Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28424 Brassica carinata HOM05D003989 ORTHO05D004626 4.2e-56 221.1 109 100.0
Thhalv10017243m.g Eutrema salsugineum HOM05D003989 ORTHO05D004626 3.2e-40 168.3 148 61.5
BraA03t11012Z Brassica rapa HOM05D003989 ORTHO05D004626 4.7e-39 164.5 148 61.5
BcaC01g05976 Brassica carinata HOM05D003989 ORTHO05D004626 1.0e-38 163.3 148 60.8
C03p20540 Brassica napus HOM05D003989 ORTHO05D004626 1.0e-38 163.3 148 60.8
BolC3t14434H Brassica oleracea HOM05D003989 ORTHO05D004626 1.0e-38 163.3 148 60.8
BcaB01g04061 Brassica carinata HOM05D003989 ORTHO05D004626 1.8e-38 162.5 148 60.1
Sp4g13620 Schrenkiella parvula HOM05D003989 ORTHO05D004626 5.2e-38 161.0 148 58.8
AL4G26330 Arabidopsis lyrata HOM05D003989 ORTHO05D004626 4.8e-36 154.5 146 57.5
AT2G31140 Arabidopsis thaliana HOM05D003989 ORTHO05D004626 1.4e-35 152.9 146 56.8
Carub.0004s1243 Capsella rubella HOM05D003989 ORTHO05D004626 2.4e-35 152.1 146 56.8
BraA10t42752Z Brassica rapa HOM05D003989 ORTHO05D004626 2.2e-33 145.6 146 53.4
BcaB02g06815 Brassica carinata HOM05D003989 ORTHO05D004626 3.8e-33 144.8 146 53.4
C05p04520 Brassica napus HOM05D003989 ORTHO05D004626 3.8e-33 144.8 146 52.7
Aa31LG5G5780 Aethionema arabicum HOM05D003989 ORTHO05D004626 5.0e-33 144.4 146 54.1
BcaC05g24296 Brassica carinata HOM05D003989 ORTHO05D004626 5.0e-33 144.4 146 52.1
Thhalv10008791m.g Eutrema salsugineum HOM05D003989 ORTHO05D004626 1.2e-31 139.8 146 51.4
Carub.0001s0556 Capsella rubella HOM05D003989 ORTHO05D004626 6.1e-31 137.5 146 50.0
CARHR005730 Cardamine hirsuta HOM05D003989 ORTHO05D004626 6.1e-31 137.5 146 50.7
AT1G06200 Arabidopsis thaliana HOM05D003989 ORTHO05D004626 1.8e-30 136.0 148 49.3
BolC5t29223H Brassica oleracea HOM05D003989 ORTHO05D004626 3.0e-30 135.2 159 48.4
AL1G16180 Arabidopsis lyrata HOM05D003989 ORTHO05D004626 4.0e-30 134.8 146 49.3
Sp1g05010 Schrenkiella parvula HOM05D003989 ORTHO05D004626 1.2e-29 133.3 146 51.4
BcaB03g13432 Brassica carinata HOM05D003989 ORTHO05D004626 2.0e-29 132.5 146 50.0
CARHR124740 Cardamine hirsuta HOM05D003989 ORTHO05D004626 2.6e-29 132.1 146 50.0
THA.LOC104815848 Tarenaya hassleriana HOM05D003989 ORTHO05D004626 1.3e-28 129.8 146 48.6
BraA08t35517Z Brassica rapa HOM05D003989 ORTHO05D004626 2.8e-28 128.6 146 47.3
C08p02410 Brassica napus HOM05D003989 ORTHO05D004626 3.1e-27 125.2 154 46.1
A08p36100 Brassica napus HOM05D003989 ORTHO05D004626 1.2e-26 123.2 154 45.5
THA.LOC104800868 Tarenaya hassleriana HOM05D003989 ORTHO05D004626 1.2e-26 123.2 148 47.3
Thecc.01G257400 Theobroma cacao HOM05D003989 ORTHO05D004626 1.3e-25 119.8 146 45.9
Duzib211G0528 Durio zibethinus HOM05D003989 ORTHO05D004626 1.7e-25 119.4 146 45.2
Cfa002434 Carpinus fangiana HOM05D003989 ORTHO05D004626 8.6e-25 117.1 147 46.3
Hma1.2p1_0273F.1_g109620 Hydrangea macrophylla HOM05D003989 ORTHO05D004626 1.9e-24 115.9 146 45.2
