Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28281 Brassica carinata HOM05D004236 ORTHO05D004903 2.0e-71 272.3 134 100.0
C06p39930 Brassica napus HOM05D004236 ORTHO05D004903 1.6e-65 252.7 133 94.7
BcaB03g15254 Brassica carinata HOM05D004236 ORTHO05D004903 2.1e-65 252.3 133 94.7
BcaC08g46105 Brassica carinata HOM05D004236 ORTHO05D004903 4.7e-65 251.1 133 94.0
A07p33520 Brassica napus HOM05D004236 ORTHO05D004903 1.8e-64 249.2 133 94.7
BraA07t30978Z Brassica rapa HOM05D004236 ORTHO05D004903 1.8e-64 249.2 133 94.7
BolC6t39081H Brassica oleracea HOM05D004236 ORTHO05D004903 1.5e-63 246.1 133 94.0
BcaB08g34729 Brassica carinata HOM05D000498 ORTHO05D000354 2.0e-63 245.7 133 91.7
CARHR058730 Cardamine hirsuta HOM05D004236 ORTHO05D004903 5.9e-60 234.2 137 88.3
Aa31LG2G3180 Aethionema arabicum HOM05D004236 ORTHO05D004903 2.2e-59 232.3 134 86.6
THA.LOC104805594 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 2.8e-54 215.3 134 79.9
Thhalv10018777m.g Eutrema salsugineum HOM05D004236 ORTHO05D004903 1.8e-53 212.6 138 80.4
Sp5g21620 Schrenkiella parvula HOM05D004236 ORTHO05D004903 1.2e-52 209.9 137 80.3
AT1G66680 Arabidopsis thaliana HOM05D004236 ORTHO05D004903 3.5e-52 208.4 140 80.0
Carub.0002s1288 Capsella rubella HOM05D004236 ORTHO05D004903 5.9e-52 207.6 139 79.9
AL2G24640 Arabidopsis lyrata HOM05D004236 ORTHO05D004903 2.2e-51 205.7 140 79.3
Cpa.g.sc116.5 Carica papaya HOM05D004236 ORTHO05D004903 3.6e-49 198.4 134 74.6
Psat3g096800 Pisum sativum HOM05D004236 ORTHO05D004903 8.0e-49 197.2 133 72.9
TPR.G28393 Trifolium pratense HOM05D004236 ORTHO05D004903 8.0e-49 197.2 133 73.7
Ciclev10012115m.g Citrus clementina HOM05D004236 ORTHO05D004903 3.0e-48 195.3 135 72.6
Phvul.008G009300 Phaseolus vulgaris HOM05D004236 ORTHO05D004903 5.2e-48 194.5 133 72.2
Cc07_g08360 Coffea canephora HOM05D004236 ORTHO05D004903 6.8e-48 194.1 133 72.2
Prupe.3G150900 Prunus persica HOM05D004236 ORTHO05D004903 6.8e-48 194.1 133 73.7
arahy.Tifrunner.gnm1.ann1.LVD2NH Arachis hypogaea HOM05D004236 ORTHO05D004903 1.2e-47 193.4 133 74.4
arahy.Tifrunner.gnm1.ann1.UY7CFX Arachis hypogaea HOM05D004236 ORTHO05D004903 1.2e-47 193.4 133 74.4
Dinv33978 Davidia involucrata HOM05D004236 ORTHO05D004903 1.2e-47 193.4 133 72.2
Glyma.02G090500 Glycine max HOM05D004236 ORTHO05D004903 1.5e-47 193.0 133 71.4
Lj1g0012263 Lotus japonicus HOM05D004236 ORTHO05D004903 2.0e-47 192.6 133 72.9
Manes.01G114300 Manihot esculenta HOM05D004236 ORTHO05D004903 2.0e-47 192.6 133 72.2
Medtr7g082910 Medicago truncatula HOM05D004236 ORTHO05D004903 2.0e-47 192.6 133 72.9
CSS0029696 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 2.6e-47 192.2 133 72.9
CANSAT80G2204 Cannabis sativa HOM05D004236 ORTHO05D004903 2.6e-47 192.2 134 73.1
Lalb_Chr04g0257721 Lupinus albus HOM05D004236 ORTHO05D004903 2.6e-47 192.2 133 70.7
MD09G1258900 Malus domestica HOM05D004236 ORTHO05D004903 4.4e-47 191.4 133 72.9
RcHm_v2.0_Chr3g0493661 Rosa chinensis HOM05D004236 ORTHO05D004903 4.4e-47 191.4 133 72.9
TWI53G1957 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 5.7e-47 191.0 135 68.9
VMungo1383G0222 Vigna mungo HOM05D004236 ORTHO05D004903 9.8e-47 190.3 133 72.2
