Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28605 Brassica carinata HOM05D003691 ORTHO05D004288 0.0e+00 1266.9 636 100.0
BraA04t18015Z Brassica rapa HOM05D003691 ORTHO05D004288 3.9e-303 1044.3 636 86.3
A04p25040 Brassica napus HOM05D003691 ORTHO05D004288 1.1e-302 1042.7 636 86.8
Sp4g14920 Schrenkiella parvula HOM05D003691 ORTHO05D004288 6.9e-292 1006.9 632 84.8
BraA05t20270Z Brassica rapa HOM05D003691 ORTHO05D004288 4.9e-290 1000.7 666 80.9
A05p13290 Brassica napus HOM05D003691 ORTHO05D004288 5.5e-289 997.3 666 81.1
C04p17080 Brassica napus HOM05D003691 ORTHO05D004288 1.0e-287 993.0 634 83.9
BolC4t23260H Brassica oleracea HOM05D003691 ORTHO05D004288 2.5e-286 988.4 649 82.0
Thhalv10016359m.g Eutrema salsugineum HOM05D003691 ORTHO05D004288 1.6e-285 985.7 625 84.3
AL4G27990 Arabidopsis lyrata HOM05D003691 ORTHO05D004288 2.0e-283 978.8 666 79.7
AT2G32590 Arabidopsis thaliana HOM05D003691 ORTHO05D004288 5.7e-278 960.7 634 81.4
CARHR126440 Cardamine hirsuta HOM05D003691 ORTHO05D004288 3.1e-276 954.9 631 80.2
Carub.0004s1392 Capsella rubella HOM05D003691 ORTHO05D004288 6.5e-274 947.2 625 81.4
Aa31LG5G4740 Aethionema arabicum HOM05D003691 ORTHO05D004288 2.7e-240 835.5 666 69.2
BcaB02g10460 Brassica carinata HOM05D003691 ORTHO05D004288 4.1e-236 821.6 505 86.1
BcaB06g28606 Brassica carinata HOM05D003691 ORTHO05D004288 4.3e-233 811.6 628 72.8
C04p62100 Brassica napus HOM05D003691 ORTHO05D004288 7.3e-233 810.8 420 98.6
BolC4t27689H Brassica oleracea HOM05D003691 ORTHO05D004288 1.1e-228 797.0 547 78.8
THA.LOC104816038 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 3.5e-227 792.0 627 70.2
BcaC02g07908 Brassica carinata HOM05D003691 ORTHO05D004288 3.9e-226 788.5 560 77.5
THA.LOC104826143 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 4.9e-205 718.4 639 65.4
Atru.chr6.3228 Acer truncatum HOM05D003691 ORTHO05D004288 1.6e-187 660.2 637 59.0
Duzib138G0684 Durio zibethinus HOM05D003691 ORTHO05D004288 4.3e-185 652.1 639 58.8
Manes.04G099700 Manihot esculenta HOM05D003691 ORTHO05D004288 9.6e-185 651.0 632 58.7
Prupe.3G213700 Prunus persica HOM05D003691 ORTHO05D004288 4.8e-184 648.7 665 55.9
Thecc.01G178100 Theobroma cacao HOM05D003691 ORTHO05D004288 2.9e-181 639.4 628 59.1
Gorai.001G094600 Gossypium raimondii HOM05D003691 ORTHO05D004288 6.4e-181 638.3 637 57.8
Gohir.A07G081900 Gossypium hirsutum HOM05D003691 ORTHO05D004288 1.1e-180 637.5 637 57.8
Gohir.D07G088400 Gossypium hirsutum HOM05D003691 ORTHO05D004288 1.1e-180 637.5 627 58.2
MD09G1071300 Malus domestica HOM05D003691 ORTHO05D004288 3.2e-180 636.0 632 58.4
GSVIVG01030475001 Vitis vinifera HOM05D003691 ORTHO05D004288 4.2e-180 635.6 631 59.4
CANSAT64G0165 Cannabis sativa HOM05D003691 ORTHO05D004288 1.3e-178 630.6 630 58.9
FAN14G5114 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.9e-178 629.0 630 57.0
TWI75G0495 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 1.5e-177 627.1 628 57.6
CiPaw.03G157800 Carya illinoinensis HOM05D003691 ORTHO05D004288 1.9e-177 626.7 670 56.3
Duzib211G0477 Durio zibethinus HOM05D003691 ORTHO05D004288 2.5e-177 626.3 668 55.4
