Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28232 Brassica carinata HOM05D006319 ORTHO05D007963 2.2e-129 465.7 242 100.0
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 1.5e-114 416.4 237 92.4
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 1.3e-113 413.3 238 92.9
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 1.3e-113 413.3 238 92.9
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 1.3e-113 413.3 236 91.9
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 6.4e-113 411.0 238 92.4
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 4.0e-107 391.7 242 86.4
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 1.3e-105 386.7 243 86.0
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 2.2e-105 386.0 241 85.5
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 5.4e-104 381.3 239 85.8
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 2.5e-101 372.5 239 84.9
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 2.9e-97 359.0 243 79.8
Carub.0004s0957 Capsella rubella HOM05D006319 ORTHO05D007963 1.0e-94 350.5 243 80.7
CARHR121630 Cardamine hirsuta HOM05D006319 ORTHO05D007963 7.3e-93 344.4 243 78.6
AL4G23100 Arabidopsis lyrata HOM05D006319 ORTHO05D007963 2.1e-92 342.8 244 79.1
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 4.9e-89 331.6 241 75.1
AT2G28605 Arabidopsis thaliana HOM05D006319 ORTHO05D007963 1.4e-88 330.1 237 76.8
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 1.4e-88 330.1 188 89.9
BolC3t15489H Brassica oleracea HOM05D006319 ORTHO05D007963 1.2e-74 283.9 164 88.4
THA.LOC104826346 Tarenaya hassleriana HOM05D006319 ORTHO05D007963 8.7e-70 267.7 242 62.0
Eucgr.H05122 Eucalyptus grandis HOM05D006319 ORTHO05D007963 1.3e-68 263.8 238 60.9
Thecc.01G138200 Theobroma cacao HOM05D006319 ORTHO05D007963 8.1e-68 261.2 194 67.5
QL10p041175 Quercus lobata HOM05D006319 ORTHO05D007963 1.3e-65 253.8 234 59.4
CSS0021790 Camellia sinensis var. sinensis HOM05D006319 ORTHO05D007963 2.2e-65 253.1 229 59.0
Glyma.06G156100 Glycine max HOM05D006319 ORTHO05D007963 2.2e-65 253.1 223 60.5
Atru.chr4.1000 Acer truncatum HOM05D006319 ORTHO05D007963 3.8e-65 252.3 192 67.2
Potri.007G100800 Populus trichocarpa HOM05D006319 ORTHO05D007963 4.9e-65 251.9 190 66.8
Prupe.4G276300 Prunus persica HOM05D006319 ORTHO05D007963 6.5e-65 251.5 233 60.5
Duzib187G0662 Durio zibethinus HOM05D006319 ORTHO05D007963 8.4e-65 251.1 220 60.5
GSVIVG01022331001 Vitis vinifera HOM05D006319 ORTHO05D007963 8.4e-65 251.1 191 66.0
CiPaw.04G079200 Carya illinoinensis HOM05D006319 ORTHO05D007963 1.1e-64 250.8 191 69.1
Medtr3g096750 Medicago truncatula HOM05D006319 ORTHO05D007963 1.1e-64 250.8 220 60.9
Dinv05221 Davidia involucrata HOM05D006319 ORTHO05D007963 2.5e-64 249.6 233 59.7
Manes.12G159300 Manihot esculenta HOM05D006319 ORTHO05D007963 3.2e-64 249.2 187 68.4
CsaV3_2G019570 Cucumis sativus L. HOM05D006319 ORTHO05D007963 4.2e-64 248.8 189 66.1
