Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 1.2e-294 1015.8 503 100.0
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 7.2e-268 926.8 495 92.9
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 7.2e-268 926.8 495 92.9
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 8.8e-266 919.8 499 91.2
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 2.3e-258 895.2 499 88.4
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 6.7e-258 893.6 492 90.4
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 3.1e-255 884.8 557 81.9
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 2.0e-246 855.5 504 83.7
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.2e-243 846.3 509 83.3
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 8.8e-242 840.1 505 82.8
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 7.7e-230 800.4 500 79.8
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 1.5e-212 743.0 475 78.1
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 4.0e-210 734.9 479 76.0
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 4.0e-202 708.4 397 86.4
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 6.9e-194 681.0 463 75.2
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 2.1e-190 669.5 480 69.6
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 4.6e-190 668.3 479 69.3
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 6.0e-190 667.9 477 69.6
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 1.3e-187 660.2 497 69.0
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 2.4e-186 656.0 482 68.0
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 9.0e-186 654.1 477 69.2
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 2.0e-185 652.9 481 69.2
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 5.8e-185 651.4 483 68.3
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 8.4e-184 647.5 479 68.1
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 1.4e-183 646.7 485 67.6
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 5.4e-183 644.8 513 66.9
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 1.2e-182 643.7 491 68.8
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 2.7e-182 642.5 475 68.8
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 4.6e-182 641.7 476 68.5
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 7.9e-182 641.0 492 67.1
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 1.3e-181 640.2 494 66.8
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 2.3e-181 639.4 471 68.4
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 8.7e-181 637.5 487 67.6
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 3.3e-180 635.6 493 67.1
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 3.3e-180 635.6 476 68.5
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 9.6e-180 634.0 480 68.1
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 2.8e-179 632.5 495 67.7
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 8.1e-179 630.9 477 67.7
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 1.1e-178 630.6 483 67.3
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 1.4e-178 630.2 478 66.9
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 1.8e-178 629.8 478 67.6
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 4.0e-178 628.6 467 68.3
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 9.0e-178 627.5 497 65.6
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 3.4e-177 625.5 476 66.8
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 4.5e-177 625.2 473 68.1
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 1.3e-176 623.6 484 67.4
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 1.3e-176 623.6 477 67.7
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 2.9e-176 622.5 472 66.1
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 3.8e-176 622.1 487 65.1
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 3.8e-176 622.1 481 65.5
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 6.4e-176 621.3 483 65.8
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 9.3e-175 617.5 512 64.3
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 1.6e-174 616.7 480 66.2
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 2.1e-174 616.3 473 67.2
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 1.8e-173 613.2 462 66.7
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 6.7e-173 611.3 485 66.2
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 6.7e-173 611.3 462 66.7
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 5.6e-172 608.2 474 66.7
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 4.0e-170 602.1 484 64.9
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 1.1e-167 594.0 457 66.7
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 1.4e-167 593.6 499 64.1
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 2.5e-167 592.8 497 63.8
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 4.2e-167 592.0 473 63.8
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 1.2e-166 590.5 458 65.7
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 3.5e-166 589.0 472 64.6
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 4.6e-166 588.6 468 63.9
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 3.0e-165 585.9 475 62.9
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 6.7e-165 584.7 493 61.9
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 5.7e-164 581.6 465 63.9
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 1.8e-162 576.6 446 66.8
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 2.4e-162 576.2 483 61.9
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 6.9e-162 574.7 467 63.2
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 1.0e-160 570.9 482 62.2
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 3.8e-160 568.9 479 63.7
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 9.3e-159 564.3 477 61.8
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 1.6e-158 563.5 462 64.3
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 2.0e-153 546.6 470 62.6
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 7.7e-153 544.7 484 59.3
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 1.0e-152 544.3 467 60.6
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 1.7e-152 543.5 466 60.9
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 1.7e-152 543.5 451 62.1
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 8.5e-152 541.2 481 60.7
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 1.2e-150 537.3 481 60.1
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 4.4e-148 528.9 492 57.7
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 2.2e-147 526.6 549 53.4
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 1.8e-146 523.5 470 58.5
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 4.1e-146 522.3 486 59.3
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 5.3e-146 521.9 410 65.6
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 4.5e-145 518.8 474 59.3
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 5.5e-143 511.9 490 59.2
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 1.5e-140 503.8 517 54.7
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 2.2e-139 500.0 469 57.8
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 1.1e-138 497.7 506 53.4
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 1.4e-138 497.3 368 68.2
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 2.4e-138 496.5 385 65.2
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 3.2e-135 486.1 379 66.5
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 4.0e-133 479.2 273 83.2
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 8.2e-131 471.5 474 56.8
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 1.1e-130 471.1 451 55.0
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 7.7e-129 464.9 452 56.9
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 8.5e-128 461.5 465 54.6
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 1.2e-124 451.1 509 49.7
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 8.3e-123 444.9 541 46.0
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.1e-118 430.3 449 53.2
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 5.2e-117 425.6 263 77.2
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 3.4e-116 422.9 846 35.1
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 4.9e-115 419.1 514 50.8
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 1.4e-114 417.5 408 56.4
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 1.0e-104 384.8 330 59.7
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 4.3e-103 379.4 464 47.0
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 2.5e-95 353.6 382 54.5
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 9.5e-95 351.7 472 45.6
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-92 343.2 624 36.5
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 7.1e-90 335.5 227 68.3
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 2.3e-88 330.5 428 48.6
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 6.8e-85 318.9 193 78.2
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 2.4e-82 310.5 456 39.0
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 2.7e-81 307.0 323 52.6
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 2.3e-72 277.3 265 51.3
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 3.0e-64 250.4 294 44.2
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 1.1e-58 231.9 132 82.6
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 2.7e-57 227.3 303 41.9
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 3.5e-57 226.9 125 84.0
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 1.8e-53 214.5 284 40.1
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 1.6e-49 201.4 388 36.9
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 1.6e-49 201.4 114 83.3
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.0e-48 198.7 109 87.2
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 8.8e-32 142.5 87 79.3
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 2.2e-22 111.3 76 71.1
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 2.2e-22 111.3 56 85.7
CARHR125940 Cardamine hirsuta HOM05D005440 ORTHO05D034043 4.8e-22 110.2 156 42.9
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 7.7e-20 102.8 82 61.0
SEGI_40090 Sequoiadendron giganteum HOM05D005440 ORTHO05D034043 1.2e-12 79.0 63 60.3
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 2.7e-12 77.8 41 82.9
Dinv02985 Davidia involucrata HOM05D005440 ORTHO05D034043 3.2e-10 70.9 64 59.4
CAN.G93.4 Capsicum annuum HOM05D000541 ORTHO05D000137 3.6e-09 67.4 90 43.3
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 8.8e-08 62.8 47 66.0
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 8.8e-08 62.8 66 54.5
CAN.G1245.16 Capsicum annuum HOM05D001673 ORTHO05D022156 2.0e-07 61.6 43 72.1


User provided reference genes

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