Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G26750 Arabidopsis lyrata HOM05D005730 ORTHO05D007038 2.2e-34 148.3 68 100.0
AT2G31490 Arabidopsis thaliana HOM05D005730 ORTHO05D007038 2.2e-34 148.3 68 100.0
BcaB06g28537 Brassica carinata HOM05D005730 ORTHO05D007038 2.2e-34 148.3 68 100.0
BcaC02g07993 Brassica carinata HOM05D005730 ORTHO05D007038 2.2e-34 148.3 68 100.0
A03p17640 Brassica napus HOM05D005730 ORTHO05D007038 2.2e-34 148.3 68 100.0
A04p24230 Brassica napus HOM05D005730 ORTHO05D007038 2.2e-34 148.3 68 100.0
C03p20730 Brassica napus HOM05D005730 ORTHO05D007038 2.2e-34 148.3 68 100.0
BolC3t14450H Brassica oleracea HOM05D005730 ORTHO05D007038 2.2e-34 148.3 68 100.0
BolC4t23397H Brassica oleracea HOM05D005730 ORTHO05D007038 2.2e-34 148.3 68 100.0
BolC4t27587H Brassica oleracea HOM05D005730 ORTHO05D007038 2.2e-34 148.3 68 100.0
BraA03t11029Z Brassica rapa HOM05D005730 ORTHO05D007038 2.2e-34 148.3 68 100.0
Carub.0004s1281 Capsella rubella HOM05D005730 ORTHO05D007038 2.2e-34 148.3 68 100.0
CARHR125130 Cardamine hirsuta HOM05D005730 ORTHO05D007038 2.2e-34 148.3 68 100.0
BcaB01g04043 Brassica carinata HOM05D005730 ORTHO05D007038 3.7e-34 147.5 68 98.5
BcaB02g10394 Brassica carinata HOM05D005730 ORTHO05D007038 3.7e-34 147.5 68 98.5
Thhalv10017500m.g Eutrema salsugineum HOM05D005730 ORTHO05D007038 3.7e-34 147.5 68 98.5
Sp4g13950 Schrenkiella parvula HOM05D005730 ORTHO05D007038 3.7e-34 147.5 68 98.5
Prupe.1G065800 Prunus persica HOM05D005730 ORTHO05D007038 1.0e-31 139.4 68 89.7
Aa31LG5G7440 Aethionema arabicum HOM05D005730 ORTHO05D007038 1.3e-31 139.0 68 91.2
Cfa020734 Carpinus fangiana HOM05D005730 ORTHO05D007038 2.9e-31 137.9 68 88.2
Atru.chr10.916 Acer truncatum HOM05D005730 ORTHO05D007038 3.8e-31 137.5 68 89.7
Atru.chr10.931 Acer truncatum HOM05D005730 ORTHO05D007038 3.8e-31 137.5 68 89.7
CSS0014288 Camellia sinensis var. sinensis HOM05D005730 ORTHO05D007038 3.8e-31 137.5 68 88.2
Ah.10g033660 Amaranthus hybridus HOM05D005730 ORTHO05D007038 5.0e-31 137.1 68 86.8
Aqoxy7G02690 Aquilegia oxysepala HOM05D005730 ORTHO05D007038 5.0e-31 137.1 68 88.2
MD16G1239700 Malus domestica HOM05D005730 ORTHO05D007038 5.0e-31 137.1 68 86.8
MD13G1234900 Malus domestica HOM05D005730 ORTHO05D007038 8.5e-31 136.3 68 88.2
THA.LOC104815318 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 8.5e-31 136.3 68 88.2
THA.LOC109116496 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 8.5e-31 136.3 68 88.2
THA.LOC109117265 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 8.5e-31 136.3 68 88.2
Gohir.D03G138800 Gossypium hirsutum HOM05D005730 ORTHO05D007038 1.4e-30 135.6 68 85.3
Gorai.003G145600 Gossypium raimondii HOM05D005730 ORTHO05D007038 1.4e-30 135.6 68 85.3
TAR383G0493 Trochodendron aralioides HOM05D005730 ORTHO05D007038 1.9e-30 135.2 68 86.8
Thecc.06G194900 Theobroma cacao HOM05D005730 ORTHO05D007038 2.5e-30 134.8 68 83.8
FvH4_4g06270 Fragaria vesca HOM05D005730 ORTHO05D007038 3.2e-30 134.4 68 82.4
