Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28543 Brassica carinata HOM05D012749 ORTHO05D000594 1.9e-124 449.1 218 100.0
BcaC02g07986 Brassica carinata HOM05D012749 ORTHO05D024259 1.7e-64 250.0 186 71.5
C04p61070 Brassica napus HOM05D012749 ORTHO05D024259 1.7e-64 250.0 186 71.5
BolC4t27591H Brassica oleracea HOM05D012749 ORTHO05D024259 1.7e-64 250.0 186 71.5
A04p24250 Brassica napus HOM05D012749 ORTHO05D024259 2.4e-63 246.1 181 68.5
BraA04t17944Z Brassica rapa HOM05D012749 ORTHO05D024259 2.4e-63 246.1 181 68.5
C04p60990 Brassica napus HOM05D012749 ORTHO05D039536 1.8e-58 229.9 192 62.0
BcaC02g07991 Brassica carinata HOM05D012749 ORTHO05D039536 4.0e-58 228.8 192 62.0
AT2G31420 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 6.7e-13 78.6 149 34.2
AT2G31460 Arabidopsis thaliana HOM05D012749 ORTHO05D000594 3.3e-12 76.3 135 34.8
Aa31LG5G5490 Aethionema arabicum HOM05D000896 ORTHO05D000594 4.4e-12 75.9 164 30.5
Aa31sc1610G20 Aethionema arabicum HOM05D000896 ORTHO05D000594 4.4e-12 75.9 164 30.5
A04p23930 Brassica napus HOM05D016978 ORTHO05D018741 9.7e-12 74.7 151 33.1
A04p23950 Brassica napus HOM05D016978 ORTHO05D018741 9.7e-12 74.7 151 33.1
BraA04t17917Z Brassica rapa HOM05D016978 ORTHO05D018741 9.7e-12 74.7 151 33.1
BraA04t17919Z Brassica rapa HOM05D016978 ORTHO05D018741 9.7e-12 74.7 151 33.1
BcaB06g28422 Brassica carinata HOM05D016978 ORTHO05D018741 1.7e-11 73.9 166 29.5
Carub.0004s1432 Capsella rubella HOM05D000896 ORTHO05D000594 2.4e-10 70.1 173 33.5
Carub.0004s1399 Capsella rubella HOM05D000896 ORTHO05D000594 3.1e-10 69.7 170 32.9
AL4G28060 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 7.0e-10 68.6 170 32.9
AL4G27540 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 9.1e-10 68.2 157 33.1
BcaB01g01586 Brassica carinata HOM05D000896 ORTHO05D000594 2.0e-09 67.0 175 32.0
AT2G27410 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 2.7e-09 66.6 147 36.1
CsaV3_5G028440 Cucumis sativus L. HOM05D000896 ORTHO05D000594 5.9e-09 65.5 126 34.1
Medtr5g007910 Medicago truncatula HOM05D000896 ORTHO05D000594 7.7e-09 65.1 160 31.2
Thhalv10012233m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 1.7e-08 63.9 136 33.1
Manes.14G006500 Manihot esculenta HOM05D000896 ORTHO05D000594 1.7e-08 63.9 176 31.2
BcaB06g28546 Brassica carinata HOM05D000896 ORTHO05D000594 2.2e-08 63.5 135 32.6
MELO3C005283.2 Cucumis melo HOM05D000896 ORTHO05D000594 2.9e-08 63.2 127 34.6
MELO3C005306.2 Cucumis melo HOM05D000896 ORTHO05D000594 2.9e-08 63.2 126 32.5
CsaV3_5G027980 Cucumis sativus L. HOM05D000896 ORTHO05D000594 1.5e-07 60.8 126 31.7
BraA04t17932Z Brassica rapa HOM05D000896 ORTHO05D000594 1.9e-07 60.5 194 28.9
A04p23440 Brassica napus HOM05D000896 ORTHO05D000594 5.5e-07 58.9 163 31.9
CsaV3_5G028220 Cucumis sativus L. HOM05D000896 ORTHO05D000594 5.5e-07 58.9 125 31.2
TPR.G17212 Trifolium pratense HOM05D000896 ORTHO05D000594 7.2e-07 58.5 154 33.1
ClCG01G006230 Citrullus lanatus HOM05D000896 ORTHO05D000594 9.4e-07 58.2 126 30.2
ClCG01G006250 Citrullus lanatus HOM05D000896 ORTHO05D000594 9.4e-07 58.2 168 27.4
Lalb_Chr09g0329091 Lupinus albus HOM05D000896 ORTHO05D000594 9.4e-07 58.2 127 33.9
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 1.2e-06 57.8 114 33.3
A04p24120 Brassica napus HOM05D000896 ORTHO05D000594 1.6e-06 57.4 194 28.4
ClCG08G015080 Citrullus lanatus HOM05D000896 ORTHO05D000594 1.6e-06 57.4 191 28.3
Lj4g0007022 Lotus japonicus HOM05D000896 ORTHO05D000594 1.6e-06 57.4 131 27.5
BraA04t17871Z Brassica rapa HOM05D000896 ORTHO05D000594 2.1e-06 57.0 158 32.3
A09p28140 Brassica napus HOM05D000896 ORTHO05D000594 2.7e-06 56.6 72 37.5
Psat4g124560 Pisum sativum HOM05D000896 ORTHO05D000594 3.6e-06 56.2 189 28.6
Sed0008121 Sechium edule HOM05D000896 ORTHO05D000594 3.6e-06 56.2 126 29.4
Sc22g0001910 Simmondsia chinensis HOM05D000896 ORTHO05D000594 6.1e-06 55.5 161 26.7


User provided reference genes

Program Settings