Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28689 Brassica carinata HOM05D006230 ORTHO05D007598 1.5e-72 276.2 144 100.0
A04p25750 Brassica napus HOM05D006230 ORTHO05D007598 3.4e-69 265.0 144 95.8
BraA04t18078Z Brassica rapa HOM05D006230 ORTHO05D007598 2.4e-67 258.8 144 95.1
BolC4t27775H Brassica oleracea HOM05D006230 ORTHO05D007598 7.0e-67 257.3 144 94.4
C04p62980 Brassica napus HOM05D006230 ORTHO05D007598 5.9e-66 254.2 144 93.8
Thhalv10017390m.g Eutrema salsugineum HOM05D006230 ORTHO05D007598 7.2e-64 247.3 144 90.3
BcaC02g07821 Brassica carinata HOM05D006230 ORTHO05D007598 1.5e-61 239.6 144 88.9
Sp4g15790 Schrenkiella parvula HOM05D006230 ORTHO05D007598 9.8e-61 236.9 148 87.2
BcaB02g10562 Brassica carinata HOM05D006230 ORTHO05D007598 3.1e-59 231.9 141 86.5
Carub.0004s1508 Capsella rubella HOM05D006230 ORTHO05D007598 9.2e-59 230.3 148 85.8
AL4G29120 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 2.0e-58 229.2 148 85.8
BcaC02g11431 Brassica carinata HOM05D006230 ORTHO05D007598 2.0e-58 229.2 144 84.0
C04p15650 Brassica napus HOM05D006230 ORTHO05D007598 2.0e-58 229.2 144 84.0
CARHR127460 Cardamine hirsuta HOM05D006230 ORTHO05D007598 4.5e-58 228.0 148 85.1
AT2G33450 Arabidopsis thaliana HOM05D006230 ORTHO05D007598 1.3e-57 226.5 148 85.1
Sp1g03290 Schrenkiella parvula HOM05D006230 ORTHO05D007598 2.3e-57 225.7 148 84.5
Aa31LG5G3840 Aethionema arabicum HOM05D006230 ORTHO05D007598 3.3e-56 221.9 148 83.1
BolC4t23134H Brassica oleracea HOM05D006230 ORTHO05D007598 9.5e-56 220.3 145 82.1
Carub.0001s0365 Capsella rubella HOM05D006230 ORTHO05D007598 1.6e-55 219.5 141 83.7
AL1G14110 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 1.2e-53 213.4 144 82.6
THA.LOC104801077 Tarenaya hassleriana HOM05D006230 ORTHO05D007598 7.0e-51 204.1 149 76.5
CiPaw.02G108600 Carya illinoinensis HOM05D006230 ORTHO05D007598 6.8e-46 187.6 119 80.7
Ca_05177_v3 Cicer arietinum L. HOM05D006230 ORTHO05D007598 2.6e-45 185.7 139 71.9
Potri.010G068500 Populus trichocarpa HOM05D006230 ORTHO05D007598 4.4e-45 184.9 127 75.6
Cfa014753 Carpinus fangiana HOM05D006230 ORTHO05D007598 7.5e-45 184.1 154 68.8
Sabra10G0038500 Salix brachista HOM05D006230 ORTHO05D007598 9.8e-45 183.7 127 75.6
Ciclev10006136m.g Citrus clementina HOM05D006230 ORTHO05D007598 1.7e-44 183.0 156 66.0
Prupe.1G045100 Prunus persica HOM05D006230 ORTHO05D007598 2.9e-44 182.2 154 66.2
Psat6g103800 Pisum sativum HOM05D006230 ORTHO05D007598 4.9e-44 181.4 129 76.0
QL06p019992 Quercus lobata HOM05D006230 ORTHO05D007598 4.9e-44 181.4 140 70.7
Haze_11428 Corylus avellana HOM05D006230 ORTHO05D007598 6.4e-44 181.0 154 67.5
FvH4_4g04200 Fragaria vesca HOM05D006230 ORTHO05D007598 8.3e-44 180.6 145 66.2