Hma1.2p1_0236F.1_g099250 Hydrangea macrophylla HOM05D006319 ORTHO05D007963 9.3e-64 247.7 202 64.9
Gorai.011G118400 Gossypium raimondii HOM05D006319 ORTHO05D007963 1.2e-63 247.3 194 66.0
ClCG02G000280 Citrullus lanatus HOM05D005757 ORTHO05D007090 2.1e-63 246.5 195 65.1
MELO3C023216.2 Cucumis melo HOM05D006319 ORTHO05D007963 2.1e-63 246.5 197 63.5
Ciclev10002322m.g Citrus clementina HOM05D006319 ORTHO05D007963 3.5e-63 245.7 230 58.3
Aqoxy6G00315 Aquilegia oxysepala HOM05D006319 ORTHO05D007963 4.6e-63 245.4 233 59.7
Psat5g060360 Pisum sativum HOM05D006319 ORTHO05D007963 4.6e-63 245.4 221 60.6
CANSAT01G1475 Cannabis sativa HOM05D006319 ORTHO05D007963 1.0e-62 244.2 191 67.5
COL.COLO4_35821 Corchorus olitorius HOM05D006319 ORTHO05D007963 1.0e-62 244.2 183 67.8
QL10p041464 Quercus lobata HOM05D006319 ORTHO05D007963 1.0e-62 244.2 170 71.2
Cpa.g.sc37.12 Carica papaya HOM05D006319 ORTHO05D007963 1.3e-62 243.8 240 56.7
Nn1g08971 Nelumbo nucifera HOM05D006319 ORTHO05D007963 1.8e-62 243.4 193 64.2
MBI06_g35206_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 3.0e-62 242.7 229 59.4
RcHm_v2.0_Chr2g0122611 Rosa chinensis HOM05D006319 ORTHO05D007963 8.7e-62 241.1 214 61.7
VMungo0464G0362 Vigna mungo HOM05D006319 ORTHO05D007963 8.7e-62 241.1 240 55.8
Phvul.009G154200 Phaseolus vulgaris HOM05D006319 ORTHO05D007963 1.1e-61 240.7 210 59.5
SalBow1G4836 Salvia bowleyana HOM05D006319 ORTHO05D007963 1.5e-61 240.4 183 67.8
Oeu011026.1 Olea europaea HOM05D006319 ORTHO05D007963 3.3e-61 239.2 232 57.8
arahy.Tifrunner.gnm1.ann1.7TU5G5 Arachis hypogaea HOM05D006319 ORTHO05D007963 4.3e-61 238.8 191 62.8
EL10Ac4g09632 Beta vulgaris HOM05D006319 ORTHO05D007963 5.7e-61 238.4 226 58.4
Glyma.04G209900 Glycine max HOM05D006319 ORTHO05D007963 5.7e-61 238.4 190 64.7
TWI31G0926 Tripterygium wilfordii HOM05D006319 ORTHO05D007963 5.7e-61 238.4 245 56.3
vmacro18688 Vaccinium macrocarpon HOM05D006319 ORTHO05D007963 5.7e-61 238.4 190 64.2
Actinidia16521 Actinidia chinensis HOM05D006319 ORTHO05D007963 7.4e-61 238.0 236 56.4
MD01G1000300 Malus domestica HOM05D006319 ORTHO05D007963 7.4e-61 238.0 191 62.8
PGR102G0633 Punica granatum HOM05D006319 ORTHO05D007963 9.6e-61 237.7 232 57.3
FAN23G2801 Fragaria x ananassa HOM05D006319 ORTHO05D007963 1.3e-60 237.3 209 60.8
Sc02g0003550 Simmondsia chinensis HOM05D006319 ORTHO05D007963 1.3e-60 237.3 239 55.2
FvH4_1g24980 Fragaria vesca HOM05D006319 ORTHO05D007963 1.6e-60 236.9 212 61.3
arahy.Tifrunner.gnm1.ann1.4SM61H Arachis hypogaea HOM05D006319 ORTHO05D007963 2.1e-60 236.5 225 56.0
Lj7A582T32 Lonicera japonica HOM05D006319 ORTHO05D007963 2.8e-60 236.1 157 72.6
Migut.H00824 Erythranthe guttata HOM05D006319 ORTHO05D007963 6.2e-60 235.0 188 65.4
Cc02_g33910 Coffea canephora HOM05D006319 ORTHO05D007963 8.2e-60 234.6 229 56.8
AUR62000524 Chenopodium quinoa HOM05D006319 ORTHO05D007963 1.1e-59 234.2 201 60.7
