Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28606 Brassica carinata HOM05D003691 ORTHO05D004288 0.0e+00 1238.8 617 100.0
A04p25040 Brassica napus HOM05D003691 ORTHO05D004288 1.4e-294 1015.8 676 79.9
BraA04t18015Z Brassica rapa HOM05D003691 ORTHO05D004288 2.5e-291 1005.0 679 79.4
Sp4g14920 Schrenkiella parvula HOM05D003691 ORTHO05D004288 2.9e-287 991.5 676 78.0
A05p13290 Brassica napus HOM05D003691 ORTHO05D004288 2.3e-284 981.9 678 77.4
BraA05t20270Z Brassica rapa HOM05D003691 ORTHO05D004288 2.5e-283 978.4 679 77.3
C04p17080 Brassica napus HOM05D003691 ORTHO05D004288 2.8e-282 974.9 678 76.7
Thhalv10016359m.g Eutrema salsugineum HOM05D003691 ORTHO05D004288 1.8e-281 972.2 676 76.6
AL4G27990 Arabidopsis lyrata HOM05D003691 ORTHO05D004288 2.4e-281 971.8 675 76.1
BolC4t23260H Brassica oleracea HOM05D003691 ORTHO05D004288 2.9e-279 964.9 693 75.0
AT2G32590 Arabidopsis thaliana HOM05D003691 ORTHO05D004288 9.7e-275 949.9 679 74.2
Carub.0004s1392 Capsella rubella HOM05D003691 ORTHO05D004288 9.1e-273 943.3 675 74.4
CARHR126440 Cardamine hirsuta HOM05D003691 ORTHO05D004288 2.7e-269 931.8 678 73.6
Aa31LG5G4740 Aethionema arabicum HOM05D003691 ORTHO05D004288 4.2e-254 881.3 672 69.8
BcaB06g28605 Brassica carinata HOM05D003691 ORTHO05D004288 2.2e-234 815.8 628 72.8
BolC4t27689H Brassica oleracea HOM05D003691 ORTHO05D004288 3.5e-232 808.5 535 80.9
THA.LOC104816038 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 9.5e-222 773.9 673 63.7
THA.LOC104826143 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 8.3e-218 760.8 683 63.1
BcaB02g10460 Brassica carinata HOM05D003691 ORTHO05D004288 1.4e-212 743.4 505 78.2
C04p62100 Brassica napus HOM05D003691 ORTHO05D004288 2.4e-196 689.5 463 80.6
BcaC02g07908 Brassica carinata HOM05D003691 ORTHO05D004288 9.0e-196 687.6 639 62.6
GSVIVG01030475001 Vitis vinifera HOM05D003691 ORTHO05D004288 7.4e-190 667.9 673 56.8
Atru.chr6.3228 Acer truncatum HOM05D003691 ORTHO05D004288 9.0e-188 661.0 679 56.1
Duzib138G0684 Durio zibethinus HOM05D003691 ORTHO05D004288 2.6e-187 659.4 668 56.4
Gohir.D07G088400 Gossypium hirsutum HOM05D003691 ORTHO05D004288 1.7e-186 656.8 667 55.2
CiPaw.03G157800 Carya illinoinensis HOM05D003691 ORTHO05D004288 8.4e-186 654.4 678 56.0
Gohir.A07G081900 Gossypium hirsutum HOM05D003691 ORTHO05D004288 1.4e-185 653.7 678 54.4
Gorai.001G094600 Gossypium raimondii HOM05D003691 ORTHO05D004288 7.1e-185 651.4 677 54.5
TWI75G0495 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 9.3e-185 651.0 674 55.8
Thecc.01G178100 Theobroma cacao HOM05D003691 ORTHO05D004288 4.6e-184 648.7 666 55.9
QL08p031532 Quercus lobata HOM05D003691 ORTHO05D004288 6.0e-184 648.3 672 56.4
Ciclev10014542m.g Citrus clementina HOM05D003691 ORTHO05D004288 3.9e-183 645.6 677 54.8
TWI36G1355 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 9.6e-182 641.0 676 54.4
CANSAT64G0165 Cannabis sativa HOM05D003691 ORTHO05D004288 3.7e-181 639.0 670 55.7
MD09G1071300 Malus domestica HOM05D003691 ORTHO05D004288 3.4e-179 632.5 678 55.6
Duzib211G0477 Durio zibethinus HOM05D003691 ORTHO05D004288 1.7e-178 630.2 668 54.3