Phvul.007G278700 Phaseolus vulgaris HOM05D006230 ORTHO05D007598 1.1e-43 180.3 121 77.7
Glyma.10G002600 Glycine max HOM05D006230 ORTHO05D007598 1.4e-43 179.9 129 75.2
Manes.15G043800 Manihot esculenta HOM05D006230 ORTHO05D007598 1.4e-43 179.9 128 75.0
Atru.chr4.1981 Acer truncatum HOM05D006230 ORTHO05D007598 3.2e-43 178.7 148 70.9
Potri.008G169800 Populus trichocarpa HOM05D006230 ORTHO05D007598 3.2e-43 178.7 135 68.9
MD16G1223800 Malus domestica HOM05D006230 ORTHO05D007598 4.1e-43 178.3 117 79.5
Eucgr.H02995 Eucalyptus grandis HOM05D006230 ORTHO05D007598 5.4e-43 177.9 140 68.6
Lalb_Chr01g0020881 Lupinus albus HOM05D006230 ORTHO05D007598 5.4e-43 177.9 133 71.4
Thecc.04G260000 Theobroma cacao HOM05D006230 ORTHO05D007598 5.4e-43 177.9 147 69.4
Medtr1g041320 Medicago truncatula HOM05D006230 ORTHO05D007598 9.2e-43 177.2 132 71.2
FAN12G2171 Fragaria x ananassa HOM05D006230 ORTHO05D007598 1.6e-42 176.4 145 64.8
TWI73G0434 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 1.6e-42 176.4 119 78.2
CANSAT78G0887 Cannabis sativa HOM05D006230 ORTHO05D007598 2.1e-42 176.0 117 81.2
COL.COLO4_15930 Corchorus olitorius HOM05D006230 ORTHO05D007598 2.7e-42 175.6 147 70.1
Gohir.A02G041200 Gossypium hirsutum HOM05D006230 ORTHO05D007598 2.7e-42 175.6 148 70.3
CANSAT78G0232 Cannabis sativa HOM05D006230 ORTHO05D007598 3.5e-42 175.3 144 70.1
Lalb_Chr03g0037521 Lupinus albus HOM05D006230 ORTHO05D007598 3.5e-42 175.3 129 73.6
RcHm_v2.0_Chr4g0394691 Rosa chinensis HOM05D006230 ORTHO05D007598 3.5e-42 175.3 150 64.7
Gorai.011G177300 Gossypium raimondii HOM05D006230 ORTHO05D007598 4.6e-42 174.9 147 68.7
CsaV3_3G011880 Cucumis sativus L. HOM05D006230 ORTHO05D007598 6.0e-42 174.5 133 75.9
FAN17G1889 Fragaria x ananassa HOM05D006230 ORTHO05D007598 6.0e-42 174.5 136 68.4
MELO3C006400.2 Cucumis melo HOM05D006230 ORTHO05D007598 7.8e-42 174.1 141 70.9
Dinv27088 Davidia involucrata HOM05D006230 ORTHO05D007598 7.8e-42 174.1 131 73.3
Gohir.A10G109400 Gossypium hirsutum HOM05D006230 ORTHO05D007598 7.8e-42 174.1 147 69.4
Gohir.D10G157800 Gossypium hirsutum HOM05D006230 ORTHO05D007598 7.8e-42 174.1 147 68.7
Aqoxy2G03714 Aquilegia oxysepala HOM05D006230 ORTHO05D007598 1.3e-41 173.3 126 72.2
Duzib151G0304 Durio zibethinus HOM05D006230 ORTHO05D007598 1.3e-41 173.3 147 68.0
Gohir.D02G047000 Gossypium hirsutum HOM05D006230 ORTHO05D007598 1.3e-41 173.3 148 69.6
ECA234G3973 Erigeron canadensis HOM05D006230 ORTHO05D007598 1.7e-41 172.9 144 67.4
Gorai.005G052000 Gossypium raimondii HOM05D006230 ORTHO05D007598 1.7e-41 172.9 148 69.6
PGR004G2031 Punica granatum HOM05D006230 ORTHO05D007598 1.7e-41 172.9 131 71.8
TWI53G0221 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 1.7e-41 172.9 119 77.3
ClCG05G004160 Citrullus lanatus HOM05D006230 ORTHO05D007598 3.9e-41 171.8 142 67.6
