Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28538 Brassica carinata HOM05D008213 ORTHO05D009787 3.2e-224 781.6 429 100.0
C04p60980 Brassica napus HOM05D008213 ORTHO05D009787 1.2e-178 630.2 472 79.2
BraA04t17943Z Brassica rapa HOM05D008213 ORTHO05D009787 3.3e-173 612.1 463 77.8
A04p24240 Brassica napus HOM05D008213 ORTHO05D009787 9.7e-173 610.5 463 77.3
Thhalv10017539m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 8.0e-159 564.3 487 70.0
BcaC02g07992 Brassica carinata HOM05D008213 ORTHO05D009787 1.2e-157 560.5 414 79.5
Sp4g13940 Schrenkiella parvula HOM05D008213 ORTHO05D009787 4.8e-156 555.1 498 68.9
Carub.0004s1279 Capsella rubella HOM05D008213 ORTHO05D009787 3.4e-149 532.3 482 66.8
AT2G31480 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 1.7e-148 530.0 485 67.2
CARHR125120 Cardamine hirsuta HOM05D008213 ORTHO05D009787 4.1e-147 525.4 459 68.4
AL4G26740 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 1.6e-146 523.5 499 64.3
BcaB02g10393 Brassica carinata HOM05D008213 ORTHO05D009787 5.6e-128 461.8 437 63.6
BcaC02g11257 Brassica carinata HOM05D008213 ORTHO05D009787 3.1e-126 456.1 438 64.2
A05p14130 Brassica napus HOM05D008213 ORTHO05D009787 8.9e-126 454.5 476 60.5
BraA05t20342Z Brassica rapa HOM05D008213 ORTHO05D009787 8.9e-126 454.5 476 60.5
BcaC02g11256 Brassica carinata HOM05D008213 ORTHO05D009787 5.8e-125 451.8 477 61.2
BolC4t23398H Brassica oleracea HOM05D008213 ORTHO05D009787 5.8e-125 451.8 477 61.2
C04p18480 Brassica napus HOM05D008213 ORTHO05D009787 9.8e-125 451.1 478 61.5
BcaB02g10392 Brassica carinata HOM05D008213 ORTHO05D009787 1.2e-117 427.6 472 61.4
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 6.4e-116 421.8 458 60.5
Sp1g04730 Schrenkiella parvula HOM05D008213 ORTHO05D009787 1.3e-103 380.9 475 53.9
Carub.0001s0526 Capsella rubella HOM05D008213 ORTHO05D009787 6.9e-102 375.2 474 53.8
CARHR005430 Cardamine hirsuta HOM05D008213 ORTHO05D009787 1.5e-101 374.0 461 55.7
Aa31LG1G8440 Aethionema arabicum HOM05D008213 ORTHO05D009787 4.6e-98 362.5 477 52.0
AL1G15840 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 6.0e-98 362.1 478 53.3
BraA08t35527Z Brassica rapa HOM05D008213 ORTHO05D009787 1.7e-97 360.5 449 55.0
C08p02290 Brassica napus HOM05D008213 ORTHO05D009787 3.0e-97 359.8 444 54.5
A08p36230 Brassica napus HOM05D008213 ORTHO05D009787 2.5e-96 356.7 449 55.0
BolC8t47021H Brassica oleracea HOM05D008213 ORTHO05D009787 3.3e-96 356.3 444 54.3
AT1G05894 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 9.6e-96 354.8 478 52.9
Thhalv10009329m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 1.1e-94 351.3 483 51.3
THA.LOC104826192 Tarenaya hassleriana HOM05D008213 ORTHO05D009787 4.0e-94 349.4 503 49.5
BcaC07g36821 Brassica carinata HOM05D008213 ORTHO05D009787 5.4e-91 339.0 440 51.6
Thecc.04G185000 Theobroma cacao HOM05D008213 ORTHO05D009787 1.0e-25 122.1 533 28.0
Dinv44200 Davidia involucrata HOM05D008213 ORTHO05D009787 5.2e-25 119.8 204 38.2
Manes.11G119400 Manihot esculenta HOM05D008213 ORTHO05D009787 5.4e-22 109.8 407 27.8
Duzib151G0756 Durio zibethinus HOM05D008213 ORTHO05D009787 2.5e-19 100.9 263 31.2
QL10p048331 Quercus lobata HOM05D008213 ORTHO05D009787 9.5e-19 99.0 502 25.3
PGR142G1601 Punica granatum HOM05D008213 ORTHO05D009787 4.7e-18 96.7 446 27.6
Hma1.2p1_0754F.1_g213080 Hydrangea macrophylla HOM05D008213 ORTHO05D009787 5.2e-17 93.2 249 37.3
TAR362G1061 Trochodendron aralioides HOM05D008213 ORTHO05D009787 5.2e-17 93.2 201 35.3
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 8.9e-17 92.4 356 28.7
Gohir.D02G016500 Gossypium hirsutum HOM05D008213 ORTHO05D009787 1.2e-16 92.0 356 28.9
Prupe.1G190600 Prunus persica HOM05D008213 ORTHO05D009787 1.5e-16 91.7 435 25.3
Gorai.005G020000 Gossypium raimondii HOM05D008213 ORTHO05D009787 9.8e-16 89.0 199 33.7
Cpa.g.sc71.7 Carica papaya HOM05D008213 ORTHO05D009787 2.9e-15 87.4 400 26.5
RcHm_v2.0_Chr4g0407081 Rosa chinensis HOM05D008213 ORTHO05D009787 8.3e-15 85.9 419 28.6
Sabra07G0103200 Salix brachista HOM05D008213 ORTHO05D009787 5.0e-12 76.6 316 29.1
Ciclev10023340m.g Citrus clementina HOM05D008213 ORTHO05D009787 4.3e-11 73.6 328 27.4
Potri.007G127200 Populus trichocarpa HOM05D008213 ORTHO05D009787 4.3e-11 73.6 469 24.7
COL.COLO4_24404 Corchorus olitorius HOM05D008213 ORTHO05D009787 1.2e-10 72.0 215 32.6
DCAR_017617 Daucus carota HOM05D008213 ORTHO05D009787 4.7e-10 70.1 199 30.2
Aqoxy5G00188 Aquilegia oxysepala HOM05D008213 ORTHO05D009787 1.8e-09 68.2 197 28.4
CiPaw.01G101800 Carya illinoinensis HOM05D008213 ORTHO05D009787 1.8e-09 68.2 456 25.0
Atru.chr3.1539 Acer truncatum HOM05D008213 ORTHO05D009787 5.2e-09 66.6 96 44.8
ECA233G5141 Erigeron canadensis HOM05D008213 ORTHO05D009787 1.3e-07 62.0 254 25.2
GSVIVG01010744001 Vitis vinifera HOM05D008213 ORTHO05D009787 1.7e-07 61.6 431 25.8


User provided reference genes

Program Settings