Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28641 Brassica carinata HOM05D000172 ORTHO05D004529 5.8e-35 150.2 69 100.0
BcaB02g10505 Brassica carinata HOM05D000172 ORTHO05D004529 1.7e-18 95.5 56 75.0
BcaC02g07878 Brassica carinata HOM05D000172 ORTHO05D004529 2.2e-18 95.1 48 87.5
Sp4g15280 Schrenkiella parvula HOM05D000172 ORTHO05D004529 2.4e-12 75.1 36 88.9
A05p12720 Brassica napus HOM05D000172 ORTHO05D004529 5.3e-12 73.9 36 86.1
C04p16640 Brassica napus HOM05D000172 ORTHO05D004529 5.3e-12 73.9 36 86.1
BolC4t23214H Brassica oleracea HOM05D000172 ORTHO05D004529 5.3e-12 73.9 36 86.1
BraA05t20211Z Brassica rapa HOM05D000172 ORTHO05D004529 5.3e-12 73.9 36 86.1
Thhalv10016663m.g Eutrema salsugineum HOM05D000172 ORTHO05D004529 9.0e-12 73.2 36 86.1
BolC4t27717H Brassica oleracea HOM05D000568 ORTHO05D000628 1.5e-11 72.4 36 86.1
Carub.0004s1435 Capsella rubella HOM05D000172 ORTHO05D004529 2.6e-11 71.6 36 83.3
AL4G28440 Arabidopsis lyrata HOM05D000172 ORTHO05D004529 3.4e-11 71.2 36 80.6
BcaB01g03946 Brassica carinata HOM05D000172 ORTHO05D004529 4.5e-11 70.9 36 80.6
BcaC01g05872 Brassica carinata HOM05D000172 ORTHO05D004529 4.5e-11 70.9 36 80.6
C03p21560 Brassica napus HOM05D000172 ORTHO05D004529 9.9e-11 69.7 36 83.3
AT2G32920 Arabidopsis thaliana HOM05D000172 ORTHO05D004529 1.3e-10 69.3 36 77.8
CARHR126850 Cardamine hirsuta HOM05D000172 ORTHO05D004529 1.7e-10 68.9 36 77.8
THA.LOC104826128 Tarenaya hassleriana HOM05D000172 ORTHO05D004529 1.7e-10 68.9 38 73.7
Aa31LG5G4580 Aethionema arabicum HOM05D000172 ORTHO05D004529 3.8e-10 67.8 35 80.0
Gohir.A11G152400 Gossypium hirsutum HOM05D000172 ORTHO05D004529 6.4e-10 67.0 36 75.0
Sabra14G0121700 Salix brachista HOM05D000172 ORTHO05D004529 6.4e-10 67.0 36 75.0
Hma1.2p1_0445F.1_g154200 Hydrangea macrophylla HOM05D000172 ORTHO05D004529 8.4e-10 66.6 36 72.2
Hma1.2p1_2840F.1_g329340 Hydrangea macrophylla HOM05D000172 ORTHO05D004529 8.4e-10 66.6 36 72.2
Sed0015934 Sechium edule HOM05D000172 ORTHO05D004529 8.4e-10 66.6 36 75.0
Nitab4.5_0000130g0060 Nicotiana tabacum HOM05D000172 ORTHO05D004529 1.1e-09 66.2 36 75.0
MELO3C019722.2 Cucumis melo HOM05D000172 ORTHO05D004529 1.4e-09 65.9 36 75.0
CsaV3_6G015540 Cucumis sativus L. HOM05D000172 ORTHO05D004529 1.4e-09 65.9 36 75.0
Potri.014G160000 Populus trichocarpa HOM05D000172 ORTHO05D004529 1.9e-09 65.5 36 72.2
EL10Ac9g22817 Beta vulgaris HOM05D000172 ORTHO05D004529 2.4e-09 65.1 36 77.8
AT1G04980 Arabidopsis thaliana HOM05D000172 ORTHO05D004529 3.2e-09 64.7 38 71.1
Gohir.D11G159300 Gossypium hirsutum HOM05D000172 ORTHO05D004529 3.2e-09 64.7 35 74.3
Gorai.007G169700 Gossypium raimondii HOM05D000172 ORTHO05D004529 3.2e-09 64.7 35 74.3
THA.LOC104801013 Tarenaya hassleriana HOM05D000172 ORTHO05D004529 3.2e-09 64.7 38 65.8
AL1G14710 Arabidopsis lyrata HOM05D000172 ORTHO05D004529 4.2e-09 64.3 38 68.4