Hma1.2p1_0895F.1_g233770 Hydrangea macrophylla HOM05D003691 ORTHO05D004288 2.2e-178 629.8 675 54.5
Prupe.3G213700 Prunus persica HOM05D003691 ORTHO05D004288 2.2e-178 629.8 675 54.1
Haze_12800 Corylus avellana HOM05D003691 ORTHO05D004288 2.9e-178 629.4 681 54.8
Manes.04G099700 Manihot esculenta HOM05D003691 ORTHO05D004288 1.1e-177 627.5 678 53.7
FAN14G5114 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.5e-177 626.3 676 53.4
FAN05G1959 Fragaria x ananassa HOM05D003691 ORTHO05D004288 4.2e-177 625.5 676 53.1
RcHm_v2.0_Chr2g0158621 Rosa chinensis HOM05D003691 ORTHO05D004288 5.5e-177 625.2 678 53.2
Sed0022442 Sechium edule HOM05D003691 ORTHO05D004288 1.6e-176 623.6 678 53.4
FAN09G0430 Fragaria x ananassa HOM05D003691 ORTHO05D004288 6.1e-176 621.7 677 53.3
vmacro09345 Vaccinium macrocarpon HOM05D003691 ORTHO05D004288 1.8e-175 620.2 685 53.6
Dinv08745 Davidia involucrata HOM05D003691 ORTHO05D004288 3.0e-175 619.4 671 54.7
Rhsim04G0052200 Rhododendron simsii HOM05D003691 ORTHO05D004288 3.0e-175 619.4 693 53.8
Potri.014G155900 Populus trichocarpa HOM05D003691 ORTHO05D004288 1.5e-174 617.1 681 53.3
FvH4_6g42730 Fragaria vesca HOM05D003691 ORTHO05D004288 3.3e-174 615.9 686 52.5
Sabra14G0117900 Salix brachista HOM05D003691 ORTHO05D004288 1.3e-173 614.0 674 53.6
Lalb_Chr03g0028581 Lupinus albus HOM05D003691 ORTHO05D004288 1.6e-173 613.6 680 53.5
Dinv39731 Davidia involucrata HOM05D003691 ORTHO05D004288 6.3e-173 611.7 679 53.9
CsaV3_2G034670 Cucumis sativus L. HOM05D003691 ORTHO05D004288 1.4e-172 610.5 675 52.7
ClCG02G009060 Citrullus lanatus HOM05D003691 ORTHO05D004288 2.4e-172 609.8 678 52.9
Ca_19493_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 9.0e-172 607.8 650 53.1
Nn1g03443 Nelumbo nucifera HOM05D003691 ORTHO05D004288 1.5e-171 607.1 681 53.9
MELO3C019300.2 Cucumis melo HOM05D003691 ORTHO05D004288 4.5e-171 605.5 675 52.4
DCAR_019753 Daucus carota HOM05D003691 ORTHO05D004288 7.7e-171 604.7 673 52.5
PGR042G1566 Punica granatum HOM05D003691 ORTHO05D004288 2.2e-170 603.2 677 53.5
Migut.M00432 Erythranthe guttata HOM05D003691 ORTHO05D004288 2.5e-169 599.7 676 52.5
Eucgr.A01107 Eucalyptus grandis HOM05D003691 ORTHO05D004288 1.2e-168 597.4 676 52.8
arahy.Tifrunner.gnm1.ann1.AS5DTW Arachis hypogaea HOM05D003691 ORTHO05D004288 1.6e-168 597.0 682 52.3
arahy.Tifrunner.gnm1.ann1.4D79G7 Arachis hypogaea HOM05D003691 ORTHO05D004288 3.6e-168 595.9 682 52.2
Lj8A127T48 Lonicera japonica HOM05D003691 ORTHO05D004288 4.6e-168 595.5 588 57.3
Glyma.06G308100 Glycine max HOM05D003691 ORTHO05D004288 6.1e-168 595.1 670 51.5
Medtr4g050060 Medicago truncatula HOM05D003691 ORTHO05D004288 6.1e-168 595.1 674 51.9
TAR624G0007 Trochodendron aralioides HOM05D003691 ORTHO05D004288 7.9e-168 594.7 676 51.3
Glyma.12G096700 Glycine max HOM05D003691 ORTHO05D004288 1.0e-167 594.3 672 51.9
FAN02G0990 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.3e-167 593.2 678 51.2
MBI07_g01730_MAGBIO Magnolia biondii HOM05D003691 ORTHO05D004288 9.7e-166 587.8 657 53.3
SGA_v2.0_scaffold70G23393 Striga asiatica HOM05D003691 ORTHO05D004288 3.7e-165 585.9 680 51.9