AUR62006869 Chenopodium quinoa HOM05D006319 ORTHO05D007963 1.4e-59 233.8 204 60.3
DCAR_009594 Daucus carota HOM05D006319 ORTHO05D007963 1.4e-59 233.8 159 71.7
Lj1g0009956 Lotus japonicus HOM05D006319 ORTHO05D007963 2.4e-59 233.0 232 59.1
Hund07232 Selenicereus undatus HOM05D006319 ORTHO05D007963 4.1e-59 232.3 196 61.7
arahy.Tifrunner.gnm1.ann1.B4AV5R Arachis hypogaea HOM05D006319 ORTHO05D007963 5.3e-59 231.9 225 55.1
arahy.Tifrunner.gnm1.ann1.P5PFFU Arachis hypogaea HOM05D006319 ORTHO05D007963 5.3e-59 231.9 225 56.0
MSTRG.23490 Avicennia marina HOM05D006319 ORTHO05D007963 6.9e-59 231.5 239 54.8
Lalb_Chr08g0238171 Lupinus albus HOM05D006319 ORTHO05D007963 2.6e-58 229.6 233 53.6
Nitab4.5_0004105g0090 Nicotiana tabacum HOM05D006319 ORTHO05D007963 2.6e-58 229.6 193 62.7
Sopen04g004550 Solanum pennellii HOM05D006319 ORTHO05D007963 3.4e-58 229.2 191 63.9
Solyc04g009420.3 Solanum lycopersicum HOM05D006319 ORTHO05D007963 4.5e-58 228.8 190 64.2
FAN19G2853 Fragaria x ananassa HOM05D006319 ORTHO05D007963 5.8e-58 228.4 227 57.3
PGSC0003DMG400032538 Solanum tuberosum HOM05D006319 ORTHO05D007963 5.8e-58 228.4 224 57.6
FAN28G2219 Fragaria x ananassa HOM05D006319 ORTHO05D007963 1.7e-57 226.9 226 56.6
Ah.06g191080 Amaranthus hybridus HOM05D006319 ORTHO05D007963 5.0e-57 225.3 246 51.6
Nitab4.5_0013462g0010 Nicotiana tabacum HOM05D006319 ORTHO05D007963 6.5e-57 224.9 237 54.4
TAR628G0979 Trochodendron aralioides HOM05D006319 ORTHO05D007963 1.1e-56 224.2 264 49.6
SGA_v2.0_scaffold273G46467 Striga asiatica HOM05D006319 ORTHO05D007963 2.5e-56 223.0 229 53.3
unitig_899.g15151 Utricularia gibba HOM05D006319 ORTHO05D007963 5.5e-56 221.9 227 53.7
CAN.G186.2 Capsicum annuum HOM05D006319 ORTHO05D007963 2.1e-55 219.9 227 55.1
ECA246G1987 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.1e-55 219.9 157 67.5
Eucgr.H02106 Eucalyptus grandis HOM05D006319 ORTHO05D007963 2.7e-55 219.5 233 56.7
PSO782G1065 Papaver somniferum HOM05D006319 ORTHO05D007963 1.3e-54 217.2 153 68.6
Zm00001eb422700 Zea mays HOM05D006319 ORTHO05D007963 1.3e-54 217.2 165 64.8
ATR0584G200 Amborella trichopoda HOM05D006319 ORTHO05D007963 3.9e-54 215.7 156 69.9
CDE08G0565 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 5.1e-54 215.3 193 58.0
HanXRQChr12g0378071 Helianthus annuus HOM05D006319 ORTHO05D007963 6.3e-52 208.4 225 54.7
HPP92_009279 Vanilla planifolia HOM05D006319 ORTHO05D007963 5.9e-50 201.8 156 64.7
Peaxi162Scf00842g00214 Petunia axillaris HOM05D006319 ORTHO05D007963 4.2e-48 195.7 139 70.5
arahy.Tifrunner.gnm1.ann1.E0QW5U Arachis hypogaea HOM05D006319 ORTHO05D007963 1.1e-45 187.6 191 53.4
SEGI_06099 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 3.3e-45 186.0 156 59.0
SEGI_37383 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 9.7e-45 184.5 154 59.1
arahy.Tifrunner.gnm1.ann1.GQG991 Arachis hypogaea HOM05D006319 ORTHO05D007963 2.2e-44 183.3 155 60.6