arahy.Tifrunner.gnm1.ann1.0SG038 Arachis hypogaea HOM05D000172 ORTHO05D004529 4.2e-09 64.3 36 72.2
arahy.Tifrunner.gnm1.ann1.0YR97U Arachis hypogaea HOM05D000172 ORTHO05D004529 4.2e-09 64.3 36 72.2
ClCG02G018150 Citrullus lanatus HOM05D000172 ORTHO05D004529 4.2e-09 64.3 36 72.2
QL08p030114 Quercus lobata HOM05D000172 ORTHO05D004529 4.2e-09 64.3 36 69.4
FvH4_6g41940 Fragaria vesca HOM05D000172 ORTHO05D004529 5.4e-09 63.9 38 63.2
FAN02G0745 Fragaria x ananassa HOM05D000172 ORTHO05D004529 5.4e-09 63.9 38 63.2
FAN09G3260 Fragaria x ananassa HOM05D000172 ORTHO05D004529 5.4e-09 63.9 38 63.2
FAN14G3661 Fragaria x ananassa HOM05D000172 ORTHO05D004529 5.4e-09 63.9 38 63.2
Phvul.008G215100 Phaseolus vulgaris HOM05D000172 ORTHO05D004529 5.4e-09 63.9 35 74.3
RcHm_v2.0_Chr2g0157821 Rosa chinensis HOM05D000172 ORTHO05D004529 5.4e-09 63.9 38 63.2
VMungo0647G1522 Vigna mungo HOM05D000172 ORTHO05D004529 5.4e-09 63.9 35 74.3
MSTRG.14865 Avicennia marina HOM05D000172 ORTHO05D004529 7.1e-09 63.5 38 68.4
HPP92_018301 Vanilla planifolia HOM05D000172 ORTHO05D004529 7.1e-09 63.5 36 69.4
CANSAT64G0513 Cannabis sativa HOM05D000172 ORTHO05D004529 9.3e-09 63.2 36 72.2
Ca_06051_v3 Cicer arietinum L. HOM05D000172 ORTHO05D004529 9.3e-09 63.2 36 69.4
LjContig00029g0026614 Lotus japonicus HOM05D000172 ORTHO05D004529 9.3e-09 63.2 36 72.2
HPP92_018317 Vanilla planifolia HOM05D000172 ORTHO05D004529 9.3e-09 63.2 36 69.4
Aa31LG1G19810 Aethionema arabicum HOM05D000172 ORTHO05D004529 1.2e-08 62.8 36 72.2
CiPaw.04G108900 Carya illinoinensis HOM05D000172 ORTHO05D004529 1.2e-08 62.8 36 69.4
COL.COLO4_07252 Corchorus olitorius HOM05D000172 ORTHO05D004529 1.2e-08 62.8 36 69.4
Dinv08710 Davidia involucrata HOM05D000172 ORTHO05D004529 1.2e-08 62.8 36 69.4
FAN05G4236 Fragaria x ananassa HOM05D000172 ORTHO05D004529 1.2e-08 62.8 36 66.7
Glyma.14G050600 Glycine max HOM05D000172 ORTHO05D004529 1.2e-08 62.8 36 69.4
Lalb_Chr10g0105541 Lupinus albus HOM05D000172 ORTHO05D004529 1.2e-08 62.8 36 69.4
Lalb_Chr17g0347151 Lupinus albus HOM05D000172 ORTHO05D004529 1.2e-08 62.8 36 69.4
Peaxi162Scf01333g00016 Petunia axillaris HOM05D000172 ORTHO05D004529 1.2e-08 62.8 36 69.4
Psat2g026680 Pisum sativum HOM05D000172 ORTHO05D004529 1.2e-08 62.8 36 69.4
PGR142G0986 Punica granatum HOM05D000172 ORTHO05D004529 1.2e-08 62.8 38 68.4
Solyc07g049450.3 Solanum lycopersicum HOM05D000172 ORTHO05D004529 1.2e-08 62.8 36 69.4
Sopen07g024800 Solanum pennellii HOM05D000172 ORTHO05D004529 1.2e-08 62.8 36 69.4
CDE07G0353 Ceratophyllum demersum HOM05D000172 ORTHO05D004529 1.6e-08 62.4 37 67.6
Duzib138G0538 Durio zibethinus HOM05D000172 ORTHO05D004529 1.6e-08 62.4 36 66.7
Glyma.02G266900 Glycine max HOM05D000172 ORTHO05D004529 1.6e-08 62.4 36 69.4
Nn1g03356 Nelumbo nucifera HOM05D000172 ORTHO05D004529 1.6e-08 62.4 36 66.7
PGSC0003DMG400000661 Solanum tuberosum HOM05D000172 ORTHO05D004529 1.6e-08 62.4 36 69.4
