Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28229 Brassica carinata HOM05D006265 ORTHO05D007822 2.0e-29 131.7 64 100.0
A06p39550 Brassica napus HOM05D006265 ORTHO05D007822 1.8e-22 108.6 64 89.1
BraA06t26870Z Brassica rapa HOM05D006265 ORTHO05D007822 1.8e-22 108.6 64 89.1
C07p38720 Brassica napus HOM05D006265 ORTHO05D007822 3.0e-22 107.8 62 87.1
BolC7t44392H Brassica oleracea HOM05D006265 ORTHO05D007822 3.0e-22 107.8 62 87.1
Sp2g18310 Schrenkiella parvula HOM05D006265 ORTHO05D007822 9.2e-19 96.3 62 80.6
Thhalv10003817m.g Eutrema salsugineum HOM05D006265 ORTHO05D007822 1.6e-18 95.5 63 79.4
Aa31sc13G30 Aethionema arabicum HOM05D006265 ORTHO05D007822 1.3e-17 92.4 65 73.8
Carub.0005s0594 Capsella rubella HOM05D006265 ORTHO05D007822 1.7e-17 92.0 65 73.8
AT3G32940 Arabidopsis thaliana HOM05D006265 ORTHO05D007822 2.1e-15 85.1 65 72.3
AL5G20540 Arabidopsis lyrata HOM05D006265 ORTHO05D007822 3.1e-14 81.3 66 71.2
CARHR153580 Cardamine hirsuta HOM05D006265 ORTHO05D007822 3.1e-14 81.3 60 71.7
Cfa009611 Carpinus fangiana HOM05D006265 ORTHO05D007822 3.1e-14 81.3 65 66.2
Haze_22984 Corylus avellana HOM05D006265 ORTHO05D007822 3.1e-14 81.3 65 66.2
PGR042G3578 Punica granatum HOM05D006265 ORTHO05D007822 4.0e-14 80.9 65 64.6
CSS0049900 Camellia sinensis var. sinensis HOM05D006265 ORTHO05D007822 5.2e-14 80.5 65 64.6
Dinv09750 Davidia involucrata HOM05D006265 ORTHO05D007822 6.8e-14 80.1 66 63.6
Potri.003G216800 Populus trichocarpa HOM05D006265 ORTHO05D007822 8.9e-14 79.7 65 63.1
Sabra03G0161900 Salix brachista HOM05D006265 ORTHO05D007822 1.2e-13 79.3 65 63.1
Actinidia39362 Actinidia chinensis HOM05D006265 ORTHO05D007822 9.8e-13 76.3 65 60.0
CANSAT80G0616 Cannabis sativa HOM05D006265 ORTHO05D007822 9.8e-13 76.3 65 64.6
Oeu023936.1 Olea europaea HOM05D006265 ORTHO05D007822 9.8e-13 76.3 64 60.9
GSVIVG01025406001 Vitis vinifera HOM05D006265 ORTHO05D007822 9.8e-13 76.3 64 62.5
SHI02888 Sapria himalayana HOM05D006265 ORTHO05D007822 1.3e-12 75.9 63 63.5
THA.LOC104811062 Tarenaya hassleriana HOM05D006265 ORTHO05D007822 1.3e-12 75.9 67 65.7
Cpa.g.sc1833.3 Carica papaya HOM05D006265 ORTHO05D007822 1.7e-12 75.5 67 61.2
Lj2C715T2 Lonicera japonica HOM05D006265 ORTHO05D007822 1.7e-12 75.5 65 61.5
Nitab4.5_0011368g0010 Nicotiana tabacum HOM05D006265 ORTHO05D007822 2.2e-12 75.1 64 57.8
CiPaw.13G173200 Carya illinoinensis HOM05D006265 ORTHO05D007822 2.9e-12 74.7 66 59.1
Lsat_1_v5_gn_6_52400 Lactuca sativa HOM05D006265 ORTHO05D007822 2.9e-12 74.7 63 61.9
Oeu029371.1 Olea europaea HOM05D006265 ORTHO05D007822 3.7e-12 74.3 66 60.6
QL01p007989 Quercus lobata HOM05D006265 ORTHO05D007822 3.7e-12 74.3 63 63.5
Cc01_g01630 Coffea canephora HOM05D006265 ORTHO05D007822 4.9e-12 73.9 67 59.7
HanXRQChr02g0056581 Helianthus annuus HOM05D006265 ORTHO05D007822 4.9e-12 73.9 63 58.7
PGSC0003DMG400032140 Solanum tuberosum HOM05D006265 ORTHO05D007822 6.4e-12 73.6 64 59.4
