Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28779 Brassica carinata HOM05D007099 ORTHO05D009081 3.5e-80 301.6 155 100.0
A04p26440 Brassica napus HOM05D007099 ORTHO05D009081 3.9e-71 271.6 155 93.5
BraA04t18148Z Brassica rapa HOM05D007099 ORTHO05D009081 3.9e-71 271.6 155 93.5
C04p63850 Brassica napus HOM05D007099 ORTHO05D009081 1.5e-70 269.6 155 92.9
Sp4g16780 Schrenkiella parvula HOM05D007099 ORTHO05D009081 1.1e-68 263.5 170 82.9
BcaC02g11514 Brassica carinata HOM05D007099 ORTHO05D009081 1.8e-68 262.7 161 87.6
C04p14510 Brassica napus HOM05D007099 ORTHO05D009081 1.8e-68 262.7 161 87.6
BolC4t23034H Brassica oleracea HOM05D007099 ORTHO05D009081 1.8e-68 262.7 161 87.6
BolC4t27852H Brassica oleracea HOM05D007099 ORTHO05D009081 5.2e-68 261.2 155 91.0
A05p11160 Brassica napus HOM05D007099 ORTHO05D009081 3.4e-67 258.5 161 87.6
BraA05t20062Z Brassica rapa HOM05D007099 ORTHO05D009081 3.4e-67 258.5 161 87.6
Thhalv10017324m.g Eutrema salsugineum HOM05D007099 ORTHO05D009081 6.4e-66 254.2 170 80.0
BcaB02g09535 Brassica carinata HOM05D007099 ORTHO05D009081 2.4e-65 252.3 162 84.6
BcaB02g09534 Brassica carinata HOM05D007099 ORTHO05D009081 2.1e-61 239.2 150 86.0
AL4G30490 Arabidopsis lyrata HOM05D007099 ORTHO05D009081 3.6e-61 238.4 166 77.7
Carub.0004s1619 Capsella rubella HOM05D007099 ORTHO05D009081 6.2e-61 237.7 166 78.3
AT2G34520 Arabidopsis thaliana HOM05D007099 ORTHO05D009081 4.0e-60 235.0 166 76.5
CARHR128610 Cardamine hirsuta HOM05D007099 ORTHO05D009081 8.3e-58 227.3 166 75.3
Aa31LG1G28210 Aethionema arabicum HOM05D007099 ORTHO05D009081 9.6e-38 160.6 137 65.0
COL.COLO4_06718 Corchorus olitorius HOM05D007099 ORTHO05D009081 2.1e-37 159.5 111 72.1
Aqoxy12s037 Aquilegia oxysepala HOM05D007099 ORTHO05D009081 2.8e-37 159.1 98 79.6
Lj2P1221T100 Lonicera japonica HOM05D007099 ORTHO05D009081 2.8e-37 159.1 98 79.6
THA.LOC104825605 Tarenaya hassleriana HOM05D007099 ORTHO05D009081 1.1e-36 157.1 98 77.6
Glyma.05G091932 Glycine max HOM05D007099 ORTHO05D009081 9.9e-35 150.6 119 64.7
Lalb_Chr00c21g0405211 Lupinus albus HOM05D007099 ORTHO05D009081 1.3e-34 150.2 98 75.5
Lalb_Chr00c21g0405401 Lupinus albus HOM05D007099 ORTHO05D009081 1.3e-34 150.2 98 75.5
Lalb_Chr00c24g0407161 Lupinus albus HOM05D007099 ORTHO05D009081 1.3e-34 150.2 98 75.5
Zm00001eb261270 Zea mays HOM05D002252 ORTHO05D002451 1.3e-34 150.2 98 75.5
Nitab4.5_0000068g0330 Nicotiana tabacum HOM05D007099 ORTHO05D009081 4.9e-34 148.3 96 76.0
Nitab4.5_0012613g0010 Nicotiana tabacum HOM05D007099 ORTHO05D009081 4.9e-34 148.3 96 76.0
VMungo0647G1684 Vigna mungo HOM05D007099 ORTHO05D009081 4.9e-34 148.3 98 74.5
EL10Ac3g05283 Beta vulgaris HOM05D007099 ORTHO05D009081 6.4e-34 147.9 104 69.2
CAN.G371.64 Capsicum annuum HOM05D007099 ORTHO05D009081 3.2e-33 145.6 97 74.2
MD07G1070600 Malus domestica HOM05D007099 ORTHO05D009081 4.2e-33 145.2 96 71.9
MD03G1252400 Malus domestica HOM05D007099 ORTHO05D009081 5.4e-33 144.8 96 71.9
MD07G1069700 Malus domestica HOM05D007099 ORTHO05D009081 5.4e-33 144.8 95 71.6
Prupe.2G087000 Prunus persica HOM05D007099 ORTHO05D009081 5.4e-33 144.8 96 72.9
Prupe.2G087700 Prunus persica HOM05D007099 ORTHO05D009081 5.4e-33 144.8 96 72.9
Prupe.8G094900 Prunus persica HOM05D007099 ORTHO05D009081 5.4e-33 144.8 96 72.9