Ah.14g083060 Amaranthus hybridus HOM05D000172 ORTHO05D004529 2.1e-08 62.0 36 69.4
Aqoxy1G02876 Aquilegia oxysepala HOM05D000172 ORTHO05D004529 2.1e-08 62.0 36 66.7
MD17G1107800 Malus domestica HOM05D000172 ORTHO05D004529 2.1e-08 62.0 38 63.2
Manes.12G068300 Manihot esculenta HOM05D000172 ORTHO05D004529 2.1e-08 62.0 36 69.4
TPR.G25669 Trifolium pratense HOM05D000172 ORTHO05D004529 2.1e-08 62.0 36 69.4
Carub.0001s0422 Capsella rubella HOM05D000172 ORTHO05D004529 2.7e-08 61.6 38 65.8
Cfa014306 Carpinus fangiana HOM05D000172 ORTHO05D004529 2.7e-08 61.6 36 66.7
CDE04G1854 Ceratophyllum demersum HOM05D000172 ORTHO05D004529 2.7e-08 61.6 38 63.2
Nn1g07319 Nelumbo nucifera HOM05D000172 ORTHO05D004529 2.7e-08 61.6 38 60.5
PSO210G3915 Papaver somniferum HOM05D000172 ORTHO05D004529 2.7e-08 61.6 36 63.9
Actinidia09754 Actinidia chinensis HOM05D000172 ORTHO05D004529 3.5e-08 61.2 36 66.7
BolC5t29097H Brassica oleracea HOM05D000172 ORTHO05D004529 3.5e-08 61.2 38 71.1
Ciclev10015327m.g Citrus clementina HOM05D000172 ORTHO05D004529 3.5e-08 61.2 36 63.9
Haze_12753 Corylus avellana HOM05D000172 ORTHO05D004529 3.5e-08 61.2 36 66.7
SMO146G0260 Selaginella moellendorffii HOM05D000172 ORTHO05D004529 3.5e-08 61.2 38 71.1
CiPaw.03G153600 Carya illinoinensis HOM05D000172 ORTHO05D004529 4.6e-08 60.8 36 66.7
Thhalv10007682m.g Eutrema salsugineum HOM05D000172 ORTHO05D004529 4.6e-08 60.8 38 65.8
Gohir.D07G174500 Gossypium hirsutum HOM05D000172 ORTHO05D004529 4.6e-08 60.8 36 69.4
Gorai.001G195100 Gossypium raimondii HOM05D000172 ORTHO05D004529 4.6e-08 60.8 36 69.4
MBI16_g26178_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D004529 4.6e-08 60.8 38 65.8
SalBow1G3887 Salvia bowleyana HOM05D000172 ORTHO05D004529 4.6e-08 60.8 38 63.2
SalBow1G7178 Salvia bowleyana HOM05D000172 ORTHO05D004529 4.6e-08 60.8 38 63.2
TWI75G1599 Tripterygium wilfordii HOM05D000172 ORTHO05D004529 4.6e-08 60.8 38 63.2
A10p03460 Brassica napus HOM05D000172 ORTHO05D004529 6.0e-08 60.5 36 72.2
C05p03170 Brassica napus HOM05D000172 ORTHO05D004529 6.0e-08 60.5 36 72.2
BraA10t42622Z Brassica rapa HOM05D000172 ORTHO05D004529 6.0e-08 60.5 36 72.2
CSS0045460 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D004529 6.0e-08 60.5 34 70.6
Lalb_Chr04g0250171 Lupinus albus HOM05D000172 ORTHO05D004529 6.0e-08 60.5 36 63.9
SHI10092 Sapria himalayana HOM05D000172 ORTHO05D004529 6.0e-08 60.5 35 71.4
Thecc.01G183900 Theobroma cacao HOM05D000172 ORTHO05D004529 6.0e-08 60.5 36 63.9
Lsat_1_v5_gn_9_105181 Lactuca sativa HOM05D000172 ORTHO05D004529 7.9e-08 60.1 36 66.7
MD09G1116100 Malus domestica HOM05D000172 ORTHO05D004529 7.9e-08 60.1 38 57.9
Oeu010999.1 Olea europaea HOM05D000172 ORTHO05D004529 7.9e-08 60.1 36 66.7
PSO832G1111 Papaver somniferum HOM05D000172 ORTHO05D004529 7.9e-08 60.1 38 57.9
Sc12g0002030 Simmondsia chinensis HOM05D000172 ORTHO05D004529 7.9e-08 60.1 36 69.4