Ca_08100_v3 Cicer arietinum L. HOM05D004236 ORTHO05D004903 1.7e-46 189.5 133 70.7
Eucgr.J01534 Eucalyptus grandis HOM05D004236 ORTHO05D004903 1.7e-46 189.5 135 72.6
Glyma.18G292800 Glycine max HOM05D004236 ORTHO05D004903 1.7e-46 189.5 133 70.7
Dinv14861 Davidia involucrata HOM05D004236 ORTHO05D004903 2.8e-46 188.7 133 70.7
Atru.chr1.1563 Acer truncatum HOM05D004236 ORTHO05D004903 4.9e-46 188.0 135 70.4
Dinv23330 Davidia involucrata HOM05D004236 ORTHO05D004903 4.9e-46 188.0 133 69.9
FAN23G2326 Fragaria x ananassa HOM05D004236 ORTHO05D004903 6.3e-46 187.6 133 71.4
FAN26G2772 Fragaria x ananassa HOM05D004236 ORTHO05D004903 6.3e-46 187.6 133 71.4
COL.COLO4_27143 Corchorus olitorius HOM05D004236 ORTHO05D004903 1.1e-45 186.8 139 71.9
FvH4_1g29040 Fragaria vesca HOM05D004236 ORTHO05D004903 1.1e-45 186.8 133 71.4
FAN19G1079 Fragaria x ananassa HOM05D004236 ORTHO05D004903 1.1e-45 186.8 133 71.4
GSVIVG01030921001 Vitis vinifera HOM05D004236 ORTHO05D004903 1.1e-45 186.8 133 72.2
SalBow3G2011 Salvia bowleyana HOM05D004236 ORTHO05D004903 1.8e-45 186.0 133 70.7
SalBow3G4331 Salvia bowleyana HOM05D004236 ORTHO05D004903 1.8e-45 186.0 133 70.7
DCAR_010720 Daucus carota HOM05D004236 ORTHO05D004903 2.4e-45 185.7 133 69.9
Lsat_1_v5_gn_4_156001 Lactuca sativa HOM05D004236 ORTHO05D004903 3.1e-45 185.3 133 69.2
Lj4A180T59 Lonicera japonica HOM05D004236 ORTHO05D004903 4.1e-45 184.9 133 71.4
Thecc.04G125200 Theobroma cacao HOM05D004236 ORTHO05D004903 4.1e-45 184.9 140 70.7
Hma1.2p1_0500F.1_g166960 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 5.4e-45 184.5 133 69.2
Lsat_1_v5_gn_2_81141 Lactuca sativa HOM05D004236 ORTHO05D004903 7.0e-45 184.1 133 71.4
MD17G1253400 Malus domestica HOM05D004236 ORTHO05D004903 7.0e-45 184.1 133 69.9
Peaxi162Scf00104g01815 Petunia axillaris HOM05D004236 ORTHO05D004903 7.0e-45 184.1 133 69.2
PGR042G2451 Punica granatum HOM05D004236 ORTHO05D004903 7.0e-45 184.1 135 72.6
Duzib133G1178 Durio zibethinus HOM05D004236 ORTHO05D004903 9.1e-45 183.7 138 68.8
Nn1g02732 Nelumbo nucifera HOM05D004236 ORTHO05D004903 9.1e-45 183.7 133 68.4
CiPaw.03G066200 Carya illinoinensis HOM05D004236 ORTHO05D004903 1.6e-44 183.0 134 69.4
Duzib138G1869 Durio zibethinus HOM05D004236 ORTHO05D004903 1.6e-44 183.0 138 69.6
Oeu047429.3 Olea europaea HOM05D004236 ORTHO05D004903 2.0e-44 182.6 134 70.9
HanXRQChr09g0262441 Helianthus annuus HOM05D004236 ORTHO05D004903 2.7e-44 182.2 133 70.7
CSS0010670 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 4.5e-44 181.4 133 68.4
CSS0025273 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 4.5e-44 181.4 133 68.4
Migut.H00256 Erythranthe guttata HOM05D004236 ORTHO05D004903 4.5e-44 181.4 133 69.9
Rhsim08G0084400 Rhododendron simsii HOM05D004236 ORTHO05D004903 4.5e-44 181.4 133 67.7
ATR0326G065 Amborella trichopoda HOM05D004236 ORTHO05D004903 5.9e-44 181.0 133 67.7
PGSC0003DMG400016698 Solanum tuberosum HOM05D004236 ORTHO05D004903 7.7e-44 180.6 133 67.7
TAR622G0693 Trochodendron aralioides HOM05D004236 ORTHO05D004903 7.7e-44 180.6 133 66.9
TAR629G1587 Trochodendron aralioides HOM05D004236 ORTHO05D004903 7.7e-44 180.6 133 66.2
Nn4g24056 Nelumbo nucifera HOM05D004236 ORTHO05D004903 1.0e-43 180.3 134 67.9
