Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 0.0e+00 1716.0 874 100.0
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 0.0e+00 1581.6 871 91.3
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 0.0e+00 1579.7 872 91.2
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 0.0e+00 1575.8 872 90.9
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 0.0e+00 1572.8 864 91.8
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 0.0e+00 1538.1 874 88.1
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 0.0e+00 1525.0 797 95.1
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 0.0e+00 1516.5 876 87.9
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 0.0e+00 1512.3 878 86.7
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 0.0e+00 1434.5 881 83.1
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 0.0e+00 1431.4 881 83.7
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 0.0e+00 1429.5 873 83.5
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 0.0e+00 1427.2 884 82.4
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 0.0e+00 1261.1 796 81.7
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1187.9 901 70.4
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1180.6 899 70.2
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 0.0e+00 1126.7 893 67.3
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 0.0e+00 1123.6 883 67.0
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 0.0e+00 1120.5 895 66.0
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 0.0e+00 1112.4 891 66.1
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1109.4 888 66.6
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1104.0 892 66.1
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 0.0e+00 1099.0 893 65.2
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1095.9 892 65.7
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 0.0e+00 1094.3 835 67.9
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1092.8 892 65.5
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1091.3 890 65.4
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1090.5 834 67.5
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 0.0e+00 1085.1 898 63.7
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 0.0e+00 1083.6 834 67.9
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 0.0e+00 1078.5 890 64.7
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1078.5 905 64.0
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1075.8 892 64.3
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 2.4e-311 1072.0 883 64.1
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 2.6e-310 1068.5 925 61.8
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 4.5e-310 1067.8 872 63.9
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 5.9e-310 1067.4 893 63.9
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 7.7e-310 1067.0 886 63.1
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 1.0e-309 1066.6 810 68.3
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 3.8e-309 1064.7 895 63.4
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 6.5e-309 1063.9 893 63.0
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 1.1e-308 1063.1 832 67.3
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 2.5e-308 1062.0 889 64.1
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 7.2e-308 1060.4 887 62.9
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 7.2e-308 1060.4 901 64.4
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 2.1e-307 1058.9 896 63.2
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 4.7e-307 1057.7 891 63.9
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 4.7e-307 1057.7 807 67.8
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 4.7e-307 1057.7 884 63.9
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 6.1e-307 1057.4 900 63.0
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 6.1e-307 1057.4 879 64.5
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 1.0e-306 1056.6 890 63.4
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 1.8e-306 1055.8 814 67.2
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 3.0e-306 1055.0 904 65.2
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 8.8e-306 1053.5 790 68.7
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 8.8e-306 1053.5 881 63.3
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 8.8e-306 1053.5 801 68.0
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 8.8e-306 1053.5 894 63.4
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 8.8e-306 1053.5 817 67.1
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 1.5e-305 1052.7 828 66.1
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 7.5e-305 1050.4 808 67.3
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 3.7e-304 1048.1 916 61.6
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 6.3e-304 1047.3 836 64.8
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 8.3e-304 1047.0 889 63.6
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 4.1e-303 1044.6 831 65.8
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 4.1e-303 1044.6 872 63.6
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 4.1e-303 1044.6 837 65.0
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 5.4e-303 1044.3 893 62.9
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 1.2e-302 1043.1 827 66.0
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 1.6e-302 1042.7 905 62.1
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 1.6e-302 1042.7 884 63.6
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 5.9e-302 1040.8 822 66.5
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 5.9e-302 1040.8 832 65.6
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 1.0e-301 1040.0 798 67.4
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 1.3e-301 1039.6 874 63.6
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 8.5e-301 1036.9 810 67.8
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 2.5e-300 1035.4 726 71.3
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 3.2e-300 1035.0 831 65.2
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 3.2e-300 1035.0 812 66.3
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 7.2e-300 1033.9 812 66.3
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 1.2e-299 1033.1 814 66.8
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 1.2e-299 1033.1 900 61.4
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 2.3e-298 1028.9 834 65.6
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 6.8e-298 1027.3 835 64.9
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 3.4e-297 1025.0 833 64.7
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 4.4e-297 1024.6 771 69.1
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 9.8e-297 1023.5 812 66.7