FAN12G2290 Fragaria x ananassa HOM05D005730 ORTHO05D007038 3.2e-30 134.4 68 82.4
RcHm_v2.0_Chr4g0397991 Rosa chinensis HOM05D005730 ORTHO05D007038 3.2e-30 134.4 68 82.4
Manes.11G087000 Manihot esculenta HOM05D005730 ORTHO05D007038 7.2e-30 133.3 68 85.3
Phvul.004G177400 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 1.2e-29 132.5 68 82.4
QL11p009271 Quercus lobata HOM05D005730 ORTHO05D007038 1.6e-29 132.1 67 85.1
CiPaw.16G103100 Carya illinoinensis HOM05D005730 ORTHO05D007038 2.1e-29 131.7 68 85.3
Ciclev10010105m.g Citrus clementina HOM05D005730 ORTHO05D007038 2.1e-29 131.7 68 80.9
Eucgr.D02622 Eucalyptus grandis HOM05D005730 ORTHO05D007038 2.1e-29 131.7 68 82.4
Cc00_g00480 Coffea canephora HOM05D005730 ORTHO05D007038 2.7e-29 131.3 68 79.4
Gohir.A03G029700 Gossypium hirsutum HOM05D005730 ORTHO05D007038 3.6e-29 131.0 68 82.4
Potri.006G077400 Populus trichocarpa HOM05D005730 ORTHO05D007038 3.6e-29 131.0 68 85.3
CANSAT01G0847 Cannabis sativa HOM05D005730 ORTHO05D007038 4.7e-29 130.6 68 82.4
PGR142G0999 Punica granatum HOM05D005730 ORTHO05D007038 6.1e-29 130.2 68 80.9
Lj2g0002952 Lotus japonicus HOM05D005730 ORTHO05D007038 8.0e-29 129.8 68 83.8
Actinidia38519 Actinidia chinensis HOM05D005730 ORTHO05D007038 1.0e-28 129.4 68 79.4
Glyma.07G130200 Glycine max HOM05D005730 ORTHO05D007038 1.4e-28 129.0 68 80.9
TPR.G21357 Trifolium pratense HOM05D005730 ORTHO05D007038 1.8e-28 128.6 66 81.8
VMungo0464G0384 Vigna mungo HOM05D002151 ORTHO05D002142 1.8e-28 128.6 67 80.6
GSVIVG01029731001 Vitis vinifera HOM05D005730 ORTHO05D007038 1.8e-28 128.6 68 80.9
ClCG06G014030 Citrullus lanatus HOM05D005730 ORTHO05D007038 2.3e-28 128.3 65 80.0
Manes.04G088600 Manihot esculenta HOM05D005730 ORTHO05D007038 2.3e-28 128.3 68 80.9
arahy.Tifrunner.gnm1.ann1.YLZA1F Arachis hypogaea HOM05D005730 ORTHO05D007038 5.2e-28 127.1 68 80.9
Phvul.010G060700 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 6.7e-28 126.7 68 79.4
arahy.Tifrunner.gnm1.ann1.8U1ME7 Arachis hypogaea HOM05D005730 ORTHO05D007038 8.8e-28 126.3 68 80.9
Dinv06659 Davidia involucrata HOM05D005730 ORTHO05D007038 8.8e-28 126.3 68 79.4
RcHm_v2.0_Chr6g0293611 Rosa chinensis HOM05D005730 ORTHO05D007038 8.8e-28 126.3 68 76.5
Sc09g0007480 Simmondsia chinensis HOM05D005730 ORTHO05D007038 8.8e-28 126.3 68 77.9
Lsat_1_v5_gn_7_59680 Lactuca sativa HOM05D005730 ORTHO05D007038 2.0e-27 125.2 67 79.1
Duzib170G0040 Durio zibethinus HOM05D005730 ORTHO05D007038 3.3e-27 124.4 68 76.5
HanXRQChr03g0064531 Helianthus annuus HOM05D005730 ORTHO05D007038 3.3e-27 124.4 67 76.1
HanXRQChr09g0243241 Helianthus annuus HOM05D005730 ORTHO05D007038 3.3e-27 124.4 67 76.1
Migut.L00209 Erythranthe guttata HOM05D005730 ORTHO05D007038 4.4e-27 124.0 66 80.3
Psat1g051120 Pisum sativum HOM05D005730 ORTHO05D007038 5.7e-27 123.6 66 75.8
RcHm_v2.0_Chr6g0293601 Rosa chinensis HOM05D005730 ORTHO05D007038 5.7e-27 123.6 68 76.5
CsaV3_1G004610 Cucumis sativus L. HOM05D005730 ORTHO05D007038 9.7e-27 122.9 68 77.9
