Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28527 Brassica carinata HOM05D000896 ORTHO05D000594 5.3e-139 497.7 247 100.0
BolC4t27574H Brassica oleracea HOM05D000896 ORTHO05D000594 5.3e-139 497.7 247 100.0
C04p60830 Brassica napus HOM05D000896 ORTHO05D000594 1.6e-132 476.1 247 97.6
BcaB06g28529 Brassica carinata HOM05D000896 ORTHO05D000594 6.3e-124 447.6 243 92.6
BraA04t17932Z Brassica rapa HOM05D000896 ORTHO05D000594 3.8e-121 438.3 240 91.2
C04p60850 Brassica napus HOM05D000896 ORTHO05D000594 3.3e-117 425.2 237 89.5
BolC4t27576H Brassica oleracea HOM05D000896 ORTHO05D000594 4.3e-117 424.9 237 89.9
A04p24120 Brassica napus HOM05D000896 ORTHO05D000594 1.1e-112 410.2 245 86.9
BcaB06g28558 Brassica carinata HOM05D000896 ORTHO05D000594 7.0e-75 284.6 239 66.9
BcaB06g28445 Brassica carinata HOM05D000896 ORTHO05D000594 7.8e-74 281.2 239 65.7
BcaNung01491 Brassica carinata HOM05D000896 ORTHO05D000594 2.6e-69 266.2 232 64.7
BcaB06g28569 Brassica carinata HOM05D000896 ORTHO05D000594 3.0e-65 252.7 240 59.2
BraA04t17973Z Brassica rapa HOM05D000896 ORTHO05D000594 2.5e-64 249.6 248 58.9
A04p24380 Brassica napus HOM05D000896 ORTHO05D000594 4.7e-63 245.4 245 60.0
BcaC02g07964 Brassica carinata HOM05D000896 ORTHO05D000594 5.2e-62 241.9 248 57.3
BolC4t27609H Brassica oleracea HOM05D000896 ORTHO05D000594 1.3e-60 237.3 244 57.0
C04p61210 Brassica napus HOM05D000896 ORTHO05D000594 1.7e-60 236.9 244 57.0
C04p61400 Brassica napus HOM05D000896 ORTHO05D000594 2.4e-59 233.0 248 57.3
C04p59750 Brassica napus HOM05D000896 ORTHO05D000594 3.9e-57 225.7 194 65.5
BraA04t17955Z Brassica rapa HOM05D000896 ORTHO05D000594 3.9e-57 225.7 255 55.3
A04p24520 Brassica napus HOM05D000896 ORTHO05D000594 5.1e-57 225.3 244 57.0
BolC4t27481H Brassica oleracea HOM05D000896 ORTHO05D000594 8.6e-57 224.6 191 66.0
A04p23440 Brassica napus HOM05D000896 ORTHO05D000594 1.5e-53 213.8 192 61.5
BcaB06g28447 Brassica carinata HOM05D000896 ORTHO05D000594 7.1e-51 204.9 175 62.9
BraA04t17871Z Brassica rapa HOM05D000896 ORTHO05D000594 4.6e-50 202.2 192 59.4
BolC4t27624H Brassica oleracea HOM05D000896 ORTHO05D000594 2.2e-44 183.3 198 57.6
BcaB02g10422 Brassica carinata HOM05D000896 ORTHO05D000594 1.4e-22 110.9 249 36.9
BcaC02g11296 Brassica carinata HOM05D000896 ORTHO05D000594 1.4e-22 110.9 229 36.7
BcaC02g11297 Brassica carinata HOM05D000896 ORTHO05D000594 1.4e-22 110.9 229 36.7
C04p17890 Brassica napus HOM05D000896 ORTHO05D000594 1.4e-22 110.9 229 36.7
BolC4t23337H Brassica oleracea HOM05D000896 ORTHO05D000594 1.4e-22 110.9 229 36.7
BraA05t20306Z Brassica rapa HOM05D000896 ORTHO05D000594 1.8e-22 110.5 229 36.2
A05p13690 Brassica napus HOM05D000896 ORTHO05D000594 2.4e-22 110.2 229 36.2
BraA05t20317Z Brassica rapa HOM05D000896 ORTHO05D000594 2.0e-21 107.1 223 39.0
CARHR125400 Cardamine hirsuta HOM05D000896 ORTHO05D000594 2.6e-21 106.7 145 42.1