Sc13g0005900 Simmondsia chinensis HOM05D006230 ORTHO05D007598 3.9e-41 171.8 126 70.6
TPR.G32792 Trifolium pratense HOM05D006230 ORTHO05D007598 3.9e-41 171.8 117 76.1
Lj6g0026311 Lotus japonicus HOM05D006230 ORTHO05D007598 5.0e-41 171.4 143 67.8
Sed0003219 Sechium edule HOM05D006230 ORTHO05D007598 5.0e-41 171.4 142 71.1
TAR636G3560 Trochodendron aralioides HOM05D006230 ORTHO05D007598 6.6e-41 171.0 118 77.1
AUR62015538 Chenopodium quinoa HOM05D006230 ORTHO05D007598 8.6e-41 170.6 133 66.9
DCAR_002306 Daucus carota HOM05D006230 ORTHO05D007598 8.6e-41 170.6 153 63.4
Duzib212G0996 Durio zibethinus HOM05D006230 ORTHO05D007598 8.6e-41 170.6 147 66.0
PSO017G6779 Papaver somniferum HOM05D006230 ORTHO05D007598 8.6e-41 170.6 130 71.5
Zm00001eb222850 Zea mays HOM05D006230 ORTHO05D007598 1.1e-40 170.2 144 64.6
EL10Ac3g04971 Beta vulgaris HOM05D006230 ORTHO05D007598 1.5e-40 169.9 137 70.8
Cpa.g.sc44.25 Carica papaya HOM05D006230 ORTHO05D007598 1.5e-40 169.9 120 75.8
MD13G1218400 Malus domestica HOM05D006230 ORTHO05D007598 1.5e-40 169.9 113 78.8
PSO063G4949 Papaver somniferum HOM05D006230 ORTHO05D007598 2.5e-40 169.1 145 66.9
Actinidia35808 Actinidia chinensis HOM05D006230 ORTHO05D007598 5.6e-40 167.9 119 72.3
Actinidia20827 Actinidia chinensis HOM05D006230 ORTHO05D007598 7.3e-40 167.5 119 72.3
Nitab4.5_0006936g0040 Nicotiana tabacum HOM05D006230 ORTHO05D007598 7.3e-40 167.5 136 69.1
CSS0007771 Camellia sinensis var. sinensis HOM05D006230 ORTHO05D007598 9.5e-40 167.2 119 74.8
PGSC0003DMG400017161 Solanum tuberosum HOM05D006230 ORTHO05D007598 9.5e-40 167.2 120 75.8
ATR0736G074 Amborella trichopoda HOM05D006230 ORTHO05D007598 1.2e-39 166.8 123 71.5
Hma1.2p1_0112F.1_g054490 Hydrangea macrophylla HOM05D006230 ORTHO05D007598 1.2e-39 166.8 131 67.9
Nitab4.5_0001425g0090 Nicotiana tabacum HOM05D006230 ORTHO05D007598 1.6e-39 166.4 136 69.1
Oeu023312.1 Olea europaea HOM05D006230 ORTHO05D007598 1.6e-39 166.4 130 70.8
Lsat_1_v5_gn_2_39681 Lactuca sativa HOM05D006230 ORTHO05D007598 3.6e-39 165.2 138 69.6
Solyc09g090410.3 Solanum lycopersicum HOM05D006230 ORTHO05D007598 4.7e-39 164.9 120 74.2
Sopen09g033320 Solanum pennellii HOM05D006230 ORTHO05D007598 6.2e-39 164.5 121 74.4
Peaxi162Scf00602g00421 Petunia axillaris HOM05D006230 ORTHO05D007598 1.4e-38 163.3 129 70.5
Sed0015876 Sechium edule HOM05D006230 ORTHO05D007598 1.4e-38 163.3 145 64.8
GSVIVG01027870001 Vitis vinifera HOM05D006230 ORTHO05D007598 1.4e-38 163.3 125 72.0
Zm00001eb047510 Zea mays HOM05D006230 ORTHO05D007598 5.2e-38 161.4 144 62.5
CAN.G220.45 Capsicum annuum HOM05D006230 ORTHO05D007598 6.8e-38 161.0 149 63.8
HanXRQChr14g0434851 Helianthus annuus HOM05D006230 ORTHO05D007598 6.8e-38 161.0 138 65.9