Hund02930 Selenicereus undatus HOM05D003989 ORTHO05D004626 1.9e-24 115.9 146 42.5
Sc05g0000580 Simmondsia chinensis HOM05D003989 ORTHO05D004626 1.9e-24 115.9 146 42.5
Cpa.g.sc50.14 Carica papaya HOM05D003989 ORTHO05D004626 2.5e-24 115.5 146 45.2
CiPaw.03G265100 Carya illinoinensis HOM05D003989 ORTHO05D004626 2.5e-24 115.5 146 43.2
RcHm_v2.0_Chr6g0287951 Rosa chinensis HOM05D003989 ORTHO05D004626 2.5e-24 115.5 146 42.5
Prupe.8G222700 Prunus persica HOM05D003989 ORTHO05D004626 3.3e-24 115.2 146 43.8
Gohir.D07G155200 Gossypium hirsutum HOM05D003989 ORTHO05D004626 4.2e-24 114.8 146 42.5
MD10G1183600 Malus domestica HOM05D003989 ORTHO05D004626 4.2e-24 114.8 146 43.2
Nn1g02783 Nelumbo nucifera HOM05D003989 ORTHO05D004626 4.2e-24 114.8 152 40.8
MD05G1196300 Malus domestica HOM05D003989 ORTHO05D004626 5.5e-24 114.4 146 43.2
Cc01_g18270 Coffea canephora HOM05D003989 ORTHO05D004626 7.2e-24 114.0 146 44.5
Gorai.001G177700 Gossypium raimondii HOM05D003989 ORTHO05D004626 9.5e-24 113.6 149 41.6
Manes.12G032900 Manihot esculenta HOM05D003989 ORTHO05D004626 9.5e-24 113.6 146 44.5
TAR636G0965 Trochodendron aralioides HOM05D003989 ORTHO05D004626 9.5e-24 113.6 146 43.2
FvH4_2g21360 Fragaria vesca HOM05D003989 ORTHO05D004626 1.2e-23 113.2 146 43.2
DCAR_012550 Daucus carota HOM05D003989 ORTHO05D004626 1.6e-23 112.8 146 43.2
Nitab4.5_0000470g0010 Nicotiana tabacum HOM05D003989 ORTHO05D004626 1.6e-23 112.8 146 43.2
ECA236G3729 Erigeron canadensis HOM05D003989 ORTHO05D004626 2.1e-23 112.5 146 41.8
MBI10_g23171_MAGBIO Magnolia biondii HOM05D003989 ORTHO05D004626 2.1e-23 112.5 146 43.8
Gorai.001G254000 Gossypium raimondii HOM05D003989 ORTHO05D004626 2.8e-23 112.1 146 43.2
HanXRQChr04g0115141 Helianthus annuus HOM05D003989 ORTHO05D004626 3.6e-23 111.7 146 41.8
Lsat_1_v5_gn_8_92701 Lactuca sativa HOM05D003989 ORTHO05D004626 3.6e-23 111.7 146 42.5
Potri.002G037900 Populus trichocarpa HOM05D003989 ORTHO05D004626 3.6e-23 111.7 146 43.2
vmacro14818 Vaccinium macrocarpon HOM05D003989 ORTHO05D004626 3.6e-23 111.7 146 42.5
Gohir.A07G148900 Gossypium hirsutum HOM05D003989 ORTHO05D004626 4.7e-23 111.3 149 40.9
Potri.005G225100 Populus trichocarpa HOM05D003989 ORTHO05D004626 4.7e-23 111.3 146 41.8
Atru.chr5.1704 Acer truncatum HOM05D003989 ORTHO05D004626 6.1e-23 110.9 146 43.8
Migut.N02208 Erythranthe guttata HOM05D003989 ORTHO05D004626 6.1e-23 110.9 145 42.1
Peaxi162Scf01280g00015 Petunia axillaris HOM05D003989 ORTHO05D004626 6.1e-23 110.9 146 42.5
Solyc09g025250.4 Solanum lycopersicum HOM05D003989 ORTHO05D004626 6.1e-23 110.9 146 42.5
Sopen09g028270 Solanum pennellii HOM05D003989 ORTHO05D004626 6.1e-23 110.9 146 42.5
EL10As5g23494 Beta vulgaris HOM05D003989 ORTHO05D004626 8.0e-23 110.5 145 40.7
SGA_v2.0_scaffold2G00880 Striga asiatica HOM05D003989 ORTHO05D004626 8.0e-23 110.5 145 41.4