MELO3C014671.2 Cucumis melo HOM05D006265 ORTHO05D007822 8.3e-12 73.2 58 63.8
CsaV3_4G023450 Cucumis sativus L. HOM05D006265 ORTHO05D007822 8.3e-12 73.2 58 63.8
HPP92_025756 Vanilla planifolia HOM05D006265 ORTHO05D007822 8.3e-12 73.2 67 61.2
Atru.chr3.2261 Acer truncatum HOM05D006265 ORTHO05D007822 1.1e-11 72.8 59 66.1
Atru.chr3.2267 Acer truncatum HOM05D006265 ORTHO05D007822 1.1e-11 72.8 59 66.1
Peaxi162Scf00100g00717 Petunia axillaris HOM05D006265 ORTHO05D007822 1.1e-11 72.8 64 57.8
Rhsim13G0230200 Rhododendron simsii HOM05D006265 ORTHO05D007822 1.1e-11 72.8 65 61.5
Sc16g0012050 Simmondsia chinensis HOM05D006265 ORTHO05D007822 1.1e-11 72.8 65 60.0
Solyc01g006010.3 Solanum lycopersicum HOM05D006265 ORTHO05D007822 1.1e-11 72.8 64 59.4
Sopen01g002020 Solanum pennellii HOM05D006265 ORTHO05D007822 1.1e-11 72.8 64 59.4
MSTRG.18861 Avicennia marina HOM05D006265 ORTHO05D007822 1.9e-11 72.0 65 56.9
COL.COLO4_34991 Corchorus olitorius HOM05D006265 ORTHO05D007822 1.9e-11 72.0 66 54.5
MBI13_g29632_MAGBIO Magnolia biondii HOM05D006265 ORTHO05D007822 1.9e-11 72.0 67 61.2
TWI60G0389 Tripterygium wilfordii HOM05D006265 ORTHO05D007822 1.9e-11 72.0 66 59.1
CAN.G158.5 Capsicum annuum HOM05D006265 ORTHO05D007822 2.4e-11 71.6 64 56.2
ClCG02G023910 Citrullus lanatus HOM05D006265 ORTHO05D007822 2.4e-11 71.6 57 63.2
Duzib168G1214 Durio zibethinus HOM05D006265 ORTHO05D007822 3.2e-11 71.2 65 58.5
Glyma.11G256000 Glycine max HOM05D006265 ORTHO05D007822 3.2e-11 71.2 67 58.2
Eucgr.J01792 Eucalyptus grandis HOM05D006265 ORTHO05D007822 4.1e-11 70.9 68 57.4
Eucgr.L01728 Eucalyptus grandis HOM05D006265 ORTHO05D007822 5.4e-11 70.5 65 58.5
Phvul.001G268200 Phaseolus vulgaris HOM05D006265 ORTHO05D007822 5.4e-11 70.5 65 56.9
SGA_v2.0_scaffold18G08319 Striga asiatica HOM05D006265 ORTHO05D007822 5.4e-11 70.5 64 59.4
TAR623G0845 Trochodendron aralioides HOM05D006265 ORTHO05D007822 7.0e-11 70.1 65 56.9
Manes.15G105700 Manihot esculenta HOM05D006265 ORTHO05D007822 9.2e-11 69.7 64 59.4
Gohir.A08G011700 Gossypium hirsutum HOM05D006265 ORTHO05D007822 1.2e-10 69.3 72 55.6
Nn2g15777 Nelumbo nucifera HOM05D006265 ORTHO05D007822 1.2e-10 69.3 66 62.1
CDE04G0145 Ceratophyllum demersum HOM05D006265 ORTHO05D007822 1.6e-10 68.9 64 60.9
Ca_16390_v3 Cicer arietinum L. HOM05D006265 ORTHO05D007822 1.6e-10 68.9 68 54.4
Ca_29696_v3 Cicer arietinum L. HOM05D006265 ORTHO05D007822 1.6e-10 68.9 68 54.4
Gohir.D08G022200 Gossypium hirsutum HOM05D006265 ORTHO05D007822 1.6e-10 68.9 72 55.6
Gorai.004G017500 Gossypium raimondii HOM05D006265 ORTHO05D007822 1.6e-10 68.9 72 55.6
MD03G1009900 Malus domestica HOM05D006265 ORTHO05D007822 2.0e-10 68.6 64 53.1
DCAR_001991 Daucus carota HOM05D006265 ORTHO05D007822 2.7e-10 68.2 68 55.9
Hund21646 Selenicereus undatus HOM05D006265 ORTHO05D007822 2.7e-10 68.2 63 55.6
Potri.001G008700 Populus trichocarpa HOM05D006265 ORTHO05D007822 3.5e-10 67.8 66 57.6