Lsat_1_v5_gn_5_34560 Lactuca sativa HOM05D006319 ORTHO05D007963 1.7e-41 173.7 156 59.0
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 5.0e-41 172.2 184 50.0
Potri.005G068500 Populus trichocarpa HOM05D006319 ORTHO05D007963 8.5e-41 171.4 245 44.5
AagrBONN_evm.TU.Sc2ySwM_228.2950 Anthoceros agrestis HOM05D006319 ORTHO05D007963 1.6e-39 167.2 155 53.5
Pp3c8_18060 Physcomitrium patens HOM05D006319 ORTHO05D007963 2.3e-38 163.3 156 55.8
Gohir.D10G108000 Gossypium hirsutum HOM05D006319 ORTHO05D007963 1.6e-34 150.6 194 46.4
Gohir.A10G068160 Gossypium hirsutum HOM05D006319 ORTHO05D007963 6.5e-33 145.2 194 44.8
SMO117G0258 Selaginella moellendorffii HOM05D006319 ORTHO05D007963 1.4e-30 137.5 153 45.8
Ca_16986_v3 Cicer arietinum L. HOM05D001650 ORTHO05D001592 4.4e-29 132.5 91 69.2
TPR.G10777 Trifolium pratense HOM05D006319 ORTHO05D007963 5.7e-29 132.1 82 75.6
Mapoly0092s0018 Marchantia polymorpha HOM05D006319 ORTHO05D007963 7.5e-29 131.7 156 45.5
CBR_g49982 Chara braunii HOM05D006319 ORTHO05D007963 4.8e-28 129.0 167 41.9
FAN23G0464 Fragaria x ananassa HOM05D006319 ORTHO05D007963 4.5e-26 122.5 82 72.0
Cre16.g678851 Chlamydomonas reinhardtii HOM05D006319 ORTHO05D007963 6.5e-25 118.6 159 42.1
arahy.Tifrunner.gnm1.ann1.Q7YENP Arachis hypogaea HOM05D006319 ORTHO05D007963 1.9e-24 117.1 143 46.9
FAN26G1803 Fragaria x ananassa HOM05D001650 ORTHO05D001592 3.6e-23 112.8 80 66.2
arahy.Tifrunner.gnm1.ann1.PNID9I Arachis hypogaea HOM05D006319 ORTHO05D007963 6.1e-23 112.1 143 46.9
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 8.0e-23 111.7 119 52.1
TPR.G33590 Trifolium pratense HOM05D001650 ORTHO05D001592 1.0e-22 111.3 150 45.3
Manes.12G147800 Manihot esculenta HOM05D006319 ORTHO05D007963 2.3e-22 110.2 155 49.0
arahy.Tifrunner.gnm1.ann1.949H7S Arachis hypogaea HOM05D006319 ORTHO05D007963 5.7e-21 105.5 143 43.4
Os04g0434900 Oryza sativa ssp. japonica HOM05D006319 ORTHO05D007963 2.0e-18 97.1 69 65.2
arahy.Tifrunner.gnm1.ann1.RE08FE Arachis hypogaea HOM05D006319 ORTHO05D007963 1.6e-15 87.4 125 41.6
MCO01G211 Micromonas commoda HOM05D006319 ORTHO05D007963 4.0e-14 82.8 133 39.8
CDE08G0611 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 2.8e-12 76.6 57 66.7
MBI11_g02539_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 7.0e-11 72.0 104 46.2
PRCOL_00004434 Prasinoderma coloniale HOM05D006319 ORTHO05D007963 1.2e-10 71.2 105 40.0
MBI17_g01556_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 1.6e-10 70.9 103 41.7
arahy.Tifrunner.gnm1.ann1.I50TU7 Arachis hypogaea HOM05D006319 ORTHO05D007963 4.5e-10 69.3 97 40.2
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 1.2e-07 61.2 147 27.2
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 4.0e-06 56.2 145 25.5
Atru.chr12.543 Acer truncatum HOM05D002933 ORTHO05D007742 8.9e-06 55.1 135 26.7


User provided reference genes

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