Rhsim01G0262900 Rhododendron simsii HOM05D003989 ORTHO05D004626 1.0e-22 110.2 146 41.1
PGSC0003DMG400010319 Solanum tuberosum HOM05D003989 ORTHO05D004626 1.0e-22 110.2 147 42.2
CsaV3_7G027030 Cucumis sativus L. HOM05D003989 ORTHO05D004626 1.4e-22 109.8 146 41.1
CSS0015006 Camellia sinensis var. sinensis HOM05D003989 ORTHO05D004626 1.8e-22 109.4 146 44.5
Rhsim13G0035500 Rhododendron simsii HOM05D003989 ORTHO05D004626 1.8e-22 109.4 146 41.1
Sabra05G0173700 Salix brachista HOM05D003989 ORTHO05D004626 1.8e-22 109.4 146 40.4
Oeu063312.1 Olea europaea HOM05D003989 ORTHO05D004626 2.3e-22 109.0 146 41.8
Dinv22401 Davidia involucrata HOM05D003989 ORTHO05D004626 3.0e-22 108.6 146 43.2
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 4.0e-22 108.2 146 41.8
vmacro02667 Vaccinium macrocarpon HOM05D003989 ORTHO05D004626 4.0e-22 108.2 146 42.5
PSO210G1270 Papaver somniferum HOM05D003989 ORTHO05D004626 5.2e-22 107.8 146 39.7
PSO832G2594 Papaver somniferum HOM05D003989 ORTHO05D004626 5.2e-22 107.8 146 39.7
Actinidia07300 Actinidia chinensis HOM05D003989 ORTHO05D004626 6.8e-22 107.5 146 42.5
Haze_24640 Corylus avellana HOM05D003989 ORTHO05D004626 6.8e-22 107.5 171 39.2
Migut.D00429 Erythranthe guttata HOM05D003989 ORTHO05D004626 6.8e-22 107.5 148 40.5
Lj5g0003366 Lotus japonicus HOM05D003989 ORTHO05D004626 6.8e-22 107.5 146 44.5
Hund09614 Selenicereus undatus HOM05D003989 ORTHO05D004626 6.8e-22 107.5 148 39.9
CDE04G0538 Ceratophyllum demersum HOM05D001473 ORTHO05D003900 1.2e-21 106.7 146 41.1
Sed0015900 Sechium edule HOM05D003989 ORTHO05D004626 1.2e-21 106.7 146 40.4
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 1.2e-21 106.7 145 42.1
Medtr1g069900 Medicago truncatula HOM05D003989 ORTHO05D004626 1.5e-21 106.3 146 41.1
Psat6g041800 Pisum sativum HOM05D003989 ORTHO05D004626 1.5e-21 106.3 146 40.4
Ca_09678_v3 Cicer arietinum L. HOM05D003989 ORTHO05D004626 2.0e-21 105.9 146 40.4
FAN24G0489 Fragaria x ananassa HOM05D003989 ORTHO05D004626 2.0e-21 105.9 152 40.8
Lj1A67G39 Lonicera japonica HOM05D003989 ORTHO05D004626 2.0e-21 105.9 145 42.1
TAR362G1008 Trochodendron aralioides HOM05D003989 ORTHO05D004626 2.0e-21 105.9 146 41.8
GSVIVG01028345001 Vitis vinifera HOM05D003989 ORTHO05D004626 2.6e-21 105.5 145 42.8
FAN15G1221 Fragaria x ananassa HOM05D003989 ORTHO05D004626 3.4e-21 105.1 151 41.1
FAN20G0664 Fragaria x ananassa HOM05D003989 ORTHO05D004626 3.4e-21 105.1 151 41.1
Hma1.2p1_0576F.1_g182030 Hydrangea macrophylla HOM05D003989 ORTHO05D004626 3.4e-21 105.1 145 43.4
AUR62024686 Chenopodium quinoa HOM05D003989 ORTHO05D004626 4.4e-21 104.8 145 39.3
Os04g0102600 Oryza sativa ssp. japonica HOM05D003989 ORTHO05D004626 4.4e-21 104.8 145 40.7
TPR.G23970 Trifolium pratense HOM05D003989 ORTHO05D004626 4.4e-21 104.8 146 40.4
TAR633G0447 Trochodendron aralioides HOM05D003989 ORTHO05D004626 4.4e-21 104.8 146 39.7