ECA240G4690 Erigeron canadensis HOM05D005730 ORTHO05D007038 1.3e-26 122.5 67 76.1
SGA_v2.0_scaffold143G35734 Striga asiatica HOM05D005730 ORTHO05D007038 1.3e-26 122.5 66 77.3
unitig_26.g9132 Utricularia gibba HOM05D005730 ORTHO05D007038 1.3e-26 122.5 66 80.3
MELO3C017388.2 Cucumis melo HOM05D005730 ORTHO05D007038 1.7e-26 122.1 68 76.5
Migut.J00829 Erythranthe guttata HOM05D005730 ORTHO05D007038 1.7e-26 122.1 66 78.8
Duzib177G0654 Durio zibethinus HOM05D005730 ORTHO05D007038 2.2e-26 121.7 68 75.0
Nn2g12785 Nelumbo nucifera HOM05D005730 ORTHO05D007038 2.8e-26 121.3 68 77.9
Sed0021240 Sechium edule HOM05D005730 ORTHO05D007038 2.8e-26 121.3 65 81.5
CDE06G0649 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 3.7e-26 120.9 68 76.5
Os01g0750800 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 2.4e-25 118.2 68 72.1
PSO063G5181 Papaver somniferum HOM05D005730 ORTHO05D007038 3.1e-25 117.9 66 74.2
FAN07G1689 Fragaria x ananassa HOM05D005730 ORTHO05D007038 5.3e-25 117.1 103 55.3
Zm00001eb368480 Zea mays HOM05D005730 ORTHO05D007038 5.3e-25 117.1 68 70.6
FAN22G1024 Fragaria x ananassa HOM05D005730 ORTHO05D007038 7.0e-25 116.7 103 54.4
PSO170G3580 Papaver somniferum HOM05D005730 ORTHO05D007038 7.0e-25 116.7 66 71.2
Nitab4.5_0004188g0020 Nicotiana tabacum HOM05D005730 ORTHO05D007038 9.1e-25 116.3 67 68.7
Lalb_Chr14g0361711 Lupinus albus HOM05D005730 ORTHO05D007038 1.2e-24 115.9 68 72.1
Os01g0732100 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 1.6e-24 115.5 68 70.6
Sopen05g027690 Solanum pennellii HOM05D005730 ORTHO05D007038 3.5e-24 114.4 67 70.1
BcaC02g11258 Brassica carinata HOM05D005730 ORTHO05D007038 7.7e-24 113.2 52 100.0
C04p60960 Brassica napus HOM05D005730 ORTHO05D007038 7.7e-24 113.2 52 100.0
BraA04t17942Z Brassica rapa HOM05D000059 ORTHO05D000528 7.7e-24 113.2 52 100.0
TWI63G0907 Tripterygium wilfordii HOM05D005730 ORTHO05D007038 7.7e-24 113.2 66 68.2
BraA05t20340Z Brassica rapa HOM05D000059 ORTHO05D000528 1.7e-23 112.1 52 96.2
SHI37948 Sapria himalayana HOM05D005730 ORTHO05D007038 1.7e-23 112.1 67 71.6
Sabra06G0058600 Salix brachista HOM05D005730 ORTHO05D007038 5.0e-23 110.5 110 51.8
A05p14120 Brassica napus HOM05D005730 ORTHO05D007038 6.5e-23 110.2 52 94.2
HPP92_021358 Vanilla planifolia HOM05D005730 ORTHO05D007038 8.5e-23 109.8 68 69.1
AUR62020709 Chenopodium quinoa HOM05D005730 ORTHO05D007038 7.2e-22 106.7 59 79.7
Hma1.2p1_0314F.1_g121950 Hydrangea macrophylla HOM05D005730 ORTHO05D007038 1.2e-21 105.9 52 90.4
Peaxi162Scf00204g00039 Petunia axillaris HOM05D005730 ORTHO05D007038 2.1e-21 105.1 67 64.2
Cpa.g.sc115.33 Carica papaya HOM05D005730 ORTHO05D007038 2.7e-21 104.8 55 78.2
FAN17G1913 Fragaria x ananassa HOM05D005730 ORTHO05D007038 2.7e-21 104.8 65 67.7
Zm00001eb370910 Zea mays HOM05D005730 ORTHO05D007038 3.6e-21 104.4 68 66.2
EL10Ac2g03641 Beta vulgaris HOM05D005730 ORTHO05D007038 4.7e-21 104.0 52 88.5
AUR62028015 Chenopodium quinoa HOM05D005730 ORTHO05D007038 4.7e-21 104.0 52 86.5