Haze_12800 Corylus avellana HOM05D003691 ORTHO05D004288 3.3e-177 625.9 637 59.0
Ciclev10014542m.g Citrus clementina HOM05D003691 ORTHO05D004288 5.6e-177 625.2 640 57.7
FAN05G1959 Fragaria x ananassa HOM05D003691 ORTHO05D004288 5.6e-177 625.2 630 56.5
RcHm_v2.0_Chr2g0158621 Rosa chinensis HOM05D003691 ORTHO05D004288 7.4e-177 624.8 637 57.1
TWI36G1355 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 1.3e-176 624.0 636 56.4
FAN09G0430 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.1e-176 623.2 633 57.2
QL08p031532 Quercus lobata HOM05D003691 ORTHO05D004288 6.2e-176 621.7 634 58.0
FvH4_6g42730 Fragaria vesca HOM05D003691 ORTHO05D004288 8.1e-176 621.3 640 56.1
Sabra14G0117900 Salix brachista HOM05D003691 ORTHO05D004288 3.4e-174 615.9 617 57.9
Potri.014G155900 Populus trichocarpa HOM05D003691 ORTHO05D004288 1.1e-172 610.9 617 56.7
Sed0022442 Sechium edule HOM05D003691 ORTHO05D004288 4.6e-171 605.5 632 55.5
Hma1.2p1_0895F.1_g233770 Hydrangea macrophylla HOM05D003691 ORTHO05D004288 2.1e-168 596.7 627 55.5
Sc12g0002210 Simmondsia chinensis HOM05D003691 ORTHO05D004288 3.7e-168 595.9 643 55.1
FAN02G0990 Fragaria x ananassa HOM05D003691 ORTHO05D004288 4.8e-168 595.5 622 56.8
Lalb_Chr03g0028581 Lupinus albus HOM05D003691 ORTHO05D004288 6.3e-168 595.1 631 54.7
Dinv39731 Davidia involucrata HOM05D003691 ORTHO05D004288 4.1e-167 592.4 636 55.2
PGR042G1566 Punica granatum HOM05D003691 ORTHO05D004288 1.5e-166 590.5 650 54.2
TAR626G1388 Trochodendron aralioides HOM05D003691 ORTHO05D004288 2.0e-166 590.1 611 56.1
CsaV3_2G034670 Cucumis sativus L. HOM05D003691 ORTHO05D004288 7.6e-166 588.2 638 54.9
vmacro09345 Vaccinium macrocarpon HOM05D003691 ORTHO05D004288 1.3e-165 587.4 644 55.0
Dinv08745 Davidia involucrata HOM05D003691 ORTHO05D004288 1.7e-165 587.0 636 55.5
Glyma.12G096700 Glycine max HOM05D003691 ORTHO05D004288 1.7e-165 587.0 626 54.3
TAR624G0007 Trochodendron aralioides HOM05D003691 ORTHO05D004288 3.8e-165 585.9 647 53.3
MELO3C019300.2 Cucumis melo HOM05D003691 ORTHO05D004288 3.2e-164 582.8 636 54.4
Nn1g03443 Nelumbo nucifera HOM05D003691 ORTHO05D004288 5.5e-164 582.0 643 54.7
ClCG02G009060 Citrullus lanatus HOM05D003691 ORTHO05D004288 7.2e-164 581.6 638 54.7
Glyma.06G308100 Glycine max HOM05D003691 ORTHO05D004288 1.6e-163 580.5 628 54.8
Cpa.g.sc87.104 Carica papaya HOM05D003691 ORTHO05D004288 3.9e-162 575.9 511 63.2
arahy.Tifrunner.gnm1.ann1.AS5DTW Arachis hypogaea HOM05D003691 ORTHO05D004288 6.7e-162 575.1 637 54.9
arahy.Tifrunner.gnm1.ann1.4D79G7 Arachis hypogaea HOM05D003691 ORTHO05D004288 1.1e-161 574.3 637 54.8
Migut.M00432 Erythranthe guttata HOM05D003691 ORTHO05D004288 1.5e-161 573.9 635 54.5
Medtr4g050060 Medicago truncatula HOM05D003691 ORTHO05D004288 2.5e-161 573.2 631 54.7
PSO210G5093 Papaver somniferum HOM05D003691 ORTHO05D004288 3.3e-161 572.8 648 53.4
Eucgr.A01107 Eucalyptus grandis HOM05D003691 ORTHO05D004288 7.4e-161 571.6 620 54.4
DCAR_019753 Daucus carota HOM05D003691 ORTHO05D004288 9.7e-161 571.2 632 53.8
