Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 3.4e-175 618.2 311 100.0
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 1.9e-173 612.5 309 99.4
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 5.0e-171 604.4 311 96.8
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 5.2e-168 594.3 329 92.1
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 4.1e-157 558.1 309 90.9
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 1.3e-155 553.1 311 91.0
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 5.1e-155 551.2 309 90.6
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.2e-151 540.0 309 88.3
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 9.2e-149 530.4 310 86.1
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 1.2e-148 530.0 312 84.3
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 2.5e-146 522.3 312 84.0
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 8.1e-145 517.3 309 87.1
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 5.1e-139 498.0 309 82.2
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 3.4e-127 458.8 309 74.1
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 1.2e-119 433.7 275 79.3
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 2.0e-119 433.0 261 80.5
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.7e-118 429.9 300 73.7
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.7e-118 429.9 300 73.7
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 1.7e-118 429.9 244 82.0
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 6.5e-118 427.9 300 73.3
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 6.5e-118 427.9 244 81.6
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 8.4e-118 427.6 258 79.1
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 1.1e-117 427.2 245 83.3
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 1.4e-117 426.8 242 83.5
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 1.9e-117 426.4 241 83.4
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 1.9e-117 426.4 241 83.4
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 2.5e-117 426.0 244 82.0
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 3.2e-117 425.6 307 70.7
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 7.1e-117 424.5 259 78.4
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 9.3e-117 424.1 244 81.6
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 1.2e-116 423.7 258 77.1
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 2.1e-116 422.9 243 81.5
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 2.7e-116 422.5 303 70.6
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 2.7e-116 422.5 289 72.0
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 4.6e-116 421.8 270 75.9
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 4.6e-116 421.8 272 75.4
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 6.1e-116 421.4 240 82.5
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 6.1e-116 421.4 271 74.9
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 7.9e-116 421.0 243 80.7
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 1.3e-115 420.2 246 79.7
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.8e-115 419.9 245 80.8
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 2.3e-115 419.5 286 72.7
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 3.0e-115 419.1 245 80.0
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 3.0e-115 419.1 282 72.7
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 3.0e-115 419.1 246 80.1
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 3.9e-115 418.7 243 79.8
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 3.9e-115 418.7 323 66.9
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 5.1e-115 418.3 298 69.5
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 5.1e-115 418.3 273 72.5
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 6.7e-115 417.9 275 73.5
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 8.7e-115 417.5 302 68.9
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 1.1e-114 417.2 242 79.3
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 2.5e-114 416.0 243 79.4
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 5.7e-114 414.8 242 80.6
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 5.7e-114 414.8 242 81.0
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 9.7e-114 414.1 246 78.0
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 1.3e-113 413.7 253 77.5
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 2.2e-113 412.9 242 79.8
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 2.2e-113 412.9 279 72.8
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 2.2e-113 412.9 272 73.2
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.7e-113 412.1 270 73.3
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 6.3e-113 411.4 303 66.7
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 6.3e-113 411.4 246 78.9
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 8.2e-113 411.0 248 77.4
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 8.2e-113 411.0 272 72.4
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 1.8e-112 409.8 275 73.8
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 2.4e-112 409.5 281 71.2
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 3.1e-112 409.1 242 79.3
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 5.3e-112 408.3 304 67.1
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 5.3e-112 408.3 311 65.9
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 6.9e-112 407.9 242 78.1
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 4.5e-111 405.2 246 76.8
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.7e-110 403.3 261 75.1
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 1.7e-110 403.3 296 66.6
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 3.8e-110 402.1 281 70.5
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 5.0e-110 401.7 271 70.5
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 6.5e-110 401.4 279 70.3
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 1.1e-109 400.6 246 75.6
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 1.6e-108 396.7 245 75.1
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 2.7e-108 396.0 252 71.8
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 1.0e-107 394.0 308 64.0
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 1.8e-107 393.3 242 75.2
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 2.3e-107 392.9 308 63.3