FAN17G0140 Fragaria x ananassa HOM05D005730 ORTHO05D007038 8.0e-21 103.2 59 71.2
Peaxi162Scf00320g00055 Petunia axillaris HOM05D005730 ORTHO05D007038 8.0e-21 103.2 57 73.7
DCAR_019791 Daucus carota HOM05D005730 ORTHO05D007038 1.0e-20 102.8 52 82.7
TAR626G1073 Trochodendron aralioides HOM05D005730 ORTHO05D007038 1.0e-20 102.8 52 84.6
COL.COLO4_33448 Corchorus olitorius HOM05D005730 ORTHO05D007038 2.3e-20 101.7 52 82.7
vmacro20778 Vaccinium macrocarpon HOM05D005730 ORTHO05D007038 2.3e-20 101.7 64 65.6
FAN11G1086 Fragaria x ananassa HOM05D005730 ORTHO05D007038 2.6e-19 98.2 52 76.9
Medtr6g093010 Medicago truncatula HOM05D005730 ORTHO05D007038 3.4e-19 97.8 52 78.8
Ca_25629_v3 Cicer arietinum L. HOM05D005730 ORTHO05D007038 4.4e-19 97.4 53 75.5
FAN28G2060 Fragaria x ananassa HOM05D002523 ORTHO05D002951 4.4e-19 97.4 49 81.6
Nitab4.5_0000413g0090 Nicotiana tabacum HOM05D005730 ORTHO05D007038 5.7e-19 97.1 52 75.0
Nitab4.5_0005014g0020 Nicotiana tabacum HOM05D001912 ORTHO05D001975 5.7e-19 97.1 52 75.0
SalBow6G6230 Salvia bowleyana HOM05D005730 ORTHO05D007038 1.3e-18 95.9 52 76.9
HanXRQChr13g0388231 Helianthus annuus HOM05D005730 ORTHO05D007038 1.7e-18 95.5 52 75.0
Solyc05g046390.3 Solanum lycopersicum HOM05D005730 ORTHO05D007038 2.8e-18 94.7 52 76.9
Peaxi162Scf00906g00224 Petunia axillaris HOM05D005730 ORTHO05D007038 3.7e-18 94.4 52 73.1
Hund03236 Selenicereus undatus HOM05D005730 ORTHO05D007038 3.7e-18 94.4 52 75.0
PGSC0003DMG400013688 Solanum tuberosum HOM05D000482 ORTHO05D000349 4.8e-18 94.0 52 76.9
Pp3c25_300 Physcomitrium patens HOM05D005730 ORTHO05D007038 1.1e-17 92.8 67 61.2
ATR0568G059 Amborella trichopoda HOM05D005730 ORTHO05D007038 3.1e-17 91.3 52 76.9
Solyc09g059220.1 Solanum lycopersicum HOM05D005730 ORTHO05D007038 3.5e-16 87.8 67 55.2
Pp3c16_220 Physcomitrium patens HOM05D005730 ORTHO05D007038 1.3e-15 85.9 63 58.7
SEGI_08291 Sequoiadendron giganteum HOM05D005730 ORTHO05D007038 2.2e-15 85.1 52 67.3
Lj5A722T6 Lonicera japonica HOM05D005730 ORTHO05D007038 8.5e-15 83.2 40 90.0
Migut.L00210 Erythranthe guttata HOM05D005730 ORTHO05D007038 1.1e-14 82.8 50 70.0
CBR_g40455 Chara braunii HOM05D005730 ORTHO05D007038 1.9e-14 82.0 68 54.4
CDE02G1938 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 4.7e-13 77.4 42 76.2
Migut.K01179 Erythranthe guttata HOM05D005730 ORTHO05D007038 6.1e-13 77.0 44 72.7
MELO3C019212.2 Cucumis melo HOM05D005730 ORTHO05D007038 1.8e-12 75.5 48 64.6
Mapoly0005s0214 Marchantia polymorpha HOM05D005730 ORTHO05D007038 8.8e-12 73.2 68 47.1
MCO07G159 Micromonas commoda HOM05D005730 ORTHO05D007038 1.5e-11 72.4 65 46.2
SMO141G0046 Selaginella moellendorffii HOM05D005730 ORTHO05D007038 3.1e-09 64.7 67 41.8
Mapoly0005s0215 Marchantia polymorpha HOM05D005730 ORTHO05D007038 2.9e-07 58.2 52 44.2
SHI03111 Sapria himalayana HOM05D005730 ORTHO05D007038 2.9e-07 58.2 46 58.7
Medtr8g107150 Medicago truncatula HOM05D005730 ORTHO05D007038 9.5e-06 53.1 32 68.8


User provided reference genes

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