Sopen07g025100 Solanum pennellii HOM05D003691 ORTHO05D004288 4.8e-160 568.9 631 55.0
MBI07_g01730_MAGBIO Magnolia biondii HOM05D003691 ORTHO05D004288 1.1e-159 567.8 640 54.8
Rhsim04G0052200 Rhododendron simsii HOM05D003691 ORTHO05D004288 1.8e-159 567.0 648 54.3
Solyc07g049680.4 Solanum lycopersicum HOM05D003691 ORTHO05D004288 2.4e-159 566.6 631 54.7
Lj3g0007999 Lotus japonicus HOM05D003691 ORTHO05D004288 6.9e-159 565.1 642 53.7
MSTRG.14857 Avicennia marina HOM05D003691 ORTHO05D004288 9.0e-159 564.7 637 52.9
SGA_v2.0_scaffold70G23393 Striga asiatica HOM05D003691 ORTHO05D004288 1.5e-158 563.9 643 53.8
QL08p006881 Quercus lobata HOM05D003691 ORTHO05D004288 2.0e-158 563.5 653 52.2
PGSC0003DMG400001077 Solanum tuberosum HOM05D003691 ORTHO05D004288 1.3e-157 560.8 631 54.7
LjContig00274_ERROPOS1100000g0006521 Lotus japonicus HOM05D003691 ORTHO05D004288 2.2e-157 560.1 607 54.2
Nitab4.5_0000130g0240 Nicotiana tabacum HOM05D003691 ORTHO05D004288 2.9e-157 559.7 631 53.9
Phvul.011G101300 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 6.5e-157 558.5 627 53.3
TPR.G4630 Trifolium pratense HOM05D003691 ORTHO05D004288 6.5e-157 558.5 639 52.4
Cc05_g03670 Coffea canephora HOM05D003691 ORTHO05D004288 9.4e-156 554.7 672 52.2
Oeu027232.1 Olea europaea HOM05D003691 ORTHO05D004288 1.2e-155 554.3 649 52.2
DCAR_021155 Daucus carota HOM05D003691 ORTHO05D004288 1.6e-155 553.9 628 52.7
Psat7g203760 Pisum sativum HOM05D003691 ORTHO05D004288 2.1e-155 553.5 631 52.8
CAN.G290.10 Capsicum annuum HOM05D003691 ORTHO05D004288 6.1e-155 552.0 627 53.1
Nitab4.5_0015742g0010 Nicotiana tabacum HOM05D003691 ORTHO05D004288 8.8e-154 548.1 633 53.1
TPR.G4243 Trifolium pratense HOM05D003691 ORTHO05D004288 1.1e-151 541.2 653 51.3
HanXRQChr04g0126971 Helianthus annuus HOM05D003691 ORTHO05D004288 1.4e-151 540.8 663 51.1
VMungo1127G0496 Vigna mungo HOM05D003691 ORTHO05D004288 1.4e-151 540.8 628 52.7
Phvul.005G116900 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 2.4e-151 540.0 634 51.6
VMungo1080G0849 Vigna mungo HOM05D003691 ORTHO05D004288 2.0e-150 537.0 633 51.5
Ca_19493_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 3.4e-150 536.2 631 50.4
ECA240G1119 Erigeron canadensis HOM05D003691 ORTHO05D004288 1.0e-149 534.6 641 50.7
Glyma.12G191300 Glycine max HOM05D003691 ORTHO05D004288 1.3e-149 534.3 635 50.6
Lsat_1_v5_gn_7_93200 Lactuca sativa HOM05D003691 ORTHO05D004288 1.3e-149 534.3 637 50.9
Aqoxy1G03453 Aquilegia oxysepala HOM05D003691 ORTHO05D004288 8.5e-149 531.6 625 51.7
SalBow7G1078 Salvia bowleyana HOM05D003691 ORTHO05D004288 1.4e-148 530.8 654 50.8
AUR62015833 Chenopodium quinoa HOM05D003691 ORTHO05D004288 1.9e-148 530.4 664 50.3
ECA236G1051 Erigeron canadensis HOM05D003691 ORTHO05D004288 2.5e-148 530.0 640 51.9
Medtr2g087880 Medicago truncatula HOM05D003691 ORTHO05D004288 9.4e-148 528.1 632 50.6
Lj8A127T48 Lonicera japonica HOM05D003691 ORTHO05D004288 2.1e-147 526.9 545 56.1
Hund02023 Selenicereus undatus HOM05D003691 ORTHO05D004288 2.1e-147 526.9 678 50.7
EL10Ac4g07751 Beta vulgaris HOM05D003691 ORTHO05D004288 2.7e-147 526.6 650 50.2