C04p18170 Brassica napus HOM05D000896 ORTHO05D000594 1.3e-20 104.4 242 38.0
BolC4t23373H Brassica oleracea HOM05D000896 ORTHO05D000594 1.3e-20 104.4 242 38.0
A05p13800 Brassica napus HOM05D000896 ORTHO05D000594 1.7e-20 104.0 223 38.1
BcaC02g11280 Brassica carinata HOM05D000896 ORTHO05D000594 2.9e-20 103.2 229 37.6
CARHR125380 Cardamine hirsuta HOM05D000896 ORTHO05D000594 6.5e-20 102.1 123 42.3
AL4G27140 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 4.2e-19 99.4 124 41.9
Carub.0004s1302 Capsella rubella HOM05D000896 ORTHO05D000594 2.1e-18 97.1 140 41.4
AL4G26970 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.3e-17 94.4 146 39.7
Aa31LG1G8430 Aethionema arabicum HOM05D000896 ORTHO05D000594 1.3e-15 87.8 128 37.5
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 2.1e-15 87.0 99 46.5
C05p03980 Brassica napus HOM05D000896 ORTHO05D000594 2.8e-15 86.7 133 41.4
BolC5t29176H Brassica oleracea HOM05D000896 ORTHO05D000594 2.8e-15 86.7 133 41.4
AT2G31720 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 3.7e-15 86.3 129 38.0
C04p17910 Brassica napus HOM05D000896 ORTHO05D032691 6.3e-15 85.5 155 36.8
BolC4t23339H Brassica oleracea HOM05D000896 ORTHO05D032691 6.3e-15 85.5 155 36.8
AL1G15520 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 8.2e-15 85.1 136 38.2
BcaC05g24358 Brassica carinata HOM05D000896 ORTHO05D000594 1.1e-14 84.7 133 41.4
AL4G15340 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 3.1e-14 83.2 121 39.7
Thhalv10029259m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 5.3e-14 82.4 129 40.3
Thhalv10029471m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 2.0e-13 80.5 129 40.3
Thhalv10009984m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 4.5e-13 79.3 136 38.2
Aa31LG1G8310 Aethionema arabicum HOM05D000896 ORTHO05D000594 7.6e-13 78.6 116 37.1
Aa31LG1G8400 Aethionema arabicum HOM05D000896 ORTHO05D000594 7.6e-13 78.6 121 38.8
A09p17570 Brassica napus HOM05D000896 ORTHO05D000594 7.6e-13 78.6 120 38.3
BraA09t37387Z Brassica rapa HOM05D000896 ORTHO05D000594 7.6e-13 78.6 120 38.3
Carub.0007s1353 Capsella rubella HOM05D000896 ORTHO05D000594 7.6e-13 78.6 130 36.2
BcaC04g22224 Brassica carinata HOM05D000896 ORTHO05D000594 1.3e-12 77.8 120 38.3
C09p21870 Brassica napus HOM05D000896 ORTHO05D000594 1.3e-12 77.8 120 38.3
BolC9t55092H Brassica oleracea HOM05D000896 ORTHO05D000594 1.3e-12 77.8 120 38.3
Thhalv10029136m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 1.3e-12 77.8 125 37.6
BcaB07g31212 Brassica carinata HOM05D000896 ORTHO05D000594 2.2e-12 77.0 120 38.3
A09p67360 Brassica napus HOM05D000896 ORTHO05D000594 3.8e-12 76.3 151 39.7
BraA09t42067Z Brassica rapa HOM05D000896 ORTHO05D000594 3.8e-12 76.3 151 39.7
Aa31LG5G5500 Aethionema arabicum HOM05D000896 ORTHO05D000594 5.0e-12 75.9 129 33.3
C05p31330 Brassica napus HOM05D000896 ORTHO05D000594 5.0e-12 75.9 147 34.0