CAN.G1147.6 Capsicum annuum HOM05D003989 ORTHO05D004626 5.7e-21 104.4 154 40.9
MELO3C012749.2 Cucumis melo HOM05D003989 ORTHO05D004626 7.5e-21 104.0 152 40.1
FAN27G0191 Fragaria x ananassa HOM05D003989 ORTHO05D004626 7.5e-21 104.0 151 40.4
TWI12G0613 Tripterygium wilfordii HOM05D003989 ORTHO05D004626 7.5e-21 104.0 147 39.5
CANSAT01G0960 Cannabis sativa HOM05D003989 ORTHO05D004626 9.8e-21 103.6 146 39.7
COL.COLO4_03876 Corchorus olitorius HOM05D003989 ORTHO05D004626 9.8e-21 103.6 146 39.7
TWI75G1341 Tripterygium wilfordii HOM05D003989 ORTHO05D004626 1.3e-20 103.2 145 40.0
ATR0736G179 Amborella trichopoda HOM05D003989 ORTHO05D004626 1.7e-20 102.8 145 40.0
Aqoxy5G00222 Aquilegia oxysepala HOM05D003989 ORTHO05D004626 1.7e-20 102.8 146 39.7
arahy.Tifrunner.gnm1.ann1.CXB6W4 Arachis hypogaea HOM05D003989 ORTHO05D004626 2.2e-20 102.4 147 39.5
MSTRG.17493 Avicennia marina HOM05D003989 ORTHO05D004626 2.2e-20 102.4 141 41.1
Lj2A1151T33 Lonicera japonica HOM05D003989 ORTHO05D004626 2.2e-20 102.4 146 41.1
Eucgr.K03258 Eucalyptus grandis HOM05D003989 ORTHO05D004626 2.8e-20 102.1 146 39.7
DCAR_018490 Daucus carota HOM05D003989 ORTHO05D004626 1.1e-19 100.1 148 37.8
Sabra02G0030600 Salix brachista HOM05D003989 ORTHO05D004626 1.1e-19 100.1 169 37.3
CSS0015513 Camellia sinensis var. sinensis HOM05D003989 ORTHO05D004626 1.4e-19 99.8 135 40.7
CiPaw.04G187100 Carya illinoinensis HOM05D003989 ORTHO05D004626 2.4e-19 99.0 147 38.1
CDE04G0232 Ceratophyllum demersum HOM05D003989 ORTHO05D004626 5.4e-19 97.8 146 37.7
Glyma.12G060500 Glycine max HOM05D003989 ORTHO05D004626 5.4e-19 97.8 146 39.0
Medtr1g069870 Medicago truncatula HOM05D003989 ORTHO05D004626 9.2e-19 97.1 146 39.7
ATR0736G119 Amborella trichopoda HOM05D003989 ORTHO05D004626 1.6e-18 96.3 146 39.0
Phvul.007G192500 Phaseolus vulgaris HOM05D003989 ORTHO05D004626 3.5e-18 95.1 146 39.0
Glyma.13G123800 Glycine max HOM05D003989 ORTHO05D004626 4.5e-18 94.7 146 37.7
QL09p039095 Quercus lobata HOM05D003989 ORTHO05D004626 5.9e-18 94.4 122 41.0
SalBow6G3340 Salvia bowleyana HOM05D003989 ORTHO05D004626 7.8e-18 94.0 145 37.2
MSTRG.18323 Avicennia marina HOM05D003989 ORTHO05D004626 2.9e-17 92.0 146 39.0
HPP92_008957 Vanilla planifolia HOM05D003989 ORTHO05D004626 5.0e-17 91.3 145 35.2
AUR62011843 Chenopodium quinoa HOM05D003989 ORTHO05D004626 1.5e-16 89.7 121 39.7
ClCG09G008040 Citrullus lanatus HOM05D003989 ORTHO05D004626 1.9e-16 89.4 124 39.5
Zm00001eb089650 Zea mays HOM05D003989 ORTHO05D004626 1.9e-16 89.4 146 38.4
Pp3c12_14220 Physcomitrium patens HOM05D003989 ORTHO05D004626 1.2e-15 86.7 142 38.0
unitig_22.g5457 Utricularia gibba HOM05D003989 ORTHO05D004626 1.6e-15 86.3 135 36.3
SMO238G0041 Selaginella moellendorffii HOM05D003989 ORTHO05D004626 2.1e-15 85.9 140 32.9
COL.COLO4_04036 Corchorus olitorius HOM05D003989 ORTHO05D004626 6.1e-15 84.3 140 36.4
