Tripterygium wilfordii HOM05D007598 ORTHO05D009632 2.7e-18 95.1 86 66.3
CiPaw.10G091200 Carya illinoinensis HOM05D007598 ORTHO05D009632 3.5e-18 94.7 81 65.4
Psat1g188680 Pisum sativum HOM05D007598 ORTHO05D009632 4.6e-18 94.4 84 64.3
Nn3g20182 Nelumbo nucifera HOM05D007598 ORTHO05D009632 7.9e-18 93.6 83 66.3
AUR62030196 Chenopodium quinoa HOM05D007598 ORTHO05D009632 1.3e-17 92.8 81 64.2
Medtr2g019240 Medicago truncatula HOM05D007598 ORTHO05D009632 1.3e-17 92.8 61 75.4
Actinidia07703 Actinidia chinensis HOM05D007598 ORTHO05D009632 1.8e-17 92.4 75 65.3
CsaV3_6G051780 Cucumis sativus L. HOM05D007598 ORTHO05D009632 1.8e-17 92.4 91 61.5
Cc00_g10360 Coffea canephora HOM05D007598 ORTHO05D009632 2.3e-17 92.0 85 61.2
Duzib235G0096 Durio zibethinus HOM05D007598 ORTHO05D009632 2.3e-17 92.0 87 59.8
Gohir.D10G042400 Gossypium hirsutum HOM05D007598 ORTHO05D009632 2.3e-17 92.0 74 68.9
Lalb_Chr20g0117881 Lupinus albus HOM05D007598 ORTHO05D009632 2.3e-17 92.0 83 65.1
Potri.011G084300 Populus trichocarpa HOM05D007598 ORTHO05D009632 2.3e-17 92.0 51 80.4
Actinidia39580 Actinidia chinensis HOM05D007598 ORTHO05D009632 3.0e-17 91.7 75 66.7
Nitab4.5_0006887g0010 Nicotiana tabacum HOM05D007598 ORTHO05D009632 3.0e-17 91.7 50 84.0
Phvul.006G165400 Phaseolus vulgaris HOM05D007598 ORTHO05D009632 3.0e-17 91.7 85 60.0
AUR62002748 Chenopodium quinoa HOM05D007598 ORTHO05D009632 5.1e-17 90.9 81 63.0
Glyma.15G093500 Glycine max HOM05D007598 ORTHO05D009632 5.1e-17 90.9 85 60.0
SalBow8G5536 Salvia bowleyana HOM05D007598 ORTHO05D009632 5.1e-17 90.9 85 60.0
Sed0007826 Sechium edule HOM05D007598 ORTHO05D009632 5.1e-17 90.9 86 58.1
Atru.chr10.1775 Acer truncatum HOM05D007598 ORTHO05D009632 6.7e-17 90.5 83 61.4
Cfa000936 Carpinus fangiana HOM05D007598 ORTHO05D009632 6.7e-17 90.5 91 58.2
DCAR_027909 Daucus carota HOM05D007598 ORTHO05D009632 6.7e-17 90.5 61 73.8
CAN.G702.32 Capsicum annuum HOM05D007598 ORTHO05D009632 1.1e-16 89.7 68 67.6
Glyma.13G218700 Glycine max HOM05D007598 ORTHO05D009632 1.1e-16 89.7 85 61.2
PSO541G2526 Papaver somniferum HOM05D007598 ORTHO05D009632 1.1e-16 89.7 84 59.5
Sabra11G0066800 Salix brachista HOM05D007598 ORTHO05D009632 1.1e-16 89.7 89 55.1
MD05G1283100 Malus domestica HOM05D007598 ORTHO05D009632 1.5e-16 89.4 84 63.1
COL.COLO4_31062 Corchorus olitorius HOM05D007598 ORTHO05D009632 2.5e-16 88.6 46 91.3
Ca_00537_v3 Cicer arietinum L. HOM05D007598 ORTHO05D009632 3.3e-16 88.2 85 60.0
FvH4_3g05470 Fragaria vesca HOM05D007598 ORTHO05D009632 4.3e-16 87.8 84 57.1
Nitab4.5_0002744g0030 Nicotiana tabacum HOM05D007598 ORTHO05D009632 5.7e-16 87.4 85 60.0