Sopen07g025100 Solanum pennellii HOM05D003691 ORTHO05D004288 1.8e-164 583.6 671 52.8
MSTRG.14857 Avicennia marina HOM05D003691 ORTHO05D004288 4.1e-164 582.4 677 51.6
Solyc07g049680.4 Solanum lycopersicum HOM05D003691 ORTHO05D004288 9.1e-164 581.3 671 52.6
Lj3g0007999 Lotus japonicus HOM05D003691 ORTHO05D004288 1.5e-163 580.5 676 51.6
TPR.G4630 Trifolium pratense HOM05D003691 ORTHO05D004288 3.4e-163 579.3 684 50.0
PGSC0003DMG400001077 Solanum tuberosum HOM05D003691 ORTHO05D004288 4.5e-163 578.9 671 52.3
PSO210G5093 Papaver somniferum HOM05D003691 ORTHO05D004288 5.9e-163 578.6 671 52.3
Sc12g0002210 Simmondsia chinensis HOM05D003691 ORTHO05D004288 5.9e-163 578.6 687 50.1
Cc05_g03670 Coffea canephora HOM05D003691 ORTHO05D004288 1.7e-162 577.0 716 49.2
QL08p006881 Quercus lobata HOM05D003691 ORTHO05D004288 1.7e-162 577.0 673 51.4
Oeu027232.1 Olea europaea HOM05D003691 ORTHO05D004288 6.5e-162 575.1 668 51.3
CAN.G290.10 Capsicum annuum HOM05D003691 ORTHO05D004288 1.4e-161 573.9 656 51.8
Nitab4.5_0000130g0240 Nicotiana tabacum HOM05D003691 ORTHO05D004288 2.7e-160 569.7 675 51.7
Nitab4.5_0015742g0010 Nicotiana tabacum HOM05D003691 ORTHO05D004288 6.1e-160 568.5 675 52.0
DCAR_021155 Daucus carota HOM05D003691 ORTHO05D004288 1.0e-159 567.8 667 50.8
Phvul.011G101300 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 1.4e-159 567.4 675 49.9
Psat7g203760 Pisum sativum HOM05D003691 ORTHO05D004288 1.4e-159 567.4 671 50.2
HanXRQChr04g0126971 Helianthus annuus HOM05D003691 ORTHO05D004288 2.3e-159 566.6 679 50.8
ECA240G1119 Erigeron canadensis HOM05D003691 ORTHO05D004288 5.1e-159 565.5 685 49.8
ECA236G1051 Erigeron canadensis HOM05D003691 ORTHO05D004288 7.4e-158 561.6 679 50.5
SalBow7G1078 Salvia bowleyana HOM05D003691 ORTHO05D004288 9.7e-158 561.2 691 51.2
Aqoxy1G03453 Aquilegia oxysepala HOM05D003691 ORTHO05D004288 1.2e-155 554.3 682 49.0
Cfa020301 Carpinus fangiana HOM05D003691 ORTHO05D004288 5.9e-155 552.0 675 50.4
Ah.06g182530 Amaranthus hybridus HOM05D003691 ORTHO05D004288 1.3e-154 550.8 683 49.2
TPR.G4243 Trifolium pratense HOM05D003691 ORTHO05D004288 2.2e-154 550.1 698 48.6
VMungo1127G0496 Vigna mungo HOM05D003691 ORTHO05D004288 2.9e-154 549.7 677 49.2
Glyma.12G191300 Glycine max HOM05D003691 ORTHO05D004288 1.2e-152 544.3 679 49.3
Medtr2g087880 Medicago truncatula HOM05D003691 ORTHO05D004288 2.3e-151 540.0 675 48.1
Ca_01616_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 3.9e-151 539.3 713 47.3
AUR62015833 Chenopodium quinoa HOM05D003691 ORTHO05D004288 8.8e-151 538.1 707 47.5
Lsat_1_v5_gn_7_93200 Lactuca sativa HOM05D003691 ORTHO05D004288 8.8e-151 538.1 677 49.3
VMungo1080G0849 Vigna mungo HOM05D003691 ORTHO05D004288 1.1e-150 537.7 677 48.7
EL10Ac4g07751 Beta vulgaris HOM05D003691 ORTHO05D004288 2.0e-150 537.0 696 47.7
TAR626G1388 Trochodendron aralioides HOM05D003691 ORTHO05D004288 2.0e-150 537.0 608 51.3
Hund02023 Selenicereus undatus HOM05D003691 ORTHO05D004288 1.7e-149 533.9 710 47.9
Psat5g261240 Pisum sativum HOM05D003691 ORTHO05D004288 4.8e-149 532.3 676 47.9