Cfa020301 Carpinus fangiana HOM05D003691 ORTHO05D004288 1.5e-145 520.8 652 49.2
Psat5g261240 Pisum sativum HOM05D003691 ORTHO05D004288 4.4e-145 519.2 630 50.2
Prupe.4G220400 Prunus persica HOM05D003691 ORTHO05D004288 8.2e-144 515.0 657 49.9
Atru.chr2.3500 Acer truncatum HOM05D003691 ORTHO05D004288 1.3e-141 507.7 660 49.1
Ah.06g182530 Amaranthus hybridus HOM05D003691 ORTHO05D004288 2.2e-141 506.9 694 47.8
Thecc.07G031000 Theobroma cacao HOM05D003691 ORTHO05D004288 1.9e-140 503.8 653 49.0
Peaxi162Scf00007g00129 Petunia axillaris HOM05D003691 ORTHO05D004288 2.5e-140 503.4 578 53.3
Ca_01616_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 4.2e-140 502.7 668 48.7
Ciclev10007620m.g Citrus clementina HOM05D003691 ORTHO05D004288 1.2e-139 501.1 679 47.7
HPP92_023149 Vanilla planifolia HOM05D003691 ORTHO05D004288 1.1e-135 488.0 633 47.4
ATR0317G123 Amborella trichopoda HOM05D003691 ORTHO05D004288 2.4e-135 486.9 611 51.4
CiPaw.11G193000 Carya illinoinensis HOM05D003691 ORTHO05D004288 1.2e-134 484.6 511 54.0
Lsat_1_v5_gn_9_106740 Lactuca sativa HOM05D003691 ORTHO05D004288 6.5e-133 478.8 620 47.7
Haze_09719 Corylus avellana HOM05D003691 ORTHO05D004288 4.2e-132 476.1 708 43.8
Zm00001eb162990 Zea mays HOM05D003691 ORTHO05D004288 8.0e-131 471.9 616 48.7
FvH4_3g23280 Fragaria vesca HOM05D003691 ORTHO05D004288 4.8e-128 462.6 640 46.1
MD11G1212100 Malus domestica HOM05D003691 ORTHO05D004288 4.1e-127 459.5 625 46.7
RcHm_v2.0_Chr5g0041001 Rosa chinensis HOM05D003691 ORTHO05D004288 4.1e-127 459.5 668 45.2
FAN21G2044 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.9e-124 450.7 615 47.0
COL.COLO4_09704 Corchorus olitorius HOM05D003691 ORTHO05D004288 2.3e-122 443.7 504 53.4
Gohir.A07G186000 Gossypium hirsutum HOM05D003691 ORTHO05D004288 3.3e-116 423.3 440 55.0
Hund02022 Selenicereus undatus HOM05D003691 ORTHO05D004288 1.6e-115 421.0 688 42.0
AUR62020387 Chenopodium quinoa HOM05D003691 ORTHO05D004288 2.3e-114 417.2 660 44.1
CSS0013476 Camellia sinensis var. sinensis HOM05D003691 ORTHO05D004288 8.9e-114 415.2 468 54.1
Dinv22243 Davidia involucrata HOM05D003691 ORTHO05D004288 1.2e-113 414.8 555 47.9
GSVIVG01037701001 Vitis vinifera HOM05D003691 ORTHO05D004288 1.4e-111 407.9 630 45.4
FAN11G2344 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.2e-111 406.8 573 45.2
Hund02025 Selenicereus undatus HOM05D003691 ORTHO05D004288 4.6e-110 402.9 688 41.6
Actinidia10811 Actinidia chinensis HOM05D003691 ORTHO05D004288 8.9e-106 388.7 428 56.5
unitig_60.g25819 Utricularia gibba HOM05D003691 ORTHO05D004288 2.4e-103 380.6 607 43.7
SEGI_30766 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 2.3e-101 374.0 568 43.7
Lj8A171G44 Lonicera japonica HOM05D003691 ORTHO05D004288 2.5e-100 370.5 496 46.8
SEGI_37895 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 6.4e-96 355.9 579 42.8
AUR62020385 Chenopodium quinoa HOM05D003691 ORTHO05D004288 1.3e-93 348.2 351 57.3
Lalb_Chr19g0136071 Lupinus albus HOM05D003691 ORTHO05D004288 1.5e-92 344.7 377 53.1
Pp3c11_22430 Physcomitrium patens HOM05D003691 ORTHO05D004288 3.4e-89 333.6 638 36.8