Os05g0101400 Oryza sativa ssp. japonica HOM05D006230 ORTHO05D007598 6.8e-38 161.0 132 68.9
CDE05G0971 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 4.4e-37 158.3 130 66.9
Cc03_g05900 Coffea canephora HOM05D006230 ORTHO05D007598 7.5e-37 157.5 147 59.9
CDE11G0022 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 1.3e-36 156.8 128 69.5
vmacro08530 Vaccinium macrocarpon HOM05D006230 ORTHO05D007598 1.4e-35 153.3 123 71.5
HPP92_012809 Vanilla planifolia HOM05D006230 ORTHO05D007598 1.4e-35 153.3 118 68.6
Hund11917 Selenicereus undatus HOM05D006230 ORTHO05D007598 4.1e-35 151.8 130 64.6
arahy.Tifrunner.gnm1.ann1.ADZ0J4 Arachis hypogaea HOM05D006230 ORTHO05D007598 7.1e-35 151.0 78 93.6
SalBow3G4585 Salvia bowleyana HOM05D006230 ORTHO05D007598 9.2e-35 150.6 141 59.6
Oeu059405.1 Olea europaea HOM05D006230 ORTHO05D007598 1.6e-34 149.8 163 55.2
Migut.G00496 Erythranthe guttata HOM05D006230 ORTHO05D007598 2.1e-34 149.4 120 67.5
RcHm_v2.0_Chr4g0394651 Rosa chinensis HOM05D006230 ORTHO05D007598 3.5e-34 148.7 135 60.7
Thecc.10G124200 Theobroma cacao HOM05D006230 ORTHO05D007598 1.0e-33 147.1 78 92.3
unitig_32.g10851 Utricularia gibba HOM05D006230 ORTHO05D007598 2.3e-33 146.0 120 67.5
SGA_v2.0_scaffold67G22731 Striga asiatica HOM05D006230 ORTHO05D007598 3.9e-33 145.2 129 62.0
Prupe.8G083300 Prunus persica HOM05D006230 ORTHO05D007598 4.3e-32 141.7 82 84.1
SEGI_13554 Sequoiadendron giganteum HOM05D006230 ORTHO05D007598 4.7e-31 138.3 130 60.8
MD00G1118000 Malus domestica HOM05D006230 ORTHO05D007598 1.4e-30 136.7 75 86.7
Rhsim04G0174900 Rhododendron simsii HOM05D006230 ORTHO05D007598 1.8e-30 136.3 113 68.1
AagrBONN_evm.TU.Sc2ySwM_228.3795 Anthoceros agrestis HOM05D006230 ORTHO05D007598 3.0e-25 119.0 126 54.8
Pp3c6_1140 Physcomitrium patens HOM05D006230 ORTHO05D007598 1.9e-24 116.3 127 58.3
Mapoly0087s0077 Marchantia polymorpha HOM05D006230 ORTHO05D007598 3.3e-24 115.5 125 53.6
Pp3c5_28500 Physcomitrium patens HOM05D006230 ORTHO05D007598 5.6e-24 114.8 125 56.0
Ah.04g155450 Amaranthus hybridus HOM05D000071 ORTHO05D007598 1.8e-22 109.8 96 61.5
Duzib052G0467 Durio zibethinus HOM05D006230 ORTHO05D007598 2.0e-21 106.3 119 55.5
SMO131G0001 Selaginella moellendorffii HOM05D006230 ORTHO05D007598 3.4e-21 105.5 75 65.3
CBR_g23072 Chara braunii HOM05D006230 ORTHO05D007598 7.6e-21 104.4 84 61.9
Cre06.g265800 Chlamydomonas reinhardtii HOM05D006230 ORTHO05D007598 8.7e-17 90.9 77 57.1
MCO07G061 Micromonas commoda HOM05D006230 ORTHO05D007598 2.1e-15 86.3 73 58.9
Nn3g19733 Nelumbo nucifera HOM05D006230 ORTHO05D007598 7.4e-08 61.2 36 86.1
VMungo0684G0001 Vigna mungo HOM05D006230 ORTHO05D007598 5.3e-06 55.1 72 40.3


User provided reference genes

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