FAN11G3574 Fragaria x ananassa HOM05D007598 ORTHO05D009632 7.4e-16 87.0 75 64.0
FAN25G0892 Fragaria x ananassa HOM05D007598 ORTHO05D009632 7.4e-16 87.0 57 73.7
EL10Ac8g19673 Beta vulgaris HOM05D007598 ORTHO05D009632 9.7e-16 86.7 50 80.0
FAN16G2639 Fragaria x ananassa HOM05D007598 ORTHO05D009632 9.7e-16 86.7 57 73.7
FAN21G2813 Fragaria x ananassa HOM05D007598 ORTHO05D009632 9.7e-16 86.7 57 73.7
Ah.14g086510 Amaranthus hybridus HOM05D007598 ORTHO05D009632 1.3e-15 86.3 63 68.3
HanXRQChr15g0480881 Helianthus annuus HOM05D007598 ORTHO05D009632 1.6e-15 85.9 85 57.6
unitig_749.g13736 Utricularia gibba HOM05D007598 ORTHO05D009632 1.6e-15 85.9 64 65.6
MBI02_g15148_MAGBIO Magnolia biondii HOM05D007598 ORTHO05D009632 2.2e-15 85.5 61 70.5
Aqoxy7G00246 Aquilegia oxysepala HOM05D007598 ORTHO05D009632 2.8e-15 85.1 71 63.4
Rhsim13G0114100 Rhododendron simsii HOM05D007598 ORTHO05D009632 2.8e-15 85.1 79 58.2
Migut.M00903 Erythranthe guttata HOM05D007598 ORTHO05D009632 4.8e-15 84.3 85 60.0
MD10G1261400 Malus domestica HOM05D007598 ORTHO05D009632 4.8e-15 84.3 90 53.3
HanXRQChr04g0114301 Helianthus annuus HOM05D007598 ORTHO05D009632 6.3e-15 84.0 84 56.0
RcHm_v2.0_Chr5g0014281 Rosa chinensis HOM05D007598 ORTHO05D009632 6.3e-15 84.0 87 55.2
Sc05g0006160 Simmondsia chinensis HOM05D007598 ORTHO05D009632 8.2e-15 83.6 48 75.0
TAR626G0451 Trochodendron aralioides HOM05D007598 ORTHO05D009632 1.1e-14 83.2 67 65.7
Migut.M01992 Erythranthe guttata HOM05D007598 ORTHO05D009632 1.4e-14 82.8 85 58.8
Os07g0154300 Oryza sativa ssp. japonica HOM05D007598 ORTHO05D009632 1.8e-14 82.4 85 54.1
HPP92_000988 Vanilla planifolia HOM05D007598 ORTHO05D009632 1.8e-14 82.4 81 56.8
ATR1098G093 Amborella trichopoda HOM05D007598 ORTHO05D009632 4.1e-14 81.3 51 74.5
Lsat_1_v5_gn_7_28481 Lactuca sativa HOM05D007598 ORTHO05D009632 4.1e-14 81.3 85 51.8
PGSC0003DMG400012092 Solanum tuberosum HOM05D007598 ORTHO05D009632 5.3e-14 80.9 50 74.0
ECA236G0778 Erigeron canadensis HOM05D007598 ORTHO05D009632 9.0e-14 80.1 46 78.3
Zm00001eb117510 Zea mays HOM05D007598 ORTHO05D009632 3.4e-13 78.2 75 52.0
SEGI_36626 Sequoiadendron giganteum HOM05D007598 ORTHO05D009632 1.3e-12 76.3 59 61.0
Mapoly0055s0099 Marchantia polymorpha HOM05D007598 ORTHO05D009632 1.2e-10 69.7 49 63.3
Pp3c14_11250 Physcomitrium patens HOM05D007598 ORTHO05D009632 1.1e-08 63.2 75 48.0
SEGI_00564 Sequoiadendron giganteum HOM05D007598 ORTHO05D009632 1.1e-06 56.6 54 46.3
Actinidia16706 Actinidia chinensis HOM05D000667 ORTHO05D004096 2.4e-06 55.5 58 50.0
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 3.1e-06 55.1 57 43.9


User provided reference genes

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