Cc11_g04750 Coffea canephora HOM05D007099 ORTHO05D009081 7.1e-33 144.4 98 70.4
Rhsim11G0096700 Rhododendron simsii HOM05D007099 ORTHO05D009081 1.6e-32 143.3 97 70.1
Sed0026927 Sechium edule HOM05D007099 ORTHO05D009081 2.1e-32 142.9 100 70.0
ClCG08G008070 Citrullus lanatus HOM05D007099 ORTHO05D009081 3.5e-32 142.1 98 70.4
Hund07474 Selenicereus undatus HOM05D007099 ORTHO05D009081 3.5e-32 142.1 98 70.4
AUR62006089 Chenopodium quinoa HOM05D007099 ORTHO05D009081 4.6e-32 141.7 104 66.3
AUR62019404 Chenopodium quinoa HOM05D007099 ORTHO05D009081 4.6e-32 141.7 104 66.3
Solyc04g079380.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 4.6e-32 141.7 97 71.1
Sopen04g032990 Solanum pennellii HOM05D007099 ORTHO05D009081 4.6e-32 141.7 97 71.1
PGSC0003DMG400007997 Solanum tuberosum HOM05D007099 ORTHO05D009081 4.6e-32 141.7 97 71.1
Hund03588 Selenicereus undatus HOM05D007099 ORTHO05D009081 6.0e-32 141.4 98 70.4
RcHm_v2.0_Chr1g0333591 Rosa chinensis HOM05D007099 ORTHO05D009081 7.9e-32 141.0 96 72.9
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 1.0e-31 140.6 103 65.0
SalBow8G2603 Salvia bowleyana HOM05D007099 ORTHO05D009081 1.8e-31 139.8 97 71.1
FAN06G3861 Fragaria x ananassa HOM05D007099 ORTHO05D009081 3.9e-31 138.7 95 70.5
FAN10G1031 Fragaria x ananassa HOM05D007099 ORTHO05D009081 3.9e-31 138.7 95 70.5
CANSAT56G2898 Cannabis sativa HOM05D007099 ORTHO05D009081 6.7e-31 137.9 96 71.9
MELO3C019879.2 Cucumis melo HOM05D007099 ORTHO05D009081 6.7e-31 137.9 100 67.0
DCAR_014524 Daucus carota HOM05D007099 ORTHO05D009081 8.7e-31 137.5 158 49.4
RcHm_v2.0_Chr5g0056441 Rosa chinensis HOM05D007099 ORTHO05D009081 1.1e-30 137.1 96 70.8
FvH4_7g06080 Fragaria vesca HOM05D007099 ORTHO05D009081 1.5e-30 136.7 96 69.8
CiPaw.13G036200 Carya illinoinensis HOM05D007099 ORTHO05D009081 1.9e-30 136.3 101 64.4
Ciclev10022860m.g Citrus clementina HOM05D007099 ORTHO05D009081 2.5e-30 136.0 98 68.4
TPR.G27292 Trifolium pratense HOM05D007099 ORTHO05D009081 2.5e-30 136.0 87 75.9
CsaV3_2G032930 Cucumis sativus L. HOM05D007099 ORTHO05D009081 3.3e-30 135.6 100 67.0
FAN16G1526 Fragaria x ananassa HOM05D007099 ORTHO05D009081 3.3e-30 135.6 95 68.4
Ah.07g205590 Amaranthus hybridus HOM05D007099 ORTHO05D009081 4.3e-30 135.2 106 64.2
QL04p041158 Quercus lobata HOM05D007099 ORTHO05D009081 9.6e-30 134.0 96 67.7
QL10p027581 Quercus lobata HOM05D007099 ORTHO05D009081 1.3e-29 133.7 96 66.7
Atru.chr1.3070 Acer truncatum HOM05D007099 ORTHO05D009081 1.6e-29 133.3 98 67.3
Atru.chr3.1047 Acer truncatum HOM05D007099 ORTHO05D009081 1.6e-29 133.3 98 67.3
arahy.Tifrunner.gnm1.ann1.5L8EUV Arachis hypogaea HOM05D007099 ORTHO05D009081 4.8e-29 131.7 87 73.6
Peaxi162Scf01092g00115 Petunia axillaris HOM05D007099 ORTHO05D009081 6.2e-29 131.3 88 75.0
HanXRQChr10g0308131 Helianthus annuus HOM05D007099 ORTHO05D009081 8.1e-29 131.0 98 65.3
Potri.001G424950 Populus trichocarpa HOM05D007099 ORTHO05D009081 1.1e-28 130.6 97 67.0
Lsat_1_v5_gn_9_15021 Lactuca sativa HOM05D007099 ORTHO05D009081 1.8e-28 129.8 98 66.3
Cfa011223 Carpinus fangiana HOM05D007099 ORTHO05D009081 3.1e-28 129.0 97 66.0
FAN12G2091 Fragaria x ananassa HOM05D007099 ORTHO05D009081 5.3e-28 128.3 91 67.0
Cfa011224 Carpinus fangiana HOM05D007099 ORTHO05D009081 6.9e-28 127.9 97 66.0
Manes.15G073400 Manihot esculenta HOM05D007099 ORTHO05D009081 6.9e-28 127.9 93 66.7