ECA233G5869 Erigeron canadensis HOM05D006265 ORTHO05D007822 4.6e-10 67.4 63 55.6
SalBow6G4223 Salvia bowleyana HOM05D006265 ORTHO05D007822 4.6e-10 67.4 63 57.1
arahy.Tifrunner.gnm1.ann1.BC49LP Arachis hypogaea HOM05D006265 ORTHO05D007822 7.8e-10 66.6 65 53.8
arahy.Tifrunner.gnm1.ann1.L83JF4 Arachis hypogaea HOM05D006265 ORTHO05D007822 7.8e-10 66.6 65 53.8
Eucgr.J01795 Eucalyptus grandis HOM05D006265 ORTHO05D007822 7.8e-10 66.6 68 54.4
Glyma.18G001100 Glycine max HOM05D006265 ORTHO05D007822 1.0e-09 66.2 61 60.7
MD03G1008800 Malus domestica HOM05D006265 ORTHO05D007822 1.0e-09 66.2 64 51.6
vmacro04214 Vaccinium macrocarpon HOM05D006265 ORTHO05D007822 1.3e-09 65.9 66 60.6
vmacro22565 Vaccinium macrocarpon HOM05D006265 ORTHO05D007822 1.7e-09 65.5 66 60.6
Aqoxy1G00067 Aquilegia oxysepala HOM05D006265 ORTHO05D007822 2.3e-09 65.1 61 57.4
Sabra01G0006700 Salix brachista HOM05D006265 ORTHO05D007822 2.3e-09 65.1 65 55.4
VMungo1383G2426 Vigna mungo HOM05D006265 ORTHO05D007822 2.3e-09 65.1 63 57.1
MD03G1010200 Malus domestica HOM05D006265 ORTHO05D007822 3.0e-09 64.7 64 51.6
Psat5g103200 Pisum sativum HOM05D006265 ORTHO05D007822 3.0e-09 64.7 68 54.4
RcHm_v2.0_Chr5g0081541 Rosa chinensis HOM05D006265 ORTHO05D007822 3.0e-09 64.7 65 53.8
FAN16G3355 Fragaria x ananassa HOM05D006265 ORTHO05D007822 1.1e-08 62.8 65 50.8
FvH4_3g44840 Fragaria vesca HOM05D006265 ORTHO05D007822 1.5e-08 62.4 65 50.8
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.5e-08 62.4 65 50.8
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.5e-08 62.4 65 50.8
FAN25G3608 Fragaria x ananassa HOM05D006265 ORTHO05D007822 1.5e-08 62.4 65 50.8
CDE06G1898 Ceratophyllum demersum HOM05D006265 ORTHO05D007822 1.9e-08 62.0 62 58.1
PSO017G3167 Papaver somniferum HOM05D006265 ORTHO05D007822 1.9e-08 62.0 61 54.1
Lj6g0010790 Lotus japonicus HOM05D006265 ORTHO05D007822 3.3e-08 61.2 66 53.0
PSO170G6775 Papaver somniferum HOM05D006265 ORTHO05D007822 3.3e-08 61.2 61 52.5
Ciclev10014343m.g Citrus clementina HOM05D006265 ORTHO05D007822 4.3e-08 60.8 72 48.6
Ah.06g193040 Amaranthus hybridus HOM05D006265 ORTHO05D007822 7.3e-08 60.1 57 56.1
Medtr3g083770 Medicago truncatula HOM05D006265 ORTHO05D007822 9.5e-08 59.7 69 55.1
AUR62019195 Chenopodium quinoa HOM05D006265 ORTHO05D007822 1.2e-07 59.3 65 49.2
Migut.D02531 Erythranthe guttata HOM05D006265 ORTHO05D007822 1.6e-07 58.9 62 51.6
TPR.G22747 Trifolium pratense HOM05D006265 ORTHO05D007822 3.6e-07 57.8 69 53.6
EL10Ac4g10351 Beta vulgaris HOM05D006265 ORTHO05D007822 6.2e-07 57.0 64 46.9
AUR62000024 Chenopodium quinoa HOM05D006265 ORTHO05D007822 1.1e-06 56.2 65 47.7
unitig_8.g3597 Utricularia gibba HOM05D006265 ORTHO05D007822 1.1e-06 56.2 66 48.5
SEGI_19155 Sequoiadendron giganteum HOM05D006265 ORTHO05D007822 1.8e-06 55.5 60 53.3
Lalb_Chr11g0075951 Lupinus albus HOM05D006265 ORTHO05D007822 2.3e-06 55.1 68 51.5


User provided reference genes

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