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 2.3e-107 392.9 245 74.7
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 3.9e-107 392.1 285 68.4
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 2.0e-106 389.8 245 73.1
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 3.3e-106 389.0 300 66.0
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 7.4e-106 387.9 213 85.0
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 6.3e-105 384.8 278 66.5
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 1.4e-104 383.6 279 67.4
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 9.1e-104 380.9 248 74.2
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 1.0e-102 377.5 304 62.8
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 1.7e-102 376.7 286 67.8
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 5.0e-102 375.2 282 64.9
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 3.2e-101 372.5 397 51.6
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 4.2e-101 372.1 212 81.1
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 2.7e-100 369.4 256 70.7
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 4.7e-100 368.6 234 76.5
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 8.8e-99 364.4 282 67.4
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.3e-94 350.5 241 70.5
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 2.9e-94 349.4 371 51.8
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 3.8e-94 349.0 347 52.7
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 2.7e-92 342.8 248 67.3
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 5.2e-91 338.6 261 67.4
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 5.7e-90 335.1 283 56.5
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 7.4e-90 334.7 279 62.4
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 9.1e-88 327.8 212 75.5
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 1.0e-86 324.3 243 66.3
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 1.9e-85 320.1 244 59.4
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 8.8e-83 311.2 245 64.1
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.6e-79 300.4 234 65.4
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 3.5e-79 299.3 226 72.1
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 4.4e-74 282.3 213 61.0
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 3.7e-73 279.3 281 49.5
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 4.9e-73 278.9 167 78.4
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 1.9e-69 266.9 177 74.0
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 2.3e-67 260.0 165 74.5
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 1.2e-66 257.7 254 52.4
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 3.4e-66 256.1 258 48.1
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 3.7e-65 252.7 159 74.8
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 3.3e-61 239.6 141 79.4
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 8.9e-59 231.5 252 43.3
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 5.8e-58 228.8 206 58.7
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.1e-56 224.6 140 77.9
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 1.1e-56 224.6 306 47.4
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 5.4e-56 222.2 191 60.7
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 1.5e-53 214.2 138 72.5
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 3.3e-53 213.0 136 80.1
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 3.3e-53 213.0 136 80.1
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 2.1e-52 210.3 131 74.8
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 1.1e-51 208.0 113 85.8
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 1.8e-51 207.2 238 45.4
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 8.3e-49 198.4 193 52.3
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 1.1e-48 198.0 164 66.5
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.9e-48 197.2 146 66.4
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 5.4e-48 195.7 126 74.6
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 1.3e-46 191.0 109 78.9
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 1.6e-44 184.1 106 79.2
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 2.1e-44 183.7 110 77.3
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 4.0e-43 179.5 99 79.8
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.4e-40 171.0 239 37.2
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 3.9e-38 162.9 92 80.4
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 9.6e-37 158.3 242 37.6
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 1.2e-36 157.9 247 38.1
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 1.2e-34 151.4 120 59.2
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 7.6e-34 148.7 82 80.5
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 1.9e-32 144.1 76 85.5
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 2.1e-31 140.6 77 81.8
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 1.3e-30 137.9 106 64.2
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 1.1e-27 128.3 76 72.4
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 6.9e-27 125.6 88 72.7
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 6.9e-27 125.6 66 83.3
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 1.3e-22 111.3 245 30.2
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.0e-22 110.2 59 83.1
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 3.3e-21 106.7 65 81.5
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 4.3e-21 106.3 56 78.6
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 2.8e-20 103.6 95 57.9
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 6.4e-17 92.4 50 82.0
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 2.4e-16 90.5 113 48.7
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 1.0e-14 85.1 48 77.1
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 7.4e-13 79.0 133 35.3
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 7.4e-13 79.0 61 49.2
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 2.1e-12 77.4 44 81.8
CARHR124880 Cardamine hirsuta HOM05D004373 ORTHO05D005203 2.6e-10 70.5 88 54.5
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 4.2e-08 63.2 102 34.3
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 1.0e-06 58.5 76 40.8


User provided reference genes

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