Haze_02608 Corylus avellana HOM05D007099 ORTHO05D009081 9.0e-28 127.5 97 66.0
Gorai.001G161900 Gossypium raimondii HOM05D007099 ORTHO05D009081 1.5e-27 126.7 80 76.2
PSO541G4216 Papaver somniferum HOM05D007099 ORTHO05D009081 1.5e-27 126.7 97 66.0
Sabra16G0287600 Salix brachista HOM05D007099 ORTHO05D009081 2.6e-27 125.9 97 63.9
PSO675G8234 Papaver somniferum HOM05D007099 ORTHO05D009081 3.4e-27 125.6 97 64.9
SHI18971 Sapria himalayana HOM05D007099 ORTHO05D009081 3.4e-27 125.6 93 66.7
PSO541G5582 Papaver somniferum HOM05D007099 ORTHO05D009081 1.3e-26 123.6 97 63.9
arahy.Tifrunner.gnm1.ann1.N1QJ6Q Arachis hypogaea HOM05D007099 ORTHO05D009081 1.7e-26 123.2 86 68.6
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 2.9e-26 122.5 92 64.1
ECA234G1703 Erigeron canadensis HOM05D007099 ORTHO05D009081 3.2e-25 119.0 98 59.2
PSO675G5170 Papaver somniferum HOM05D007099 ORTHO05D009081 5.5e-25 118.2 97 63.9
FvH4_3g30490 Fragaria vesca HOM05D007099 ORTHO05D009081 3.9e-23 112.1 79 69.6
FAN11G0918 Fragaria x ananassa HOM05D007099 ORTHO05D009081 3.9e-23 112.1 79 69.6
Solyc00g500363.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 2.8e-21 105.9 71 70.4
arahy.Tifrunner.gnm1.ann1.BT1F12 Arachis hypogaea HOM05D007099 ORTHO05D009081 4.0e-20 102.1 110 51.8
Gohir.A01G126800 Gossypium hirsutum HOM05D007099 ORTHO05D009081 6.9e-20 101.3 62 75.8
Nn1g10177 Nelumbo nucifera HOM05D007099 ORTHO05D009081 2.0e-19 99.8 63 76.2
SMO134G0293 Selaginella moellendorffii HOM05D007099 ORTHO05D009081 1.3e-18 97.1 93 54.8
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 2.2e-18 96.3 70 67.1
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 2.9e-18 95.9 71 67.6
Lalb_Chr11g0070131 Lupinus albus HOM05D007099 ORTHO05D009081 2.9e-18 95.9 63 74.6
Lalb_Chr11g0070211 Lupinus albus HOM05D007099 ORTHO05D009081 2.9e-18 95.9 63 74.6
ClCG01G010070 Citrullus lanatus HOM05D007099 ORTHO05D009081 3.8e-18 95.5 82 58.5
arahy.Tifrunner.gnm1.ann1.HLYH4Q Arachis hypogaea HOM05D007099 ORTHO05D009081 1.4e-17 93.6 70 62.9
Solyc09g050030.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 1.6e-16 90.1 63 68.3
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 2.3e-15 86.3 60 68.3
Mapoly0991s0001 Marchantia polymorpha HOM05D007099 ORTHO05D009081 5.1e-15 85.1 57 71.9
Rhsim10G0009600 Rhododendron simsii HOM05D000071 ORTHO05D000029 1.5e-14 83.6 116 44.8
Cre17.g726300 Chlamydomonas reinhardtii HOM05D007099 ORTHO05D009081 1.1e-12 77.4 101 43.6
Nitab4.5_0004300g0130 Nicotiana tabacum HOM05D002864 ORTHO05D007972 2.4e-12 76.3 52 69.2
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 1.5e-11 73.6 56 67.9
Pp3c2_23460 Physcomitrium patens HOM05D007099 ORTHO05D009081 5.0e-10 68.6 53 60.4
Nitab4.5_0000033g0070 Nicotiana tabacum HOM05D007099 ORTHO05D009081 4.2e-09 65.5 48 66.7
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 4.2e-09 65.5 71 52.1
Lalb_Chr00c21g0405241 Lupinus albus HOM05D007099 ORTHO05D009081 3.6e-08 62.4 37 78.4
GSVIVG01018700001 Vitis vinifera HOM05D007099 ORTHO05D009081 3.6e-08 62.4 42 66.7
A01p01790 Brassica napus HOM05D005640 ORTHO05D102632 6.1e-08 61.6 36 86.1
Peaxi162Scf44104g00001 Petunia axillaris HOM05D007099 ORTHO05D009081 1.0e-07 60.8 39 69.2


User provided reference genes

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