TWI36G0304 Tripterygium wilfordii HOM05D000172 ORTHO05D004529 7.9e-08 60.1 38 63.2
vmacro12149 Vaccinium macrocarpon HOM05D000172 ORTHO05D004529 7.9e-08 60.1 36 63.9
Atru.chr6.3272 Acer truncatum HOM05D000172 ORTHO05D004529 1.0e-07 59.7 36 61.1
AUR62015115 Chenopodium quinoa HOM05D000172 ORTHO05D004529 1.0e-07 59.7 36 66.7
AUR62017578 Chenopodium quinoa HOM05D000172 ORTHO05D004529 1.0e-07 59.7 36 66.7
DCAR_019739 Daucus carota HOM05D000172 ORTHO05D004529 1.0e-07 59.7 36 61.1
Cpa.g.sc132.36 Carica papaya HOM05D000172 ORTHO05D004529 1.3e-07 59.3 36 66.7
Duzib133G0852 Durio zibethinus HOM05D000172 ORTHO05D004529 1.3e-07 59.3 35 65.7
Gohir.A07G168200 Gossypium hirsutum HOM05D000172 ORTHO05D004529 1.3e-07 59.3 36 66.7
HanXRQChr14g0429281 Helianthus annuus HOM05D000172 ORTHO05D004529 1.3e-07 59.3 36 66.7
Hund24209 Selenicereus undatus HOM05D000172 ORTHO05D004529 1.3e-07 59.3 36 66.7
TWI18G0101 Tripterygium wilfordii HOM05D000172 ORTHO05D004529 1.3e-07 59.3 38 60.5
Zm00001eb314620 Zea mays HOM05D000172 ORTHO05D004529 1.3e-07 59.3 36 63.9
Cc05_g02520 Coffea canephora HOM05D000172 ORTHO05D004529 1.8e-07 58.9 36 63.9
Oeu054513.2 Olea europaea HOM05D000172 ORTHO05D004529 1.8e-07 58.9 36 63.9
Rhsim06G0169300 Rhododendron simsii HOM05D000172 ORTHO05D004529 1.8e-07 58.9 36 61.1
Sp1g03850 Schrenkiella parvula HOM05D000172 ORTHO05D004529 1.8e-07 58.9 36 69.4
TAR624G0902 Trochodendron aralioides HOM05D000172 ORTHO05D004529 1.8e-07 58.9 36 63.9
Zm00001eb100620 Zea mays HOM05D000172 ORTHO05D004529 1.8e-07 58.9 36 63.9
ATR1128G012 Amborella trichopoda HOM05D000172 ORTHO05D004529 2.3e-07 58.5 36 58.3
Lj8A130T58 Lonicera japonica HOM05D000172 ORTHO05D004529 2.3e-07 58.5 36 63.9
Actinidia13730 Actinidia chinensis HOM05D000172 ORTHO05D004529 3.0e-07 58.2 36 61.1
Migut.H01249 Erythranthe guttata HOM05D000172 ORTHO05D004529 3.0e-07 58.2 35 65.7
Medtr5g084930 Medicago truncatula HOM05D000172 ORTHO05D004529 3.0e-07 58.2 37 67.6
ECA240G4132 Erigeron canadensis HOM05D002544 ORTHO05D004529 3.9e-07 57.8 36 63.9
Prupe.3G208600 Prunus persica HOM05D000172 ORTHO05D004529 3.9e-07 57.8 36 61.1
SGA_v2.0_scaffold49G18360 Striga asiatica HOM05D000172 ORTHO05D004529 5.1e-07 57.4 36 61.1
Eucgr.K00732 Eucalyptus grandis HOM05D000172 ORTHO05D004529 6.7e-07 57.0 36 61.1
GSVIVG01030525001 Vitis vinifera HOM05D000172 ORTHO05D004529 6.7e-07 57.0 35 65.7
CARHR004390 Cardamine hirsuta HOM05D000172 ORTHO05D004529 8.7e-07 56.6 37 64.9
DCAR_021129 Daucus carota HOM05D000172 ORTHO05D004529 8.7e-07 56.6 36 55.6
CAN.G1254.2 Capsicum annuum HOM05D000172 ORTHO05D004529 1.9e-06 55.5 45 55.6
Lj1A784T46 Lonicera japonica HOM05D000172 ORTHO05D004529 3.3e-06 54.7 36 58.3
HPP92_018319 Vanilla planifolia HOM05D000172 ORTHO05D004529 3.3e-06 54.7 36 58.3


User provided reference genes

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