Cpa.g.sc87.104 Carica papaya HOM05D003691 ORTHO05D004288 6.3e-149 531.9 518 58.5
Phvul.005G116900 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 6.3e-149 531.9 665 49.0
Thecc.07G031000 Theobroma cacao HOM05D003691 ORTHO05D004288 6.3e-149 531.9 675 49.0
Atru.chr2.3500 Acer truncatum HOM05D003691 ORTHO05D004288 1.8e-148 530.4 686 48.5
Peaxi162Scf00007g00129 Petunia axillaris HOM05D003691 ORTHO05D004288 2.9e-146 523.1 652 49.7
Lsat_1_v5_gn_9_106740 Lactuca sativa HOM05D003691 ORTHO05D004288 1.0e-143 514.6 657 49.9
Prupe.4G220400 Prunus persica HOM05D003691 ORTHO05D004288 1.4e-143 514.2 682 47.4
LjContig00274_ERROPOS1100000g0006521 Lotus japonicus HOM05D003691 ORTHO05D004288 6.8e-143 511.9 609 50.4
CSS0013476 Camellia sinensis var. sinensis HOM05D003691 ORTHO05D004288 1.6e-139 500.7 513 56.9
Haze_09719 Corylus avellana HOM05D003691 ORTHO05D004288 3.5e-139 499.6 700 45.7
Ciclev10007620m.g Citrus clementina HOM05D003691 ORTHO05D004288 3.8e-138 496.1 710 46.8
ATR0317G123 Amborella trichopoda HOM05D003691 ORTHO05D004288 6.5e-138 495.4 668 47.2
MD11G1212100 Malus domestica HOM05D003691 ORTHO05D004288 7.7e-131 471.9 642 46.4
RcHm_v2.0_Chr5g0041001 Rosa chinensis HOM05D003691 ORTHO05D004288 9.5e-129 464.9 659 46.3
FvH4_3g23280 Fragaria vesca HOM05D003691 ORTHO05D004288 2.8e-128 463.4 662 45.2
HPP92_023149 Vanilla planifolia HOM05D003691 ORTHO05D004288 3.0e-127 459.9 656 45.9
Zm00001eb162990 Zea mays HOM05D003691 ORTHO05D004288 6.8e-127 458.8 613 48.5
CiPaw.11G193000 Carya illinoinensis HOM05D003691 ORTHO05D004288 2.5e-121 440.3 510 50.4
GSVIVG01037701001 Vitis vinifera HOM05D003691 ORTHO05D004288 7.3e-121 438.7 652 45.9
FAN11G2344 Fragaria x ananassa HOM05D003691 ORTHO05D004288 9.5e-121 438.3 611 45.7
Hund02022 Selenicereus undatus HOM05D003691 ORTHO05D004288 1.0e-119 434.9 683 42.9
FAN21G2044 Fragaria x ananassa HOM05D003691 ORTHO05D004288 4.4e-118 429.5 628 45.2
Hund02025 Selenicereus undatus HOM05D003691 ORTHO05D004288 7.0e-116 422.2 688 41.0
AUR62020387 Chenopodium quinoa HOM05D003691 ORTHO05D004288 1.3e-114 417.9 675 42.2
unitig_60.g25819 Utricularia gibba HOM05D003691 ORTHO05D004288 1.9e-113 414.1 657 40.9
Gohir.A07G186000 Gossypium hirsutum HOM05D003691 ORTHO05D004288 1.7e-109 401.0 443 52.1
Dinv22243 Davidia involucrata HOM05D003691 ORTHO05D004288 2.9e-109 400.2 534 47.8
AUR62015832 Chenopodium quinoa HOM05D003691 ORTHO05D004288 1.2e-107 394.8 594 42.9
COL.COLO4_09704 Corchorus olitorius HOM05D003691 ORTHO05D004288 1.6e-99 367.9 508 47.0
Actinidia10811 Actinidia chinensis HOM05D003691 ORTHO05D004288 1.5e-97 361.3 434 52.1
Pp3c11_22430 Physcomitrium patens HOM05D003691 ORTHO05D004288 1.9e-97 360.9 617 40.0
Lj8A171G44 Lonicera japonica HOM05D003691 ORTHO05D004288 2.2e-93 347.4 459 46.6
SEGI_30766 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 1.6e-88 331.3 521 41.5
Mapoly0002s0133 Marchantia polymorpha HOM05D003691 ORTHO05D004288 8.1e-88 328.9 641 37.3
Lalb_Chr19g0136071 Lupinus albus HOM05D003691 ORTHO05D004288 6.4e-85 319.3 367 52.0
AUR62020385 Chenopodium quinoa HOM05D003691 ORTHO05D004288 4.2e-84 316.6 327 53.8