Aa31LG1G8320 Aethionema arabicum HOM05D000896 ORTHO05D000594 6.5e-12 75.5 132 34.8
Aa31LG1G8390 Aethionema arabicum HOM05D000896 ORTHO05D000594 6.5e-12 75.5 132 34.8
BcaC07g42126 Brassica carinata HOM05D000896 ORTHO05D000594 8.4e-12 75.1 150 38.7
C08p51670 Brassica napus HOM05D000896 ORTHO05D000594 8.4e-12 75.1 150 38.7
BolC8t52695H Brassica oleracea HOM05D000896 ORTHO05D000594 8.4e-12 75.1 150 38.7
Carub.0004s0407 Capsella rubella HOM05D000896 ORTHO05D000594 8.4e-12 75.1 128 34.4
SpUn0479_0020 Schrenkiella parvula HOM05D000896 ORTHO05D000594 1.1e-11 74.7 132 37.1
AL7G25460 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.9e-11 73.9 130 34.6
AL7G52070 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.9e-11 73.9 129 34.9
BcaB04g18266 Brassica carinata HOM05D000896 ORTHO05D000594 1.9e-11 73.9 130 39.2
Thhalv10009508m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 2.5e-11 73.6 136 34.6
AL3G40940 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 4.2e-11 72.8 139 36.0
AT2G18810 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 4.2e-11 72.8 108 38.9
BcaC05g24385 Brassica carinata HOM05D000896 ORTHO05D000594 4.2e-11 72.8 129 35.7
BcaC07g42125 Brassica carinata HOM05D000896 ORTHO05D000594 4.2e-11 72.8 150 38.0
C05p03790 Brassica napus HOM05D000896 ORTHO05D000594 4.2e-11 72.8 129 35.7
BolC5t29156H Brassica oleracea HOM05D000896 ORTHO05D000594 4.2e-11 72.8 129 35.7
AL3G40610 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 5.5e-11 72.4 139 36.0
BraA10t42685Z Brassica rapa HOM05D000896 ORTHO05D000594 5.5e-11 72.4 126 36.5
Carub.0003s2555 Capsella rubella HOM05D000896 ORTHO05D000594 5.5e-11 72.4 139 38.1
BcaC05g27223 Brassica carinata HOM05D000896 ORTHO05D000594 9.3e-11 71.6 150 34.0
BolC5t31856H Brassica oleracea HOM05D000896 ORTHO05D000594 9.3e-11 71.6 150 34.0
Carub.0001s0495 Capsella rubella HOM05D000896 ORTHO05D000594 9.3e-11 71.6 136 35.3
Carub.0004s1399 Capsella rubella HOM05D000896 ORTHO05D000594 1.2e-10 71.2 126 37.3
AL7G52080 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.6e-10 70.9 128 36.7
AT3G24850 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 1.6e-10 70.9 134 33.6
Carub.0007s3741 Capsella rubella HOM05D000896 ORTHO05D000594 1.6e-10 70.9 129 34.1
Aa31LG5G5490 Aethionema arabicum HOM05D000896 ORTHO05D000594 2.1e-10 70.5 127 32.3
Aa31sc1610G20 Aethionema arabicum HOM05D000896 ORTHO05D000594 2.1e-10 70.5 127 32.3
A09p34210 Brassica napus HOM05D000896 ORTHO05D000594 2.1e-10 70.5 132 37.1
A10p04160 Brassica napus HOM05D000896 ORTHO05D000594 2.1e-10 70.5 126 36.5
BraA09t38969Z Brassica rapa HOM05D000896 ORTHO05D000594 2.1e-10 70.5 132 37.1
AT5G38490 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 2.7e-10 70.1 127 33.9
Carub.0004s1432 Capsella rubella HOM05D000896 ORTHO05D000594 2.7e-10 70.1 130 35.4
SpUn1102_0010 Schrenkiella parvula HOM05D000896 ORTHO05D000594 2.7e-10 70.1 129 37.2
