Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28391 Brassica carinata HOM05D008158 ORTHO05D010323 3.1e-36 155.2 119 100.0
C04p60060 Brassica napus HOM05D008158 ORTHO05D010323 9.6e-30 133.7 119 89.1
BolC4t27509H Brassica oleracea HOM05D008158 ORTHO05D010323 9.6e-30 133.7 119 89.1
BraA04t17885Z Brassica rapa HOM05D008158 ORTHO05D010323 6.2e-29 131.0 128 75.0
A04p23590 Brassica napus HOM05D008158 ORTHO05D010323 4.1e-28 128.3 128 74.2
Thhalv10017460m.g Eutrema salsugineum HOM05D008158 ORTHO05D010323 8.4e-26 120.6 120 75.8
AT2G05530 Arabidopsis thaliana HOM05D008158 ORTHO05D010323 1.8e-20 102.8 119 73.9
AL3G42960 Arabidopsis lyrata HOM05D008158 ORTHO05D010323 2.0e-19 99.4 125 68.8
AL3G42860 Arabidopsis lyrata HOM05D008158 ORTHO05D010323 2.9e-18 95.5 120 69.2
CARHR103210 Cardamine hirsuta HOM05D008158 ORTHO05D010323 3.8e-18 95.1 121 50.4
Sp3g24050 Schrenkiella parvula HOM05D008158 ORTHO05D010323 5.0e-18 94.7 120 68.3
BcaC01g03160 Brassica carinata HOM05D008158 ORTHO05D010323 3.2e-17 92.0 119 60.5
Sp3g24030 Schrenkiella parvula HOM05D008158 ORTHO05D010323 1.2e-16 90.1 123 64.2
A03p44630 Brassica napus HOM05D008158 ORTHO05D010323 2.7e-16 89.0 148 53.4
C03p55460 Brassica napus HOM05D008158 ORTHO05D010323 1.4e-15 86.7 129 62.8
BolC3t17821H Brassica oleracea HOM05D008158 ORTHO05D010323 1.4e-15 86.7 129 62.8
AT2G05380 Arabidopsis thaliana HOM05D008158 ORTHO05D010323 3.0e-15 85.5 121 62.8
Carub.0003s2685 Capsella rubella HOM05D008158 ORTHO05D010323 3.0e-15 85.5 141 66.7
BcaB08g34502 Brassica carinata HOM05D008158 ORTHO05D010323 3.9e-15 85.1 151 56.3
Carub.0003s2686 Capsella rubella HOM05D008158 ORTHO05D010323 6.7e-15 84.3 134 62.7
BraA03t13598Z Brassica rapa HOM05D008158 ORTHO05D010323 8.8e-15 84.0 139 59.7
AT2G05520 Arabidopsis thaliana HOM05D008158 ORTHO05D010323 7.4e-14 80.9 154 55.2
Carub.0003s2679 Capsella rubella HOM05D008158 ORTHO05D010323 1.7e-13 79.7 119 43.7
Sp3g24040 Schrenkiella parvula HOM05D008158 ORTHO05D010323 1.7e-13 79.7 142 59.9
AL3G42950 Arabidopsis lyrata HOM05D008158 ORTHO05D010323 2.2e-13 79.3 156 57.1
BraA10t42972Z Brassica rapa HOM05D008158 ORTHO05D010323 2.2e-13 79.3 121 45.5
A10p08930 Brassica napus HOM05D008158 ORTHO05D010323 1.4e-12 76.6 121 44.6
BraA03t13597Z Brassica rapa HOM05D008158 ORTHO05D010323 1.8e-12 76.3 151 51.0
CARHR103240 Cardamine hirsuta HOM05D008158 ORTHO05D010323 4.1e-12 75.1 119 54.6
BolC9t55330H Brassica oleracea HOM05D008158 ORTHO05D010323 2.0e-11 72.8 123 44.7
THA.LOC104826607 Tarenaya hassleriana HOM05D008158 ORTHO05D010323 3.4e-11 72.0 120 61.7
CARHR103220 Cardamine hirsuta HOM05D008158 ORTHO05D010323 1.0e-10 70.5 121 64.5
Aa31LG1G19090 Aethionema arabicum HOM05D008158 ORTHO05D010323 8.5e-10 67.4 126 60.3
THA.LOC104826606 Tarenaya hassleriana HOM05D008158 ORTHO05D010323 5.5e-09 64.7 122 62.3
C03p55470 Brassica napus HOM05D008158 ORTHO05D010323 7.2e-09 64.3 120 57.5
Thhalv10002728m.g Eutrema salsugineum HOM05D008158 ORTHO05D010323 1.4e-07 60.1 117 65.0
BcaB08g34503 Brassica carinata HOM05D008158 ORTHO05D010323 2.3e-07 59.3 121 58.7
BcaC01g03159 Brassica carinata HOM05D008158 ORTHO05D010323 3.0e-07 58.9 121 58.7
A03p44640 Brassica napus HOM05D008158 ORTHO05D010323 3.0e-07 58.9 121 58.7
Carub.0003s2677 Capsella rubella HOM05D008158 ORTHO05D010323 3.0e-07 58.9 114 41.2
BcaC04g22045 Brassica carinata HOM05D008158 ORTHO05D010323 5.1e-07 58.2 96 41.7
THA.LOC104815348 Tarenaya hassleriana HOM05D008158 ORTHO05D010323 8.8e-07 57.4 117 57.3
EL10Ac9g22778 Beta vulgaris HOM05D008132 ORTHO05D005763 1.5e-06 56.6 121 53.7
AT2G05540 Arabidopsis thaliana HOM05D008158 ORTHO05D010323 2.0e-06 56.2 29 79.3
EL10Ac9g22777 Beta vulgaris HOM05D008132 ORTHO05D005763 2.0e-06 56.2 28 75.0
Solyc09g097790.1 Solanum lycopersicum HOM05D012878 ORTHO05D010323 3.3e-06 55.5 34 67.6
Migut.G01096 Erythranthe guttata HOM05D008132 ORTHO05D005763 5.7e-06 54.7 34 70.6
PGSC0003DMG400031552 Solanum tuberosum HOM05D008132 ORTHO05D005763 9.7e-06 53.9 28 71.4


User provided reference genes

Program Settings