Oeu025856.1 Olea europaea HOM05D003989 ORTHO05D004626 1.4e-14 83.2 125 38.4
Nitab4.5_0005001g0020 Nicotiana tabacum HOM05D003989 ORTHO05D004626 2.3e-14 82.4 82 53.7
Pp3c3_23160 Physcomitrium patens HOM05D003989 ORTHO05D004626 2.3e-14 82.4 140 35.7
unitig_60.g25751 Utricularia gibba HOM05D003989 ORTHO05D004626 1.2e-13 80.1 135 35.6
Zm00001eb418960 Zea mays HOM05D003989 ORTHO05D004626 1.2e-13 80.1 170 34.1
Mapoly0108s0055 Marchantia polymorpha HOM05D003989 ORTHO05D004626 1.5e-13 79.7 140 32.1
SEGI_09904 Sequoiadendron giganteum HOM05D003989 ORTHO05D004626 1.5e-13 79.7 81 45.7
Gohir.D07G219600 Gossypium hirsutum HOM05D003989 ORTHO05D004626 4.4e-13 78.2 135 37.8
Medtr1g069890 Medicago truncatula HOM05D003989 ORTHO05D004626 4.4e-13 78.2 117 41.9
Gohir.A07G213400 Gossypium hirsutum HOM05D003989 ORTHO05D004626 5.8e-13 77.8 135 37.8
Ciclev10022360m.g Citrus clementina HOM05D003989 ORTHO05D004626 7.5e-13 77.4 124 37.9
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 1.3e-12 76.6 43 86.0
Carub.0007s3141 Capsella rubella HOM05D003989 ORTHO05D004626 1.7e-12 76.3 112 42.0
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 2.2e-12 75.9 83 47.0
Actinidia30162 Actinidia chinensis HOM05D003989 ORTHO05D004626 2.9e-12 75.5 82 48.8
Lalb_Chr06g0170491 Lupinus albus HOM05D003989 ORTHO05D004626 2.9e-12 75.5 83 50.6
AUR62002143 Chenopodium quinoa HOM05D003989 ORTHO05D004626 1.1e-11 73.6 152 30.9
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 1.4e-11 73.2 55 63.6
CBR_g23031 Chara braunii HOM05D003989 ORTHO05D004626 1.4e-11 73.2 149 30.9
Lalb_Chr21g0313881 Lupinus albus HOM05D003989 ORTHO05D004626 1.9e-11 72.8 83 48.2
AUR62015563 Chenopodium quinoa HOM05D003989 ORTHO05D004626 2.4e-11 72.4 152 30.9
PGR044G1132 Punica granatum HOM05D003989 ORTHO05D004626 1.6e-10 69.7 82 43.9
BcaB06g28507 Brassica carinata HOM05D003989 ORTHO05D004626 2.0e-10 69.3 71 53.5
Hund03044 Selenicereus undatus HOM05D003989 ORTHO05D004626 3.0e-09 65.5 141 33.3
EL10Ac3g04998 Beta vulgaris HOM05D003989 ORTHO05D004626 5.0e-09 64.7 152 29.6
AUR62015565 Chenopodium quinoa HOM05D003989 ORTHO05D004626 6.6e-09 64.3 88 44.3
Actinidia09544 Actinidia chinensis HOM05D003989 ORTHO05D004626 1.5e-08 63.2 57 54.4
EL10Ac3g05001 Beta vulgaris HOM05D003989 ORTHO05D004626 1.9e-08 62.8 146 31.5
BolC4t27553H Brassica oleracea HOM05D003989 ORTHO05D004626 3.3e-08 62.0 41 70.7
Ah.13g072470 Amaranthus hybridus HOM05D003989 ORTHO05D004626 4.3e-08 61.6 89 38.2
AagrBONN_evm.TU.Sc2ySwM_228.3815 Anthoceros agrestis HOM05D003989 ORTHO05D004626 2.1e-07 59.3 81 35.8
A04p23940 Brassica napus HOM05D003989 ORTHO05D004626 2.1e-07 59.3 76 50.0
BraA04t17918Z Brassica rapa HOM05D003989 ORTHO05D004626 2.1e-07 59.3 76 50.0


User provided reference genes

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