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 2.4e-295 1018.8 837 63.0
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 5.4e-295 1017.7 867 62.2
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 7.0e-295 1017.3 867 62.2
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 2.7e-294 1015.4 813 66.1
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 3.5e-294 1015.0 867 62.1
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 8.6e-293 1010.4 840 65.5
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 1.6e-291 1006.1 900 61.0
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 1.6e-291 1006.1 838 64.9
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 8.0e-291 1003.8 888 62.5
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 4.0e-290 1001.5 882 61.7
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 6.8e-290 1000.7 874 61.7
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 2.6e-289 998.8 906 60.6
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 4.4e-289 998.0 814 64.4
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 4.4e-289 998.0 893 61.1
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 5.7e-289 997.7 894 62.1
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 1.8e-287 992.6 895 60.4
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 3.2e-287 991.9 788 65.2
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 9.2e-287 990.3 838 63.8
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 2.7e-286 988.8 822 63.0
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 4.6e-286 988.0 893 61.1
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 1.7e-285 986.1 900 61.1
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 2.8e-283 978.8 888 60.8
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 5.8e-281 971.1 830 63.3
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 4.9e-280 968.0 834 61.2
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 3.5e-278 961.8 839 60.5
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 1.0e-277 960.3 825 61.9
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 1.9e-276 956.1 843 62.0
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 9.5e-276 953.7 900 58.4
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 1.2e-275 953.4 875 59.9
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 8.1e-275 950.7 830 61.8
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 2.6e-273 945.7 802 62.0
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 9.8e-273 943.7 829 60.8
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 1.2e-270 936.8 871 57.4
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 5.2e-266 921.4 602 74.6
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 6.8e-266 921.0 799 60.1
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 3.4e-265 918.7 848 59.7
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 5.4e-263 911.4 590 75.4
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 4.6e-254 881.7 810 59.9
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 4.0e-250 868.6 825 55.6
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 6.9e-250 867.8 966 52.0
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 7.9e-246 854.4 814 57.4
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 3.9e-245 852.0 812 57.4
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 1.5e-244 850.1 636 71.5
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 3.3e-244 849.0 817 56.3
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 6.2e-243 844.7 797 54.7
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 3.4e-241 839.0 779 60.6
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 5.8e-241 838.2 636 70.6
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 9.6e-236 820.8 830 54.7
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 3.8e-232 808.9 900 49.8
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 2.5e-231 806.2 858 53.8
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 8.7e-229 797.7 841 52.1
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 1.3e-227 793.9 624 63.5
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 1.6e-227 793.5 840 53.3
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 3.7e-227 792.3 862 50.9
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 4.8e-227 792.0 818 52.6
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 2.2e-211 740.0 812 52.0
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 3.8e-208 729.2 575 62.1
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 1.1e-207 727.6 630 55.2
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 9.4e-207 724.5 812 48.6
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 1.2e-198 697.6 594 57.1
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 2.1e-182 643.7 616 52.4
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 2.3e-181 640.2 596 59.9
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 2.4e-162 577.0 582 54.1
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 1.8e-149 534.3 815 40.7
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 1.3e-139 501.5 571 46.1
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 4.8e-134 483.0 401 68.6
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 7.4e-119 432.6 438 55.9
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 2.8e-118 430.6 574 40.8
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 3.7e-118 430.3 458 54.6
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 8.4e-115 419.1 264 79.2
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 4.5e-108 396.7 490 45.9
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 6.7e-96 356.3 264 69.7
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 2.0e-95 354.8 435 47.1
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 4.1e-93 347.1 366 62.3
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 5.9e-92 343.2 700 31.3
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 2.3e-88 331.3 176 90.9
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 2.2e-78 298.1 226 61.9
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 5.2e-64 250.4 522 29.1
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 7.0e-61 240.0 505 29.7
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 9.5e-58 229.6 158 72.2
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 1.1e-32 146.4 187 47.1
Sc17g0000730 Simmondsia chinensis HOM05D003973 ORTHO05D004679 4.6e-20 104.4 205 36.6
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 1.3e-19 102.8 74 71.6
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 8.7e-19 100.1 79 59.5
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 1.6e-17 95.9 123 48.0
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 1.6e-09 69.3 52 61.5


User provided reference genes

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