CARHR005050 Cardamine hirsuta HOM05D000896 ORTHO05D000594 7.9e-10 68.6 123 34.1
Sp4g13910 Schrenkiella parvula HOM05D000896 ORTHO05D000594 7.9e-10 68.6 130 30.8
BolC1t01330H Brassica oleracea HOM05D000896 ORTHO05D000594 1.0e-09 68.2 110 35.5
AL3G40220 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.8e-09 67.4 139 35.3
BcaB07g32861 Brassica carinata HOM05D000896 ORTHO05D000594 1.8e-09 67.4 153 35.3
BraA04t17946Z Brassica rapa HOM05D000896 ORTHO05D000594 1.8e-09 67.4 119 31.9
A04p24270 Brassica napus HOM05D000896 ORTHO05D000594 3.9e-09 66.2 119 31.9
Carub.0322s0001 Capsella rubella HOM05D000896 ORTHO05D000594 6.7e-09 65.5 130 36.2
AT1G32030 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 8.7e-09 65.1 130 36.9
AT3G49610 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 8.7e-09 65.1 130 33.8
AL1G15890 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.1e-08 64.7 127 35.4
Carub.0001s0530 Capsella rubella HOM05D000896 ORTHO05D000594 1.1e-08 64.7 119 38.7
AL1G46070 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.9e-08 63.9 130 35.4
AT5G24050 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 1.9e-08 63.9 139 34.5
ECA232G1636 Erigeron canadensis HOM05D000084 ORTHO05D002355 1.9e-08 63.9 124 35.5
AT2G32645 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 3.3e-08 63.2 123 34.1
BcaC02g07983 Brassica carinata HOM05D000896 ORTHO05D000594 3.3e-08 63.2 119 30.3
BcaC02g07988 Brassica carinata HOM05D000896 ORTHO05D000594 3.3e-08 63.2 119 30.3
C04p61050 Brassica napus HOM05D000896 ORTHO05D000594 3.3e-08 63.2 119 30.3
C04p61100 Brassica napus HOM05D000896 ORTHO05D000594 3.3e-08 63.2 119 30.3
BolC4t27592H Brassica oleracea HOM05D000896 ORTHO05D000594 3.3e-08 63.2 119 30.3
BcaB02g06859 Brassica carinata HOM05D000896 ORTHO05D000594 4.3e-08 62.8 130 32.3
CARHR005450 Cardamine hirsuta HOM05D000896 ORTHO05D000594 5.7e-08 62.4 129 32.6
Aa31LG1G8280 Aethionema arabicum HOM05D000896 ORTHO05D000594 7.4e-08 62.0 117 32.5
AL4G27540 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 7.4e-08 62.0 127 33.1
AL4G28060 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.3e-07 61.2 129 32.6
CsaV3_2G028710 Cucumis sativus L. HOM05D000896 ORTHO05D000594 1.6e-07 60.8 111 30.6
Gohir.D11G314050 Gossypium hirsutum HOM05D000896 ORTHO05D000594 1.6e-07 60.8 119 31.1
Sed0019902 Sechium edule HOM05D000896 ORTHO05D000594 1.6e-07 60.8 112 35.7
BcaB01g01586 Brassica carinata HOM05D000896 ORTHO05D000594 2.2e-07 60.5 124 30.6
Carub.0004s1350 Capsella rubella HOM05D000896 ORTHO05D000594 2.2e-07 60.5 127 33.1
Thhalv10029469m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 2.2e-07 60.5 113 34.5
THA.LOC104801542 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 2.2e-07 60.5 116 31.0
HanXRQChr08g0217011 Helianthus annuus HOM05D000896 ORTHO05D000594 2.8e-07 60.1 122 35.2
Psat2g011800 Pisum sativum HOM05D000896 ORTHO05D000594 3.7e-07 59.7 125 34.4