AagrBONN_evm.TU.Sc2ySwM_228.2537 Anthoceros agrestis HOM05D003691 ORTHO05D004288 4.8e-80 303.1 631 36.9
SEGI_37895 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 4.8e-80 303.1 495 41.8
CBR_g26183 Chara braunii HOM05D003691 ORTHO05D004288 3.3e-73 280.4 733 32.6
FAN25G2100 Fragaria x ananassa HOM05D003691 ORTHO05D004288 4.8e-72 276.6 284 56.0
Lalb_Chr19g0136061 Lupinus albus HOM05D003691 ORTHO05D004288 1.4e-71 275.0 290 53.4
Oeu036739.1 Olea europaea HOM05D003691 ORTHO05D004288 1.8e-71 274.6 268 58.6
Pp3c7_4280 Physcomitrium patens HOM05D003691 ORTHO05D004288 1.8e-71 274.6 644 34.6
MD03G1195700 Malus domestica HOM05D003691 ORTHO05D004288 2.0e-70 271.2 414 42.5
PRCOL_00002032 Prasinoderma coloniale HOM05D003691 ORTHO05D004288 3.9e-58 230.3 628 33.8
MCO04G245 Micromonas commoda HOM05D003691 ORTHO05D004288 9.0e-55 219.2 615 31.2
SHI10368 Sapria himalayana HOM05D003691 ORTHO05D004288 1.4e-52 211.8 399 41.1
Os01g0532800 Oryza sativa ssp. japonica HOM05D003691 ORTHO05D004288 1.8e-50 204.9 304 40.5
FAN25G2879 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.3e-48 198.7 365 37.5
MD17G1101300 Malus domestica HOM05D003691 ORTHO05D004288 1.1e-47 195.7 257 45.1
C04p62090 Brassica napus HOM05D003691 ORTHO05D004288 6.9e-47 193.0 136 72.8
Actinidia10812 Actinidia chinensis HOM05D003691 ORTHO05D004288 7.2e-44 183.0 201 50.7
Cfa026695 Carpinus fangiana HOM05D003691 ORTHO05D004288 2.5e-36 157.9 695 27.6
Sed0010458 Sechium edule HOM05D003691 ORTHO05D004288 1.3e-29 135.6 244 38.9
CDE09G1127 Ceratophyllum demersum HOM05D003691 ORTHO05D004288 1.0e-26 125.9 209 40.7
CAN.G574.39 Capsicum annuum HOM05D003691 ORTHO05D004288 1.3e-21 109.0 88 62.5
Lj8A171G43 Lonicera japonica HOM05D003691 ORTHO05D004288 1.5e-20 105.5 154 44.2
arahy.Tifrunner.gnm1.ann1.NAA2I0 Arachis hypogaea HOM05D003691 ORTHO05D004288 1.6e-19 102.1 61 82.0
MD03G1195600 Malus domestica HOM05D003691 ORTHO05D004288 2.7e-19 101.3 142 46.5
SEGI_15855 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 2.7e-19 101.3 91 59.3
CAN.G574.40 Capsicum annuum HOM05D003691 ORTHO05D004288 2.6e-17 94.7 66 69.7
SEGI_16706 Sequoiadendron giganteum HOM05D003691 ORTHO05D017750 7.5e-17 93.2 102 53.9
Dinv22244 Davidia involucrata HOM05D007542 ORTHO05D009519 6.3e-16 90.1 85 56.5
EL10Ac4g08622 Beta vulgaris HOM05D003691 ORTHO05D019836 5.0e-13 80.5 64 60.9
SHI10370 Sapria himalayana HOM05D000105 ORTHO05D000023 5.2e-10 70.5 40 82.5
MD17G1101000 Malus domestica HOM05D003691 ORTHO05D004288 4.4e-09 67.4 46 65.2
TPR.G2961 Trifolium pratense HOM05D001978 ORTHO05D003036 5.7e-09 67.0 45 62.2
MD17G1101200 Malus domestica HOM05D003691 ORTHO05D004288 7.5e-09 66.6 115 40.9
Rhsim07G0255900 Rhododendron simsii HOM05D000234 ORTHO05D004288 1.3e-08 65.9 133 36.1
Glyma.13G310451 Glycine max HOM05D003691 ORTHO05D004288 1.7e-08 65.5 50 56.0
ATR0772G025 Amborella trichopoda HOM05D003691 ORTHO05D004288 4.6e-06 57.4 107 34.6
Cre13.g589300 Chlamydomonas reinhardtii HOM05D003691 ORTHO05D004288 4.6e-06 57.4 217 23.0


User provided reference genes

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