Actinidia17648 Actinidia chinensis HOM05D004236 ORTHO05D004903 1.3e-43 179.9 123 70.7
MBI16_g21181_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 2.9e-43 178.7 133 66.2
Hund13695 Selenicereus undatus HOM05D004236 ORTHO05D004903 2.9e-43 178.7 138 65.2
THA.LOC104822507 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 2.9e-43 178.7 117 79.5
Potri.015G062400 Populus trichocarpa HOM05D004236 ORTHO05D004903 3.8e-43 178.3 134 70.1
EL10Ac2g04514 Beta vulgaris HOM05D004236 ORTHO05D004903 5.0e-43 177.9 137 66.4
ClCG05G010730 Citrullus lanatus HOM05D004236 ORTHO05D004903 5.0e-43 177.9 135 68.9
Nn3g18026 Nelumbo nucifera HOM05D004236 ORTHO05D004903 6.6e-43 177.6 133 66.2
Aqoxy3G00154 Aquilegia oxysepala HOM05D004236 ORTHO05D004903 8.6e-43 177.2 133 68.4
Lsat_1_v5_gn_4_15520 Lactuca sativa HOM05D004236 ORTHO05D004903 8.6e-43 177.2 135 69.6
MELO3C020314.2 Cucumis melo HOM05D004236 ORTHO05D004903 1.1e-42 176.8 135 68.1
ECA232G1241 Erigeron canadensis HOM05D004236 ORTHO05D004903 1.1e-42 176.8 136 66.9
AUR62023259 Chenopodium quinoa HOM05D004236 ORTHO05D004903 1.5e-42 176.4 137 65.7
ECA238G4753 Erigeron canadensis HOM05D004236 ORTHO05D004903 1.5e-42 176.4 131 67.9
Rhsim10G0077900 Rhododendron simsii HOM05D004236 ORTHO05D004903 1.9e-42 176.0 133 66.9
CAN.G11.35 Capsicum annuum HOM05D004236 ORTHO05D004903 5.6e-42 174.5 133 64.7
CiPaw.04G044800 Carya illinoinensis HOM05D004236 ORTHO05D004903 5.6e-42 174.5 134 67.2
Sed0018742 Sechium edule HOM05D004236 ORTHO05D004903 7.2e-42 174.1 135 66.7
Gohir.A11G167000 Gossypium hirsutum HOM05D004236 ORTHO05D004903 1.2e-41 173.3 139 67.6
Sopen02g035820 Solanum pennellii HOM05D004236 ORTHO05D004903 1.2e-41 173.3 133 67.7
Gohir.D11G173300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 1.6e-41 172.9 140 67.9
Gorai.007G185600 Gossypium raimondii HOM05D004236 ORTHO05D004903 1.6e-41 172.9 140 67.9
PGSC0003DMG400030596 Solanum tuberosum HOM05D004236 ORTHO05D004903 2.1e-41 172.6 133 67.7
Solyc02g091190.4 Solanum lycopersicum HOM05D004236 ORTHO05D004903 6.1e-41 171.0 133 66.9
Peaxi162Scf00803g00219 Petunia axillaris HOM05D004236 ORTHO05D004903 2.3e-40 169.1 133 65.4
SGA_v2.0_scaffold202G41491 Striga asiatica HOM05D004236 ORTHO05D004903 3.0e-40 168.7 133 65.4
PSO017G0657 Papaver somniferum HOM05D004236 ORTHO05D004903 5.2e-40 167.9 133 62.4
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 6.8e-40 167.5 133 63.2
PSO478G1960 Papaver somniferum HOM05D004236 ORTHO05D004903 8.9e-40 167.2 133 62.4
Sc11g0008520 Simmondsia chinensis HOM05D004236 ORTHO05D004903 8.9e-40 167.2 139 65.5
DCAR_021451 Daucus carota HOM05D004236 ORTHO05D004903 1.2e-39 166.8 131 69.5
vmacro05491 Vaccinium macrocarpon HOM05D004236 ORTHO05D004903 1.2e-39 166.8 149 59.1
Nitab4.5_0002456g0050 Nicotiana tabacum HOM05D004236 ORTHO05D004903 2.6e-39 165.6 133 64.7
Sopen03g007300 Solanum pennellii HOM05D004236 ORTHO05D004903 4.9e-38 161.4 126 65.9
AUR62023213 Chenopodium quinoa HOM05D004236 ORTHO05D004903 6.4e-38 161.0 162 54.9
Ah.16g101430 Amaranthus hybridus HOM05D004236 ORTHO05D004903 1.8e-37 159.5 137 65.0
GSVIVG01011790001 Vitis vinifera HOM05D004236 ORTHO05D004903 5.4e-37 157.9 134 62.7