BraA09t42065Z Brassica rapa HOM05D000896 ORTHO05D000594 4.8e-07 59.3 129 37.2
THA.LOC104827386 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 4.8e-07 59.3 129 31.0
THA.LOC104827387 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 4.8e-07 59.3 129 31.0
Sp4g04670 Schrenkiella parvula HOM05D000896 ORTHO05D000594 6.3e-07 58.9 87 37.9
THA.LOC104826207 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 6.3e-07 58.9 126 30.2
THA.LOC104827391 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 6.3e-07 58.9 129 31.8
AT2G31420 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 1.1e-06 58.2 126 33.3
C08p51650 Brassica napus HOM05D000896 ORTHO05D000594 1.1e-06 58.2 129 34.9
BolC8t52693H Brassica oleracea HOM05D000896 ORTHO05D000594 1.1e-06 58.2 129 34.9
CARHR217360 Cardamine hirsuta HOM05D000896 ORTHO05D000594 1.1e-06 58.2 117 30.8
ECA233G1548 Erigeron canadensis HOM05D000896 ORTHO05D000594 1.1e-06 58.2 122 36.1
Gohir.D13G231566 Gossypium hirsutum HOM05D000896 ORTHO05D000594 1.1e-06 58.2 119 29.4
Sp6g07490 Schrenkiella parvula HOM05D000896 ORTHO05D000594 1.1e-06 58.2 130 33.1
A09p67340 Brassica napus HOM05D000896 ORTHO05D000594 1.4e-06 57.8 129 36.4
BolC4t27593H Brassica oleracea HOM05D000896 ORTHO05D000594 1.4e-06 57.8 119 28.6
CsaV3_5G027950 Cucumis sativus L. HOM05D000896 ORTHO05D000594 1.4e-06 57.8 116 34.5
Lj4g0007022 Lotus japonicus HOM05D000896 ORTHO05D000594 1.4e-06 57.8 119 33.6
PGSC0003DMG400043436 Solanum tuberosum HOM05D000896 ORTHO05D000594 1.4e-06 57.8 124 34.7
MELO3C010986.2 Cucumis melo HOM05D000896 ORTHO05D000594 1.8e-06 57.4 116 33.6
CsaV3_2G029240 Cucumis sativus L. HOM05D000896 ORTHO05D000594 1.8e-06 57.4 114 34.2
ECA234G2554 Erigeron canadensis HOM05D000896 ORTHO05D000594 2.4e-06 57.0 122 33.6
Lsat_1_v5_gn_4_21060 Lactuca sativa HOM05D000896 ORTHO05D000594 2.4e-06 57.0 123 33.3
BcaC02g07987 Brassica carinata HOM05D000896 ORTHO05D000594 3.1e-06 56.6 96 34.4
C04p61020 Brassica napus HOM05D000896 ORTHO05D000594 3.1e-06 56.6 96 34.4
Ciclev10029971m.g Citrus clementina HOM05D000896 ORTHO05D000594 3.1e-06 56.6 123 33.3
THA.LOC104827390 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 3.1e-06 56.6 129 30.2
AT2G31862 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 4.1e-06 56.2 104 39.4
Gohir.D13G231533 Gossypium hirsutum HOM05D000896 ORTHO05D000594 5.3e-06 55.8 119 31.1
Lsat_1_v5_gn_3_76781 Lactuca sativa HOM05D000896 ORTHO05D000594 5.3e-06 55.8 116 28.4
MD07G1290000 Malus domestica HOM05D000896 ORTHO05D000594 5.3e-06 55.8 125 32.8
DCAR_013087 Daucus carota HOM05D000896 ORTHO05D000594 6.9e-06 55.5 114 30.7
Thhalv10012233m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 9.0e-06 55.1 120 30.0
Thhalv10017854m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 9.0e-06 55.1 211 26.5


User provided reference genes

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