Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 1.2e-138 496.5 253 100.0
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 6.7e-105 384.4 222 91.0
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 1.9e-96 356.3 222 84.7
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 2.5e-96 355.9 222 83.3
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 1.4e-94 350.1 222 82.9
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 4.5e-93 345.1 222 82.9
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 7.6e-93 344.4 224 80.8
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 1.3e-92 343.6 222 80.6
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 1.1e-91 340.5 222 81.5
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 1.1e-91 340.5 222 81.5
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 4.6e-90 335.1 226 77.9
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 6.1e-90 334.7 222 78.8
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 6.1e-90 334.7 222 78.8
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 1.0e-89 334.0 226 77.4
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 2.5e-88 329.3 222 78.4
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 4.3e-88 328.6 229 76.0
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 2.0e-85 319.7 221 77.4
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 4.5e-85 318.5 222 74.3
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 9.4e-83 310.8 220 74.5
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 3.4e-77 292.4 227 68.7
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 2.0e-72 276.6 222 66.2
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 8.5e-68 261.2 224 61.2
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 8.5e-68 261.2 201 64.7
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 1.8e-65 253.4 184 65.2
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 3.0e-65 252.7 204 62.7
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 8.8e-65 251.1 196 63.8
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 2.6e-64 249.6 220 60.0
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 4.4e-64 248.8 204 61.8
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 4.4e-64 248.8 222 58.6
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 4.8e-63 245.4 204 61.3
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 1.1e-62 244.2 173 68.8
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 1.4e-62 243.8 224 56.7
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 4.1e-62 242.3 191 62.3
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 4.1e-62 242.3 213 58.2
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 5.3e-62 241.9 219 59.4
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 5.3e-62 241.9 176 66.5
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 5.3e-62 241.9 176 66.5
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 1.2e-61 240.7 178 64.6
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 1.2e-61 240.7 173 68.2
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 1.6e-61 240.4 175 67.4
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 1.6e-61 240.4 191 61.3
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 2.0e-61 240.0 188 63.3
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 2.0e-61 240.0 226 57.5
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 2.0e-61 240.0 173 66.5
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 2.7e-61 239.6 173 65.9
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 3.5e-61 239.2 220 58.6
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 5.9e-61 238.4 219 56.6
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 7.7e-61 238.0 185 62.2
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 7.7e-61 238.0 219 56.6
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 7.7e-61 238.0 173 66.5
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 1.0e-60 237.7 221 55.7
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 1.3e-60 237.3 219 57.1
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 1.3e-60 237.3 220 55.5
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 1.3e-60 237.3 220 59.5
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 1.3e-60 237.3 219 57.1
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 1.3e-60 237.3 219 57.1
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 1.3e-60 237.3 219 56.6
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 2.2e-60 236.5 222 55.9
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.2e-60 236.5 222 55.9
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 2.2e-60 236.5 218 58.3
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 2.9e-60 236.1 222 55.9
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 2.9e-60 236.1 223 53.4
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 3.8e-60 235.7 174 64.9
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 3.8e-60 235.7 223 52.9
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 5.0e-60 235.3 219 56.2
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 6.5e-60 235.0 173 65.3
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 6.5e-60 235.0 219 56.6
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 6.5e-60 235.0 219 56.6
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 6.5e-60 235.0 219 56.6
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 1.5e-59 233.8 220 57.7
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 2.5e-59 233.0 221 55.7
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 3.2e-59 232.6 179 61.5
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 4.2e-59 232.3 185 61.1
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 5.5e-59 231.9 186 61.3
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 7.2e-59 231.5 173 65.3
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 7.2e-59 231.5 232 53.9
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 7.2e-59 231.5 175 64.6
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 9.4e-59 231.1 219 56.2
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 1.6e-58 230.3 223 53.4
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 2.1e-58 229.9 186 61.3
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 2.1e-58 229.9 221 54.3
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 6.1e-58 228.4 220 53.6
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 6.1e-58 228.4 233 53.6
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 6.1e-58 228.4 220 54.1
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 8.0e-58 228.0 227 54.6
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 8.0e-58 228.0 206 57.8
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 1.4e-57 227.3 220 54.5
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 3.0e-57 226.1 209 56.5
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 5.2e-57 225.3 179 60.9
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 5.2e-57 225.3 215 53.0
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 5.2e-57 225.3 217 52.1
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 6.8e-57 224.9 184 58.7
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 8.8e-57 224.6 218 54.1
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 2.0e-56 223.4 221 54.3
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 3.4e-56 222.6 185 61.1
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 4.4e-56 222.2 175 60.6
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 1.7e-55 220.3 190 57.9
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 4.8e-55 218.8 175 59.4
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 1.4e-54 217.2 205 56.6
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 2.4e-54 216.5 222 54.5
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 1.6e-53 213.8 191 58.6
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 2.7e-53 213.0 219 53.0
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.8e-52 209.1 266 44.4
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 9.5e-51 204.5 226 47.3
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 2.1e-50 203.4 175 59.4
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 1.0e-49 201.1 143 67.8
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 5.2e-49 198.7 115 80.0
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 4.4e-48 195.7 283 40.3
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 2.8e-47 193.0 211 49.3
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 8.3e-47 191.4 144 71.5
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 2.4e-46 189.9 130 75.4
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 2.9e-44 183.0 108 76.9
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 2.7e-37 159.8 115 62.6
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 3.5e-37 159.5 166 47.0
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 6.0e-37 158.7 289 37.7
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 1.0e-36 157.9 177 48.6
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 8.6e-36 154.8 90 78.9
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 5.6e-35 152.1 181 43.1
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.2e-34 151.0 258 38.8
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 4.0e-33 146.0 152 50.7
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 9.2e-30 134.8 77 77.9
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 7.8e-29 131.7 169 37.9
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 3.9e-28 129.4 177 39.5
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 1.1e-27 127.9 86 79.1
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 1.5e-27 127.5 83 80.7
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 1.5e-27 127.5 83 80.7
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 2.5e-27 126.7 63 98.4
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 7.3e-27 125.2 66 93.9
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 7.3e-27 125.2 66 93.9
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 9.5e-27 124.8 70 81.4
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 1.6e-26 124.0 70 82.9
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 2.8e-26 123.2 146 51.4
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 1.3e-23 114.4 68 75.0
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 2.9e-23 113.2 147 44.9
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 1.1e-22 111.3 70 68.6
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 1.3e-20 104.4 57 86.0
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 1.1e-19 101.3 84 59.5
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 6.2e-18 95.5 136 44.1
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 1.5e-16 90.9 74 54.1
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 9.2e-14 81.6 119 35.3
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 3.5e-13 79.7 38 100.0
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 3.5e-13 79.7 38 100.0
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 3.5e-13 79.7 48 77.1
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 3.0e-12 76.6 133 39.1
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 1.2e-10 71.2 80 50.0
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 1.2e-08 64.7 50 68.0
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 5.8e-08 62.4 29 100.0
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 5.8e-08 62.4 29 100.0
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 5.8e-08 62.4 29 100.0
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 5.8e-08 62.4 38 71.1
MCO09G652 Micromonas commoda HOM05D004920 ORTHO05D005998 9.9e-08 61.6 87 28.7
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 2.2e-07 60.5 71 45.1
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 2.9e-07 60.1 29 96.6
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 3.2e-06 56.6 51 51.0
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 4.2e-06 56.2 132 27.3


User provided reference genes

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