Gohir.D07G079800 Gossypium hirsutum HOM05D004236 ORTHO05D004903 3.5e-36 155.2 138 58.7
Gorai.001G084600 Gossypium raimondii HOM05D004236 ORTHO05D004903 3.5e-36 155.2 138 58.7
CAN.G625.68 Capsicum annuum HOM05D004236 ORTHO05D004903 4.6e-36 154.8 102 74.5
Zm00001eb156450 Zea mays HOM05D004236 ORTHO05D004903 1.7e-35 152.9 151 58.3
Gohir.A07G075300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 2.3e-35 152.5 138 58.0
Mapoly0105s0009 Marchantia polymorpha HOM05D004236 ORTHO05D004903 2.3e-35 152.5 133 60.9
Lalb_Chr17g0336021 Lupinus albus HOM05D004236 ORTHO05D004903 2.9e-35 152.1 133 59.4
Oeu048228.1 Olea europaea HOM05D004236 ORTHO05D004903 2.9e-35 152.1 117 65.0
Solyc03g034415.1 Solanum lycopersicum HOM05D004236 ORTHO05D004903 5.0e-35 151.4 115 65.2
Sed0017902 Sechium edule HOM05D004236 ORTHO05D004903 1.5e-34 149.8 120 65.8
BcaB01g01715 Brassica carinata HOM05D004236 ORTHO05D004903 9.5e-34 147.1 83 92.8
CDE04G0933 Ceratophyllum demersum HOM05D004236 ORTHO05D004903 8.0e-33 144.1 134 56.7
Lj2A437T35 Lonicera japonica HOM05D004236 ORTHO05D004903 8.0e-33 144.1 211 44.5
MBI10_g41074_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 2.6e-31 139.0 116 56.0
Pp3c15_25630 Physcomitrium patens HOM05D004236 ORTHO05D004903 5.8e-31 137.9 136 54.4
HPP92_027367 Vanilla planifolia HOM05D000680 ORTHO05D000738 8.6e-27 124.0 135 50.4
Zm00001eb334840 Zea mays HOM05D004236 ORTHO05D004903 4.3e-26 121.7 153 47.7
Nitab4.5_0005700g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 4.7e-25 118.2 133 49.6
Os01g0121100 Oryza sativa ssp. japonica HOM05D004236 ORTHO05D004903 3.4e-23 112.1 165 43.0
SMO340G0155 Selaginella moellendorffii HOM05D004236 ORTHO05D004903 4.3e-18 95.1 107 48.6
HPP92_023117 Vanilla planifolia HOM05D004236 ORTHO05D004903 9.5e-18 94.0 117 46.2
THA.LOC104822473 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 1.2e-17 93.6 45 88.9
CsaV3_3G017790 Cucumis sativus L. HOM05D004236 ORTHO05D004903 1.6e-17 93.2 54 74.1
TWI77G0072 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 1.8e-16 89.7 76 60.5
CBR_g26148 Chara braunii HOM05D004236 ORTHO05D004903 8.9e-16 87.4 102 48.0
Nitab4.5_0000625g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 5.8e-15 84.7 133 42.9
Nitab4.5_0000901g0080 Nicotiana tabacum HOM05D004236 ORTHO05D000001 4.9e-14 81.6 80 57.5
Nitab4.5_0000901g0060 Nicotiana tabacum HOM05D004236 ORTHO05D004903 3.2e-13 79.0 72 62.5
Potri.012G068550 Populus trichocarpa HOM05D004236 ORTHO05D004903 4.6e-12 75.1 82 59.8
Actinidia13574 Actinidia chinensis HOM05D004236 ORTHO05D004903 1.9e-10 69.7 77 54.5
SHI07812 Sapria himalayana HOM05D004236 ORTHO05D004903 8.9e-08 60.8 65 53.8
SHI07811 Sapria himalayana HOM05D004236 ORTHO05D004903 4.9e-06 55.1 43 55.8
Lsat_1_v5_gn_0_260 Lactuca sativa HOM05D004236 ORTHO05D004903 8.4e-06 54.3 44 59.1
Lsat_1_v5_gn_0_31400 Lactuca sativa HOM05D004236 ORTHO05D004903 8.4e-06 54.3 44 59.1
Lsat_1_v5_gn_3_124540 Lactuca sativa HOM05D004236 ORTHO05D004903 8.4e-06 54.3 44 59.1
Lsat_1_v5_gn_3_86660 Lactuca sativa HOM05D004236 ORTHO05D004903 8.4e-06 54.3 44 59.1


User provided reference genes

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