AUR62015832 Chenopodium quinoa HOM05D003691 ORTHO05D004288 3.8e-88 330.1 581 39.1
Oeu036739.1 Olea europaea HOM05D003691 ORTHO05D004288 4.3e-84 316.6 260 68.5
Mapoly0002s0133 Marchantia polymorpha HOM05D003691 ORTHO05D004288 6.2e-83 312.8 648 36.1
AagrBONN_evm.TU.Sc2ySwM_228.2537 Anthoceros agrestis HOM05D003691 ORTHO05D004288 1.4e-79 301.6 622 36.5
FAN25G2100 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.1e-78 297.7 291 59.5
MD03G1195700 Malus domestica HOM05D003691 ORTHO05D004288 9.3e-71 272.3 426 42.3
CBR_g26183 Chara braunii HOM05D003691 ORTHO05D004288 6.4e-64 249.6 757 30.4
MD17G1101300 Malus domestica HOM05D003691 ORTHO05D004288 5.1e-61 240.0 260 53.8
Pp3c7_4280 Physcomitrium patens HOM05D003691 ORTHO05D004288 8.7e-61 239.2 642 32.6
Lalb_Chr19g0136061 Lupinus albus HOM05D003691 ORTHO05D004288 1.5e-52 211.8 239 51.0
PRCOL_00002032 Prasinoderma coloniale HOM05D003691 ORTHO05D004288 2.5e-52 211.1 538 30.7
C04p62090 Brassica napus HOM05D003691 ORTHO05D004288 2.0e-49 201.4 131 80.9
MCO04G245 Micromonas commoda HOM05D003691 ORTHO05D004288 3.9e-45 187.2 592 29.7
Os01g0532800 Oryza sativa ssp. japonica HOM05D003691 ORTHO05D004288 9.7e-44 182.6 241 43.6
CDE09G1127 Ceratophyllum demersum HOM05D003691 ORTHO05D004288 7.7e-41 172.9 223 51.1
SHI10368 Sapria himalayana HOM05D003691 ORTHO05D004288 4.4e-36 157.1 367 36.2
Sed0010458 Sechium edule HOM05D003691 ORTHO05D004288 2.2e-35 154.8 249 41.0
FAN25G2879 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.1e-34 152.5 308 36.4
Cfa026695 Carpinus fangiana HOM05D003691 ORTHO05D004288 1.3e-27 129.0 728 25.8
MD03G1195600 Malus domestica HOM05D003691 ORTHO05D004288 2.8e-27 127.9 164 47.6
Actinidia10812 Actinidia chinensis HOM05D003691 ORTHO05D004288 1.1e-23 115.9 167 45.5
arahy.Tifrunner.gnm1.ann1.NAA2I0 Arachis hypogaea HOM05D003691 ORTHO05D004288 1.7e-19 102.1 61 82.0
CAN.G574.39 Capsicum annuum HOM05D003691 ORTHO05D004288 4.8e-19 100.5 86 61.6
CAN.G574.40 Capsicum annuum HOM05D003691 ORTHO05D004288 2.5e-15 88.2 68 66.2
SHI10371 Sapria himalayana HOM05D003691 ORTHO05D004288 8.8e-13 79.7 90 51.1
Rhsim07G0255900 Rhododendron simsii HOM05D000234 ORTHO05D004288 9.8e-12 76.3 121 38.8
SHI10370 Sapria himalayana HOM05D000105 ORTHO05D000023 5.4e-10 70.5 40 82.5
TPR.G35222 Trifolium pratense HOM05D003691 ORTHO05D004288 5.4e-10 70.5 126 35.7
Lj8A171G43 Lonicera japonica HOM05D003691 ORTHO05D004288 7.7e-09 66.6 104 42.3
Lj8A127T49 Lonicera japonica HOM05D003691 ORTHO05D004288 1.0e-08 66.2 83 51.8
Actinidia03601 Actinidia chinensis HOM05D003691 ORTHO05D004288 3.8e-08 64.3 52 65.4
ATR0772G025 Amborella trichopoda HOM05D003691 ORTHO05D004288 4.2e-07 60.8 106 34.0
MD17G1101200 Malus domestica HOM05D003691 ORTHO05D004288 7.2e-07 60.1 54 46.3
MD17G1101000 Malus domestica HOM05D003691 ORTHO05D004288 1.6e-06 58.9 46 60.9
FAN16G1928 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.6e-06 57.8 76 43.4
SEGI_15855 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 3.6e-06 57.8 75 46.7


User provided reference genes

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